Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g081690.1 Solanum lycopersicum HOM05D005113 ORTHO05D006045 1.5e-44 182.6 97 100.0
Sopen10g032200 Solanum pennellii HOM05D005113 ORTHO05D006045 1.2e-41 172.9 94 97.9
PGSC0003DMG400028226 Solanum tuberosum HOM05D009103 ORTHO05D010883 1.4e-39 166.0 94 94.7
Peaxi162Scf00203g00418 Petunia axillaris HOM05D005113 ORTHO05D006045 4.9e-32 141.0 109 72.5
Nitab4.5_0000721g0120 Nicotiana tabacum HOM05D005113 ORTHO05D006045 2.5e-28 128.6 112 67.0
Solyc01g006760.3 Solanum lycopersicum HOM05D005113 ORTHO05D006045 2.8e-19 98.6 103 55.3
PGSC0003DMG400021340 Solanum tuberosum HOM05D005113 ORTHO05D006045 1.1e-18 96.7 109 54.1
Oeu020160.1 Olea europaea HOM05D005113 ORTHO05D006045 1.8e-18 95.9 111 52.3
Sopen01g002760 Solanum pennellii HOM05D005113 ORTHO05D006045 5.3e-18 94.4 103 52.4
MSTRG.26588 Avicennia marina HOM05D005113 ORTHO05D006045 4.2e-15 84.7 119 43.7
Dinv25078 Davidia involucrata HOM05D005113 ORTHO05D006045 9.3e-15 83.6 118 42.4
Atru.chr8.1293 Acer truncatum HOM05D005113 ORTHO05D006045 1.2e-14 83.2 121 43.0
Manes.08G036800 Manihot esculenta HOM05D005113 ORTHO05D006045 1.6e-14 82.8 113 44.2
Actinidia07952 Actinidia chinensis HOM05D005113 ORTHO05D006045 2.7e-14 82.0 104 50.0
Cc06_g06930 Coffea canephora HOM05D005113 ORTHO05D006045 2.7e-14 82.0 112 49.1
Thecc.05G109700 Theobroma cacao HOM05D005113 ORTHO05D006045 2.7e-14 82.0 121 45.5
Actinidia06192 Actinidia chinensis HOM05D005113 ORTHO05D006045 1.3e-13 79.7 101 49.5
GSVIVG01022551001 Vitis vinifera HOM05D005113 ORTHO05D006045 1.8e-13 79.3 114 46.5
TAR633G2365 Trochodendron aralioides HOM05D005113 ORTHO05D006045 5.1e-13 77.8 121 43.0
Migut.L01845 Erythranthe guttata HOM05D005113 ORTHO05D006045 6.7e-13 77.4 110 43.6
Cpa.g.sc222.18 Carica papaya HOM05D005113 ORTHO05D006045 1.5e-12 76.3 125 40.8
Dinv11892 Davidia involucrata HOM05D005113 ORTHO05D006045 1.5e-12 76.3 121 41.3
Oeu045023.1 Olea europaea HOM05D005113 ORTHO05D006045 1.5e-12 76.3 106 45.3
Migut.J00732 Erythranthe guttata HOM05D005113 ORTHO05D006045 2.5e-12 75.5 118 42.4
MD14G1044100 Malus domestica HOM05D005113 ORTHO05D006045 2.5e-12 75.5 123 42.3
Duzib106G0847 Durio zibethinus HOM05D005113 ORTHO05D006045 4.3e-12 74.7 117 42.7
MD12G1045200 Malus domestica HOM05D005113 ORTHO05D006045 5.7e-12 74.3 123 41.5
Rhsim04G0135100 Rhododendron simsii HOM05D005113 ORTHO05D006045 5.7e-12 74.3 121 45.5
CANSAT64G1258 Cannabis sativa HOM05D005113 ORTHO05D006045 2.2e-11 72.4 111 40.5
Sabra16G0067600 Salix brachista HOM05D005113 ORTHO05D006045 2.2e-11 72.4 115 41.7
PSO339G6075 Papaver somniferum HOM05D005113 ORTHO05D006045 3.7e-11 71.6 123 40.7
ECA238G1367 Erigeron canadensis HOM05D005113 ORTHO05D006045 4.8e-11 71.2 105 42.9
FAN05G0955 Fragaria x ananassa HOM05D005113 ORTHO05D006045 4.8e-11 71.2 125 42.4
FAN05G3212 Fragaria x ananassa HOM05D005113 ORTHO05D006045 4.8e-11 71.2 125 42.4
FAN02G2823 Fragaria x ananassa HOM05D005113 ORTHO05D006045 6.3e-11 70.9 126 42.1
RcHm_v2.0_Chr3g0477281 Rosa chinensis HOM05D005113 ORTHO05D006045 6.3e-11 70.9 125 42.4
FAN09G1514 Fragaria x ananassa HOM05D005113 ORTHO05D006045 8.2e-11 70.5 125 42.4
PSO384G2214 Papaver somniferum HOM05D005113 ORTHO05D006045 8.2e-11 70.5 121 40.5
Aqoxy1G00593 Aquilegia oxysepala HOM05D005113 ORTHO05D006045 1.1e-10 70.1 120 39.2
FvH4_6g20940 Fragaria vesca HOM05D005113 ORTHO05D006045 1.1e-10 70.1 125 41.6
FAN14G1795 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.1e-10 70.1 125 41.6
CSS0024187 Camellia sinensis var. sinensis HOM05D005113 ORTHO05D006045 1.4e-10 69.7 105 43.8
Lsat_1_v5_gn_2_101981 Lactuca sativa HOM05D005113 ORTHO05D006045 1.8e-10 69.3 108 40.7
HanXRQChr07g0196541 Helianthus annuus HOM05D005113 ORTHO05D006045 2.4e-10 68.9 107 41.1
Medtr7g106840 Medicago truncatula HOM05D005113 ORTHO05D006045 4.1e-10 68.2 132 38.6
