Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g082064.1 Solanum lycopersicum HOM05D005465 ORTHO05D006612 2.9e-82 308.5 158 100.0
PGSC0003DMG400026569 Solanum tuberosum HOM05D005465 ORTHO05D006612 6.3e-61 237.7 127 92.9
Nitab4.5_0000212g0270 Nicotiana tabacum HOM05D005465 ORTHO05D006612 9.4e-57 223.8 127 85.8
Nitab4.5_0008370g0030 Nicotiana tabacum HOM05D005465 ORTHO05D006612 1.1e-54 216.9 122 86.9
Peaxi162Scf00991g00013 Petunia axillaris HOM05D005465 ORTHO05D006612 4.4e-54 214.9 127 81.9
SGA_v2.0_scaffold4G02379 Striga asiatica HOM05D005465 ORTHO05D006612 3.7e-53 211.8 127 81.9
Nitab4.5_0010535g0020 Nicotiana tabacum HOM05D005465 ORTHO05D006612 1.1e-52 210.3 127 78.0
SGA_v2.0_scaffold52G19131 Striga asiatica HOM05D005465 ORTHO05D006612 9.1e-52 207.2 127 78.0
Actinidia26253 Actinidia chinensis HOM05D005465 ORTHO05D006612 2.7e-51 205.7 127 76.4
Nitab4.5_0005910g0030 Nicotiana tabacum HOM05D005465 ORTHO05D006612 1.0e-50 203.8 128 75.8
CSS0002198 Camellia sinensis var. sinensis HOM05D005465 ORTHO05D006612 2.2e-50 202.6 127 74.8
Hma1.2p1_0481F.1_g162260 Hydrangea macrophylla HOM05D005465 ORTHO05D006612 3.8e-50 201.8 127 74.0
PGSC0003DMG400001360 Solanum tuberosum HOM05D005465 ORTHO05D006612 3.8e-50 201.8 127 74.8
Sopen02g033620 Solanum pennellii HOM05D005465 ORTHO05D006612 5.0e-50 201.4 127 74.0
Hma1.2p1_0481F.1_g162270 Hydrangea macrophylla HOM05D005465 ORTHO05D006612 8.5e-50 200.7 124 75.0
Gorai.003G101800 Gossypium raimondii HOM05D005465 ORTHO05D006612 4.2e-49 198.4 131 71.8
Gohir.D03G097000 Gossypium hirsutum HOM05D005465 ORTHO05D006612 2.1e-48 196.1 126 73.0
PGR044G0931 Punica granatum HOM05D005465 ORTHO05D006612 2.1e-48 196.1 128 76.6
Solyc02g088930.4 Solanum lycopersicum HOM05D005465 ORTHO05D006612 2.7e-48 195.7 124 72.6
Gohir.A03G070600 Gossypium hirsutum HOM05D005465 ORTHO05D006612 4.7e-48 194.9 126 72.2
Manes.06G083500 Manihot esculenta HOM05D005465 ORTHO05D006612 1.4e-47 193.4 131 73.3
COL.COLO4_24335 Corchorus olitorius HOM05D005465 ORTHO05D006612 1.8e-47 193.0 126 70.6
Thecc.03G103400 Theobroma cacao HOM05D005465 ORTHO05D006612 2.3e-47 192.6 122 73.8
Duzib205G0879 Durio zibethinus HOM05D005465 ORTHO05D006612 3.0e-47 192.2 126 69.8
ClCG04G011730 Citrullus lanatus HOM05D005465 ORTHO05D006612 8.8e-47 190.7 127 73.2
Lsat_1_v5_gn_4_171900 Lactuca sativa HOM05D005465 ORTHO05D006612 8.8e-47 190.7 127 71.7
Nn3g17466 Nelumbo nucifera HOM05D005465 ORTHO05D006612 8.8e-47 190.7 129 71.3
Cc07_g04290 Coffea canephora HOM05D005465 ORTHO05D006612 1.2e-46 190.3 125 72.0
Nn4g23446 Nelumbo nucifera HOM05D005465 ORTHO05D006612 1.2e-46 190.3 129 70.5
PGSC0003DMG400035500 Solanum tuberosum HOM05D005465 ORTHO05D006612 1.5e-46 189.9 130 70.0
MELO3C002037.2 Cucumis melo HOM05D005465 ORTHO05D006612 2.0e-46 189.5 127 72.4
Duzib084G0509 Durio zibethinus HOM05D005465 ORTHO05D006612 2.6e-46 189.1 126 69.8
DCAR_011037 Daucus carota HOM05D005465 ORTHO05D006612 3.4e-46 188.7 125 75.2
