Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 6.3e-45 183.7 93 100.0
Sopen10g033060 Solanum pennellii HOM05D003745 ORTHO05D004215 1.3e-42 176.0 93 93.5
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.8e-39 165.6 93 88.2
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 2.5e-25 118.6 88 64.8
Peaxi162Scf00110g02023 Petunia axillaris HOM05D003745 ORTHO05D004215 4.7e-24 114.4 95 66.3
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 5.8e-22 107.5 80 63.8
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 1.1e-20 103.2 81 63.0
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 1.9e-20 102.4 60 81.7
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 4.6e-19 97.8 90 56.7
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 3.6e-16 88.2 81 55.6
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 1.2e-14 83.2 95 52.6
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 7.6e-14 80.5 96 46.9
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 2.9e-13 78.6 95 51.6
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 3.8e-13 78.2 90 50.0
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 6.4e-13 77.4 96 45.8
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 8.4e-13 77.0 98 50.0
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 9.3e-12 73.6 81 49.4
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 4.6e-11 71.2 91 49.5
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 7.8e-11 70.5 83 45.8
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 7.8e-11 70.5 61 54.1
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 1.0e-10 70.1 80 47.5
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.7e-10 69.3 77 49.4
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 3.9e-10 68.2 80 48.8
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 5.1e-10 67.8 92 43.5
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 6.6e-10 67.4 86 46.5
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 6.6e-10 67.4 77 48.1
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 6.6e-10 67.4 60 51.7
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 1.5e-09 66.2 69 49.3
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 1.9e-09 65.9 75 49.3
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.9e-09 65.9 77 46.8
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 1.9e-09 65.9 90 44.4
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.9e-09 65.9 89 44.9
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 1.9e-09 65.9 75 48.0
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 2.5e-09 65.5 75 46.7
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 4.3e-09 64.7 91 39.6
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 4.3e-09 64.7 91 39.6
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 4.3e-09 64.7 84 44.0
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 5.6e-09 64.3 89 41.6
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 5.6e-09 64.3 88 47.7
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 5.6e-09 64.3 37 73.0
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 7.3e-09 63.9 94 40.4
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 7.3e-09 63.9 94 40.4
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 7.3e-09 63.9 86 45.3
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 7.3e-09 63.9 43 62.8
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 7.3e-09 63.9 91 38.5
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 7.3e-09 63.9 77 44.2
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 7.3e-09 63.9 54 55.6
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 9.6e-09 63.5 54 53.7
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 9.6e-09 63.5 92 41.3
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 9.6e-09 63.5 59 50.8
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 1.3e-08 63.2 50 54.0
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 1.3e-08 63.2 90 40.0
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 1.3e-08 63.2 94 42.6
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 1.3e-08 63.2 76 43.4
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 1.3e-08 63.2 94 41.5
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.1e-08 62.4 42 69.0
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.1e-08 62.4 42 69.0
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 2.1e-08 62.4 81 43.2
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 2.8e-08 62.0 77 45.5
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 3.6e-08 61.6 75 40.0
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 3.6e-08 61.6 75 40.0
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 4.8e-08 61.2 91 39.6
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 4.8e-08 61.2 81 43.2
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 4.8e-08 61.2 48 50.0
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 6.2e-08 60.8 92 37.0
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 6.2e-08 60.8 86 41.9
Ah.08g210930 Amaranthus hybridus HOM05D040036 ORTHO05D004215 8.1e-08 60.5 96 40.6
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 8.1e-08 60.5 86 41.9
Gohir.A01G209200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 8.1e-08 60.5 88 43.2
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 8.1e-08 60.5 90 41.1
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 1.1e-07 60.1 83 45.8
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 1.1e-07 60.1 83 45.8
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.1e-07 60.1 92 41.3
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 1.1e-07 60.1 89 47.2
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 1.1e-07 60.1 88 45.5
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.1e-07 60.1 88 45.5
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.1e-07 60.1 91 39.6
