Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g083100.1 Solanum lycopersicum HOM05D014815 ORTHO05D017127 1.7e-131 472.6 234 100.0
Solyc10g083080.3 Solanum lycopersicum HOM05D014815 ORTHO05D017127 1.4e-112 409.8 254 81.5
PGSC0003DMG400040827 Solanum tuberosum HOM05D014815 ORTHO05D017127 1.6e-76 290.0 237 65.8
Solyc10g083070.1 Solanum lycopersicum HOM05D014815 ORTHO05D017127 5.3e-72 275.0 316 51.9
Solyc10g083090.1 Solanum lycopersicum HOM05D014815 ORTHO05D017127 2.4e-69 266.2 316 50.6
PGSC0003DMG400043673 Solanum tuberosum HOM05D014815 ORTHO05D017127 4.0e-64 248.8 328 47.0
PGSC0003DMG400045504 Solanum tuberosum HOM05D014815 ORTHO05D017127 4.2e-61 238.8 142 83.8
Solyc10g082060.1 Solanum lycopersicum HOM05D014815 ORTHO05D017127 8.7e-51 204.5 249 51.8
PGSC0003DMG400045485 Solanum tuberosum HOM05D014815 ORTHO05D017127 2.6e-34 149.8 182 50.5
PGSC0003DMG400037114 Solanum tuberosum HOM05D014815 ORTHO05D017127 2.3e-27 126.7 185 45.9
CAN.G835.7 Capsicum annuum HOM05D017354 ORTHO05D018853 1.9e-21 107.1 159 44.7
Nitab4.5_0004277g0030 Nicotiana tabacum HOM05D001000 ORTHO05D001896 4.4e-18 95.9 188 39.9
CAN.G598.2 Capsicum annuum HOM05D017354 ORTHO05D018853 8.3e-17 91.7 196 39.8
Sopen01g003350 Solanum pennellii HOM05D001000 ORTHO05D001896 6.5e-14 82.0 255 30.6
Solyc01g007810.1 Solanum lycopersicum HOM05D001000 ORTHO05D001896 8.6e-14 81.6 249 30.5
PGSC0003DMG400016385 Solanum tuberosum HOM05D001000 ORTHO05D001896 1.0e-11 74.7 249 29.7
Peaxi162Scf01662g00005 Petunia axillaris HOM05D001000 ORTHO05D001896 8.8e-11 71.6 186 35.5
THA.LOC104826961 Tarenaya hassleriana HOM05D001000 ORTHO05D001896 3.4e-10 69.7 136 40.4
TPR.G20718 Trifolium pratense HOM05D001000 ORTHO05D001896 3.4e-10 69.7 176 31.2
TPR.G26283 Trifolium pratense HOM05D001000 ORTHO05D001896 3.4e-10 69.7 171 31.6
Nitab4.5_0002876g0020 Nicotiana tabacum HOM05D001000 ORTHO05D001896 9.8e-10 68.2 255 30.6
Glyma.20G112400 Glycine max HOM05D001000 ORTHO05D001896 1.3e-09 67.8 216 28.7
ClCG05G021880 Citrullus lanatus HOM05D001000 ORTHO05D001896 2.8e-09 66.6 230 31.3
Lj5g0023342 Lotus japonicus HOM05D001000 ORTHO05D001896 2.8e-09 66.6 240 28.8
DCAR_013428 Daucus carota HOM05D001000 ORTHO05D001896 3.7e-09 66.2 220 30.5
Nitab4.5_0000020g0390 Nicotiana tabacum HOM05D001000 ORTHO05D001896 3.7e-09 66.2 243 28.8
MELO3C012340.2 Cucumis melo HOM05D001000 ORTHO05D001896 6.3e-09 65.5 218 29.4
Sed0016928 Sechium edule HOM05D001000 ORTHO05D001896 6.3e-09 65.5 204 33.8
Psat6g230280 Pisum sativum HOM05D001000 ORTHO05D001896 1.1e-08 64.7 172 30.2
QL04p047041 Quercus lobata HOM05D001000 ORTHO05D001896 1.1e-08 64.7 228 31.6
Medtr1g111640 Medicago truncatula HOM05D001000 ORTHO05D001896 1.8e-08 63.9 216 27.3
Psat3g030320 Pisum sativum HOM05D001000 ORTHO05D001896 1.8e-08 63.9 211 28.4
VMungo0720G2559 Vigna mungo HOM05D001000 ORTHO05D001896 1.8e-08 63.9 223 26.9
CAN.G835.13 Capsicum annuum HOM05D017354 ORTHO05D018853 3.1e-08 63.2 153 35.3
Lsat_1_v5_gn_9_47200 Lactuca sativa HOM05D001000 ORTHO05D001896 3.1e-08 63.2 152 32.9
Peaxi162Scf00419g00035 Petunia axillaris HOM05D001000 ORTHO05D001896 3.1e-08 63.2 227 30.8
Phvul.007G024100 Phaseolus vulgaris HOM05D001000 ORTHO05D001896 3.1e-08 63.2 231 29.0
Lalb_Chr21g0309071 Lupinus albus HOM05D001000 ORTHO05D001896 5.4e-08 62.4 247 30.4
Duzib093G1555 Durio zibethinus HOM05D001000 ORTHO05D001896 7.0e-08 62.0 204 29.4
Duzib128G0514 Durio zibethinus HOM05D001000 ORTHO05D001896 7.0e-08 62.0 129 37.2
Sed0011934 Sechium edule HOM05D001000 ORTHO05D001896 7.0e-08 62.0 221 28.5
CAN.G574.38 Capsicum annuum HOM05D001000 ORTHO05D001896 9.2e-08 61.6 204 26.0