TAR622G0582 Trochodendron aralioides HOM05D005465 ORTHO05D006612 4.4e-46 188.3 124 70.2
unitig_899.g15102 Utricularia gibba HOM05D005465 ORTHO05D006612 5.7e-46 188.0 120 72.5
ECA232G0503 Erigeron canadensis HOM05D005465 ORTHO05D006612 7.5e-46 187.6 127 70.9
CsaV3_1G006060 Cucumis sativus L. HOM05D005465 ORTHO05D006612 9.8e-46 187.2 127 71.7
Migut.H00618 Erythranthe guttata HOM05D005465 ORTHO05D006612 9.8e-46 187.2 127 70.9
Peaxi162Scf00166g00046 Petunia axillaris HOM05D005465 ORTHO05D006612 1.7e-45 186.4 129 69.8
Rhsim08G0075200 Rhododendron simsii HOM05D005465 ORTHO05D006612 2.2e-45 186.0 123 72.4
Ciclev10022497m.g Citrus clementina HOM05D005465 ORTHO05D006612 1.1e-44 183.7 125 70.4
Gorai.006G268200 Gossypium raimondii HOM05D005465 ORTHO05D006612 1.1e-44 183.7 126 68.3
Cpa.g.sc746.2 Carica papaya HOM05D005465 ORTHO05D006612 2.4e-44 182.6 121 71.9
CiPaw.11G054700 Carya illinoinensis HOM05D005465 ORTHO05D006612 2.4e-44 182.6 125 71.2
VMungo1215G2862 Vigna mungo HOM05D005465 ORTHO05D006612 2.4e-44 182.6 123 71.5
TWI81G0357 Tripterygium wilfordii HOM05D005465 ORTHO05D006612 3.1e-44 182.2 128 68.8
Sc14g0006350 Simmondsia chinensis HOM05D005465 ORTHO05D006612 4.1e-44 181.8 120 75.0
Aqoxy3G03677 Aquilegia oxysepala HOM05D005465 ORTHO05D006612 5.4e-44 181.4 127 66.1
Ah.10g032300 Amaranthus hybridus HOM05D005465 ORTHO05D006612 7.0e-44 181.0 127 70.1
Prupe.5G206300 Prunus persica HOM05D005465 ORTHO05D006612 2.7e-43 179.1 128 69.5
PSO063G4354 Papaver somniferum HOM05D005465 ORTHO05D006612 3.5e-43 178.7 127 67.7
PSO782G3842 Papaver somniferum HOM05D005465 ORTHO05D006612 3.5e-43 178.7 127 66.1
Sed0023287 Sechium edule HOM05D005465 ORTHO05D006612 4.5e-43 178.3 127 66.9
TAR371G0638 Trochodendron aralioides HOM05D005465 ORTHO05D006612 4.5e-43 178.3 127 66.9
Cfa019348 Carpinus fangiana HOM05D005465 ORTHO05D006612 5.9e-43 177.9 125 68.8
Haze_07739 Corylus avellana HOM05D005465 ORTHO05D006612 5.9e-43 177.9 125 68.8
Sopen02g016050 Solanum pennellii HOM05D005465 ORTHO05D006612 5.9e-43 177.9 127 75.6
Glyma.17G079700 Glycine max HOM05D005465 ORTHO05D006612 7.7e-43 177.6 123 68.3
RcHm_v2.0_Chr7g0183221 Rosa chinensis HOM05D005465 ORTHO05D006612 1.0e-42 177.2 124 69.4
arahy.Tifrunner.gnm1.ann1.13IMLW Arachis hypogaea HOM05D005465 ORTHO05D006612 2.2e-42 176.0 125 68.0
FvH4_5g13720 Fragaria vesca HOM05D005465 ORTHO05D006612 2.2e-42 176.0 127 67.7
Atru.chr9.555 Acer truncatum HOM05D005465 ORTHO05D006612 5.0e-42 174.9 124 67.7
FAN18G4042 Fragaria x ananassa HOM05D005465 ORTHO05D006612 5.0e-42 174.9 124 67.7
Glyma.05G020100 Glycine max HOM05D005465 ORTHO05D006612 8.5e-42 174.1 123 67.5
MD06G1226100 Malus domestica HOM05D005465 ORTHO05D006612 8.5e-42 174.1 122 71.3
FAN13G0353 Fragaria x ananassa HOM05D005465 ORTHO05D006612 2.5e-41 172.6 124 66.9
MD14G1213000 Malus domestica HOM05D005465 ORTHO05D006612 4.2e-41 171.8 123 69.1
Rhsim10G0048500 Rhododendron simsii HOM05D005465 ORTHO05D006612 4.2e-41 171.8 127 66.1
Rhsim10G0047800 Rhododendron simsii HOM05D005465 ORTHO05D006612 1.2e-40 170.2 127 65.4