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 1.1e-07 60.1 78 46.2
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.1e-07 60.1 88 38.6
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.4e-07 59.7 85 41.2
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 1.8e-07 59.3 53 52.8
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 1.8e-07 59.3 84 45.2
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 2.4e-07 58.9 55 47.3
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 2.4e-07 58.9 83 41.0
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.4e-07 58.9 84 34.5
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 2.4e-07 58.9 42 61.9
Sc12g0004180 Simmondsia chinensis HOM05D003745 ORTHO05D004215 2.4e-07 58.9 67 40.3
PSO339G1716 Papaver somniferum HOM05D003745 ORTHO05D004215 3.1e-07 58.5 101 38.6
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 4.0e-07 58.2 84 36.9
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 4.0e-07 58.2 49 53.1
Carub.0006s0262 Capsella rubella HOM05D003745 ORTHO05D004215 4.0e-07 58.2 93 39.8
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 4.0e-07 58.2 49 53.1
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 4.0e-07 58.2 84 47.6
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 4.0e-07 58.2 42 66.7
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 4.0e-07 58.2 38 68.4
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 4.0e-07 58.2 89 39.3
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 4.0e-07 58.2 77 41.6
TWI74G0799 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 4.0e-07 58.2 83 43.4
CARHR209590 Cardamine hirsuta HOM05D003745 ORTHO05D004215 5.3e-07 57.8 44 54.5
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 5.3e-07 57.8 91 38.5
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 5.3e-07 57.8 84 33.3
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 5.3e-07 57.8 42 59.5
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 5.3e-07 57.8 41 65.9
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 5.3e-07 57.8 41 65.9
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 6.9e-07 57.4 83 42.2
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 6.9e-07 57.4 92 41.3
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 6.9e-07 57.4 80 46.2
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 9.0e-07 57.0 79 43.0
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 9.0e-07 57.0 37 64.9
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.2e-06 56.6 39 59.0
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 1.2e-06 56.6 42 57.1
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 1.2e-06 56.6 91 38.5
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 1.2e-06 56.6 78 39.7
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 1.5e-06 56.2 90 37.8
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 1.5e-06 56.2 50 48.0
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 1.5e-06 56.2 88 36.4
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 1.5e-06 56.2 91 36.3
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.5e-06 56.2 57 47.4
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 2.0e-06 55.8 54 51.9
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 2.0e-06 55.8 96 38.5
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 2.6e-06 55.5 92 40.2
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 2.6e-06 55.5 58 46.6
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 2.6e-06 55.5 91 38.5
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 2.6e-06 55.5 92 33.7
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.6e-06 55.5 91 37.4
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 2.6e-06 55.5 84 41.7
Gorai.002G242500 Gossypium raimondii HOM05D003745 ORTHO05D004215 2.6e-06 55.5 86 41.9
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 2.6e-06 55.5 42 61.9
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 2.6e-06 55.5 54 51.9
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 2.6e-06 55.5 91 36.3
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.4e-06 55.1 98 40.8
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 3.4e-06 55.1 92 39.1
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 3.4e-06 55.1 83 39.8
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 3.4e-06 55.1 93 37.6
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 3.4e-06 55.1 94 40.4
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 4.4e-06 54.7 92 40.2
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 4.4e-06 54.7 45 53.3
Solyc11g066880.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 4.4e-06 54.7 92 35.9
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 5.8e-06 54.3 60 41.7
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 5.8e-06 54.3 100 38.0
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 5.8e-06 54.3 85 41.2
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 5.8e-06 54.3 90 38.9
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 5.8e-06 54.3 89 39.3
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 5.8e-06 54.3 91 35.2
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 7.6e-06 53.9 92 38.0
SalBow3G0501 Salvia bowleyana HOM05D003745 ORTHO05D004215 7.6e-06 53.9 74 44.6
ATR0820G192 Amborella trichopoda HOM05D003745 ORTHO05D004215 9.9e-06 53.5 44 56.8
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 9.9e-06 53.5 38 60.5
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 9.9e-06 53.5 93 35.5
BraA01t02615Z Brassica rapa HOM05D003745 ORTHO05D004215 9.9e-06 53.5 75 38.7
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 9.9e-06 53.5 72 40.3
Nitab4.5_0010833g0010 Nicotiana tabacum HOM05D003745 ORTHO05D004215 9.9e-06 53.5 81 39.5
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 9.9e-06 53.5 88 39.8


User provided reference genes

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