HanXRQChr14g0438091 Helianthus annuus HOM05D001000 ORTHO05D001896 9.2e-08 61.6 181 32.0
Gohir.D06G177300 Gossypium hirsutum HOM05D001000 ORTHO05D001896 1.2e-07 61.2 238 28.2
CsaV3_5G035260 Cucumis sativus L. HOM05D001000 ORTHO05D001896 1.6e-07 60.8 209 31.1
Gorai.N007900 Gossypium raimondii HOM05D001000 ORTHO05D001896 1.6e-07 60.8 238 28.2
MD14G1035600 Malus domestica HOM05D001000 ORTHO05D001896 2.0e-07 60.5 172 29.1
Ca_09039_v3 Cicer arietinum L. HOM05D001000 ORTHO05D001896 2.7e-07 60.1 239 28.0
Gohir.A06G169700 Gossypium hirsutum HOM05D001000 ORTHO05D001896 3.5e-07 59.7 239 29.3
Glyma.10G277300 Glycine max HOM05D001000 ORTHO05D001896 4.5e-07 59.3 226 26.5
Sabra08G0011000 Salix brachista HOM05D001000 ORTHO05D001896 4.5e-07 59.3 234 28.6
Lj1g0011176 Lotus japonicus HOM05D001000 ORTHO05D001896 5.9e-07 58.9 142 31.0
CANSAT56G4195 Cannabis sativa HOM05D001000 ORTHO05D001896 7.8e-07 58.5 111 40.5
Manes.08G031100 Manihot esculenta HOM05D001000 ORTHO05D001896 7.8e-07 58.5 218 28.4
CAN.G835.9 Capsicum annuum HOM05D017354 ORTHO05D018853 1.0e-06 58.2 102 38.2
Dinv31742 Davidia involucrata HOM05D001000 ORTHO05D001896 1.0e-06 58.2 222 26.1
Nitab4.5_0003787g0020 Nicotiana tabacum HOM05D001000 ORTHO05D001896 1.0e-06 58.2 227 31.7
Oeu033284.1 Olea europaea HOM05D001000 ORTHO05D001896 1.0e-06 58.2 139 33.8
Thecc.05G100500 Theobroma cacao HOM05D001000 ORTHO05D001896 1.0e-06 58.2 208 28.4
Manes.09G048800 Manihot esculenta HOM05D001000 ORTHO05D001896 1.3e-06 57.8 178 34.3
Medtr7g105780 Medicago truncatula HOM05D001000 ORTHO05D001896 1.3e-06 57.8 158 32.9
Thecc.10G115800 Theobroma cacao HOM05D001000 ORTHO05D001896 1.3e-06 57.8 209 29.2
DCAR_016924 Daucus carota HOM05D001000 ORTHO05D001896 1.7e-06 57.4 218 26.6
Dinv12320 Davidia involucrata HOM05D001000 ORTHO05D001896 1.7e-06 57.4 235 28.9
Phvul.001G194000 Phaseolus vulgaris HOM05D001000 ORTHO05D001896 1.7e-06 57.4 99 40.4
GSVIVG01034649001 Vitis vinifera HOM05D001000 ORTHO05D001896 1.7e-06 57.4 146 34.2
PGSC0003DMG400007601 Solanum tuberosum HOM05D001000 ORTHO05D001896 2.3e-06 57.0 233 30.0
Atru.chr8.1399 Acer truncatum HOM05D001000 ORTHO05D001896 2.9e-06 56.6 187 29.4
Aqoxy4G02690 Aquilegia oxysepala HOM05D001000 ORTHO05D001896 2.9e-06 56.6 230 27.8
Cc02_g09500 Coffea canephora HOM05D001000 ORTHO05D001896 2.9e-06 56.6 220 27.3
Duzib106G1160 Durio zibethinus HOM05D001000 ORTHO05D001896 2.9e-06 56.6 231 29.0
Solyc11g006670.1 Solanum lycopersicum HOM05D001000 ORTHO05D001896 2.9e-06 56.6 84 44.0
Cc06_g06330 Coffea canephora HOM05D001000 ORTHO05D001896 3.8e-06 56.2 238 28.2
MELO3C009514.2 Cucumis melo HOM05D001000 ORTHO05D001896 3.8e-06 56.2 104 40.4
CiPaw.09G018500 Carya illinoinensis HOM05D001000 ORTHO05D001896 5.0e-06 55.8 232 30.2
CsaV3_3G037710 Cucumis sativus L. HOM05D001000 ORTHO05D001896 5.0e-06 55.8 104 40.4
Nitab4.5_0001047g0050 Nicotiana tabacum HOM05D001000 ORTHO05D001896 5.0e-06 55.8 226 31.4
QL07p037531 Quercus lobata HOM05D001000 ORTHO05D001896 5.0e-06 55.8 203 29.1
Atru.chr12.1059 Acer truncatum HOM05D001000 ORTHO05D001896 6.6e-06 55.5 76 44.7
ClCG10G018540 Citrullus lanatus HOM05D001000 ORTHO05D001896 8.6e-06 55.1 93 40.9
Haze_19677 Corylus avellana HOM05D001000 ORTHO05D001896 8.6e-06 55.1 233 27.5
Manes.07G085600 Manihot esculenta HOM05D001000 ORTHO05D001896 8.6e-06 55.1 225 29.3
Sc19g0004100 Simmondsia chinensis HOM05D001000 ORTHO05D002976 8.6e-06 55.1 96 36.5
Sopen11g002600 Solanum pennellii HOM05D001000 ORTHO05D001896 8.6e-06 55.1 177 31.6
TWI74G0536 Tripterygium wilfordii HOM05D001000 ORTHO05D001896 8.6e-06 55.1 135 34.1


User provided reference genes

Program Settings