Phvul.003G183800 Phaseolus vulgaris HOM05D005465 ORTHO05D006612 1.6e-40 169.9 123 65.9
AL6G18430 Arabidopsis lyrata HOM05D005465 ORTHO05D006612 2.7e-40 169.1 129 62.8
Eucgr.K02534 Eucalyptus grandis HOM05D005465 ORTHO05D006612 3.6e-40 168.7 121 66.9
AUR62038681 Chenopodium quinoa HOM05D005465 ORTHO05D006612 4.7e-40 168.3 125 64.0
AUR62018194 Chenopodium quinoa HOM05D005465 ORTHO05D006612 6.1e-40 167.9 125 64.8
Oeu062167.1 Olea europaea HOM05D005465 ORTHO05D006612 6.1e-40 167.9 127 67.7
THA.LOC104801135 Tarenaya hassleriana HOM05D005465 ORTHO05D006612 6.1e-40 167.9 125 66.4
BcaB01g05639 Brassica carinata HOM05D005465 ORTHO05D006612 1.0e-39 167.2 127 63.8
QL10p019840 Quercus lobata HOM05D005465 ORTHO05D006612 1.0e-39 167.2 120 64.2
A10p28580 Brassica napus HOM05D005465 ORTHO05D006612 1.8e-39 166.4 125 63.2
BolC9t59633H Brassica oleracea HOM05D005465 ORTHO05D006612 1.8e-39 166.4 125 63.2
Potri.004G123700 Populus trichocarpa HOM05D005465 ORTHO05D006612 1.8e-39 166.4 126 66.7
BcaB08g37294 Brassica carinata HOM05D005465 ORTHO05D006612 2.3e-39 166.0 125 63.2
C09p68870 Brassica napus HOM05D005465 ORTHO05D006612 2.3e-39 166.0 125 63.2
Carub.0006s0695 Capsella rubella HOM05D005465 ORTHO05D006612 2.3e-39 166.0 127 63.0
BraA10t44907Z Brassica rapa HOM05D005465 ORTHO05D006612 5.2e-39 164.9 125 62.4
Thhalv10015010m.g Eutrema salsugineum HOM05D005465 ORTHO05D006612 6.8e-39 164.5 127 63.0
Sp6g34890 Schrenkiella parvula HOM05D005465 ORTHO05D006612 6.8e-39 164.5 127 63.0
EL10Ac2g03144 Beta vulgaris HOM05D005465 ORTHO05D006612 8.8e-39 164.1 127 64.6
CARHR205120 Cardamine hirsuta HOM05D005465 ORTHO05D006612 8.8e-39 164.1 127 61.4
AT5G08060 Arabidopsis thaliana HOM05D005465 ORTHO05D006612 1.2e-38 163.7 129 60.5
Lalb_Chr13g0302801 Lupinus albus HOM05D005465 ORTHO05D006612 1.2e-38 163.7 123 64.2
Zm00001eb370380 Zea mays HOM05D005465 ORTHO05D006612 1.5e-38 163.3 133 61.7
TPR.G2036 Trifolium pratense HOM05D005465 ORTHO05D006612 3.4e-38 162.2 127 59.8
Psat4g047600 Pisum sativum HOM05D005465 ORTHO05D006612 4.4e-38 161.8 127 62.2
Dinv34936 Davidia involucrata HOM05D005465 ORTHO05D006612 7.5e-38 161.0 102 74.5
Zm00001eb152340 Zea mays HOM05D005465 ORTHO05D006612 9.8e-38 160.6 133 60.2
Os01g0763300 Oryza sativa ssp. japonica HOM05D005465 ORTHO05D006612 1.3e-37 160.2 129 60.5
Sopen10g022010 Solanum pennellii HOM05D005465 ORTHO05D006612 1.7e-37 159.8 127 69.3
A03p03570 Brassica napus HOM05D005465 ORTHO05D006612 2.2e-37 159.5 126 61.1
BraA03t09707Z Brassica rapa HOM05D005465 ORTHO05D006612 2.2e-37 159.5 126 61.1
Medtr4g109650 Medicago truncatula HOM05D005465 ORTHO05D006612 2.2e-37 159.5 127 59.8
Rhsim10G0050100 Rhododendron simsii HOM05D005465 ORTHO05D006612 2.2e-37 159.5 127 63.8
Gohir.D09G244200 Gossypium hirsutum HOM05D005465 ORTHO05D006612 2.8e-37 159.1 126 62.7
BolC3t12939H Brassica oleracea HOM05D005465 ORTHO05D006612 3.7e-37 158.7 127 62.2
Lj4g0014841 Lotus japonicus HOM05D005465 ORTHO05D006612 3.7e-37 158.7 125 64.8
Aa31LG3G18480 Aethionema arabicum HOM05D005465 ORTHO05D006612 4.9e-37 158.3 124 62.9
BraA02t04941Z Brassica rapa HOM05D005465 ORTHO05D006612 6.3e-37 157.9 124 60.5
Sopen10g012570 Solanum pennellii HOM05D005465 ORTHO05D006612 8.3e-37 157.5 127 69.3
Sabra04G0090300 Salix brachista HOM05D005465 ORTHO05D006612 3.1e-36 155.6 126 63.5
Ca_21764_v3 Cicer arietinum L. HOM05D005465 ORTHO05D006612 9.2e-36 154.1 127 59.1
MBI16_g10835_MAGBIO Magnolia biondii HOM05D005465 ORTHO05D006612 1.6e-35 153.3 122 60.7
SHI17457 Sapria himalayana HOM05D005465 ORTHO05D006612 1.0e-34 150.6 124 59.7
Sopen10g006060 Solanum pennellii HOM05D005465 ORTHO05D006612 1.3e-34 150.2 127 67.7
DCAR_025436 Daucus carota HOM05D005465 ORTHO05D006612 2.9e-34 149.1 143 54.5
Rhsim10G0048300 Rhododendron simsii HOM05D005465 ORTHO05D006612 5.6e-33 144.8 127 58.3
BcaB05g21584 Brassica carinata HOM05D005465 ORTHO05D006612 3.4e-30 135.6 127 52.8
CDE02G4042 Ceratophyllum demersum HOM05D005465 ORTHO05D006612 9.2e-28 127.5 98 62.2
Hma1.2p1_0029F.1_g018040 Hydrangea macrophylla HOM05D005465 ORTHO05D006612 1.2e-27 127.1 80 73.8
EL10Ac5g11896 Beta vulgaris HOM05D005465 ORTHO05D006612 3.5e-27 125.6 100 64.0
BcaB08g37291 Brassica carinata HOM05D005465 ORTHO05D006612 1.9e-25 119.8 81 65.4
Gohir.A09G243500 Gossypium hirsutum HOM05D005465 ORTHO05D006612 2.3e-23 112.8 77 63.6
Actinidia17587 Actinidia chinensis HOM05D005465 ORTHO05D006612 1.9e-20 103.2 67 68.7
SEGI_27681 Sequoiadendron giganteum HOM05D005465 ORTHO05D006612 3.3e-17 92.4 127 42.5
SEGI_31914 Sequoiadendron giganteum HOM05D005465 ORTHO05D006612 9.5e-17 90.9 119 44.5
BcaB01g05638 Brassica carinata HOM05D005465 ORTHO05D006612 4.7e-16 88.6 72 61.1
FAN08G0639 Fragaria x ananassa HOM05D005465 ORTHO05D006612 2.3e-15 86.3 66 57.6
Mapoly0019s0055 Marchantia polymorpha HOM05D005465 ORTHO05D006612 1.5e-14 83.6 129 37.2
Peaxi162Scf00991g00114 Petunia axillaris HOM05D005465 ORTHO05D006612 2.0e-14 83.2 124 45.2
TAR622G1303 Trochodendron aralioides HOM05D005465 ORTHO05D006612 2.6e-14 82.8 76 55.3
SMO263G0026 Selaginella moellendorffii HOM05D005465 ORTHO05D006612 3.4e-14 82.4 128 40.6
EL10Ac5g12104 Beta vulgaris HOM05D005465 ORTHO05D006612 4.4e-14 82.0 70 57.1
CBR_g37656 Chara braunii HOM05D005465 ORTHO05D006612 7.8e-11 71.2 94 40.4
Lsat_1_v5_gn_4_50580 Lactuca sativa HOM05D005465 ORTHO05D006612 3.0e-10 69.3 51 66.7
Pp3c16_5680 Physcomitrium patens HOM05D005465 ORTHO05D006612 3.0e-10 69.3 126 34.9
AagrBONN_evm.TU.Sc2ySwM_362.2833 Anthoceros agrestis HOM05D005465 ORTHO05D006612 1.1e-09 67.4 139 33.1
Cre12.g484700 Chlamydomonas reinhardtii HOM05D005465 ORTHO05D006612 1.9e-09 66.6 84 44.0
SGA_v2.0_scaffold187G40263 Striga asiatica HOM05D005465 ORTHO05D006612 3.3e-09 65.9 99 41.4
MCO16G501 Micromonas commoda HOM05D005465 ORTHO05D006612 1.2e-08 63.9 85 36.5
PRCOL_00003291 Prasinoderma coloniale HOM05D005465 ORTHO05D006612 2.0e-06 56.6 68 47.1


User provided reference genes

Program Settings