Nn1g06541 Nelumbo nucifera HOM05D005113 ORTHO05D006045 5.3e-10 67.8 124 37.9
Nn2g14410 Nelumbo nucifera HOM05D005113 ORTHO05D006045 6.9e-10 67.4 126 38.1
Eucgr.A02548 Eucalyptus grandis HOM05D005113 ORTHO05D006045 9.0e-10 67.0 106 36.8
Oeu044708.1 Olea europaea HOM05D005113 ORTHO05D006045 1.2e-09 66.6 104 42.3
Haze_07788 Corylus avellana HOM05D005113 ORTHO05D006045 2.0e-09 65.9 100 44.0
Haze_20118 Corylus avellana HOM05D005113 ORTHO05D006045 2.6e-09 65.5 101 44.6
Manes.09G042200 Manihot esculenta HOM05D005113 ORTHO05D006045 3.4e-09 65.1 105 39.0
Gohir.A11G315200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 4.5e-09 64.7 123 39.8
THA.LOC104803375 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 5.9e-09 64.3 121 43.8
TAR623G1290 Trochodendron aralioides HOM05D005113 ORTHO05D006045 5.9e-09 64.3 69 52.2
DCAR_020680 Daucus carota HOM05D005113 ORTHO05D006045 7.6e-09 63.9 117 38.5
Nitab4.5_0000429g0090 Nicotiana tabacum HOM05D048864 ORTHO05D006045 7.6e-09 63.9 108 40.7
Ciclev10013205m.g Citrus clementina HOM05D005113 ORTHO05D006045 1.3e-08 63.2 76 50.0
CiPaw.10G020600 Carya illinoinensis HOM05D005113 ORTHO05D006045 1.7e-08 62.8 69 53.6
Psat3g027480 Pisum sativum HOM05D005113 ORTHO05D006045 2.2e-08 62.4 135 34.1
Gohir.D11G332200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 3.8e-08 61.6 119 39.5
Potri.016G066200 Populus trichocarpa HOM05D005113 ORTHO05D006045 3.8e-08 61.6 70 48.6
TAR369G1050 Trochodendron aralioides HOM05D005113 ORTHO05D006045 6.5e-08 60.8 82 48.8
Aa31LG10G7390 Aethionema arabicum HOM05D005113 ORTHO05D006045 8.5e-08 60.5 80 48.8
BcaB01g00380 Brassica carinata HOM05D005113 ORTHO05D006045 1.1e-07 60.1 91 45.1
BcaC07g39601 Brassica carinata HOM05D005113 ORTHO05D006045 1.1e-07 60.1 69 55.1
C08p27550 Brassica napus HOM05D005113 ORTHO05D006045 1.1e-07 60.1 69 55.1
BolC8t50376H Brassica oleracea HOM05D005113 ORTHO05D006045 1.1e-07 60.1 69 55.1
Gohir.D09G128500 Gossypium hirsutum HOM05D005113 ORTHO05D006045 1.1e-07 60.1 116 39.7
MBI05_g03323_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 1.1e-07 60.1 117 35.9
Sp5g09930 Schrenkiella parvula HOM05D005113 ORTHO05D006045 1.1e-07 60.1 69 55.1
TWI53G1462 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 1.1e-07 60.1 66 51.5
A09p45370 Brassica napus HOM05D005113 ORTHO05D006045 1.4e-07 59.7 85 48.2
BraA09t40001Z Brassica rapa HOM05D005113 ORTHO05D006045 1.4e-07 59.7 85 48.2
Duzib093G2033 Durio zibethinus HOM05D005113 ORTHO05D006045 1.4e-07 59.7 66 51.5
Lj1g0007298 Lotus japonicus HOM05D005113 ORTHO05D006045 1.4e-07 59.7 135 32.6
Glyma.10G086500 Glycine max HOM05D005113 ORTHO05D006045 1.9e-07 59.3 122 35.2
QL07p026499 Quercus lobata HOM05D005113 ORTHO05D006045 1.9e-07 59.3 106 38.7
AUR62036329 Chenopodium quinoa HOM05D005113 ORTHO05D006045 2.5e-07 58.9 61 52.5
Gorai.006G147100 Gossypium raimondii HOM05D005113 ORTHO05D006045 2.5e-07 58.9 109 40.4
Potri.006G200000 Populus trichocarpa HOM05D005113 ORTHO05D006045 2.5e-07 58.9 90 41.1
AT3G52360 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 3.2e-07 58.5 69 55.1
BcaB02g08576 Brassica carinata HOM05D005113 ORTHO05D006045 3.2e-07 58.5 69 53.6
BcaC02g09265 Brassica carinata HOM05D005113 ORTHO05D006045 3.2e-07 58.5 69 53.6
A04p07080 Brassica napus HOM05D005113 ORTHO05D006045 3.2e-07 58.5 69 53.6
C04p40660 Brassica napus HOM05D005113 ORTHO05D006045 3.2e-07 58.5 69 53.6
BolC4t25648H Brassica oleracea HOM05D005113 ORTHO05D006045 3.2e-07 58.5 69 53.6
BraA04t16405Z Brassica rapa HOM05D005113 ORTHO05D006045 3.2e-07 58.5 69 53.6
TPR.G34441 Trifolium pratense HOM05D005113 ORTHO05D006045 3.2e-07 58.5 126 33.3
AL5G33010 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 4.2e-07 58.2 69 53.6
Thhalv10010863m.g Eutrema salsugineum HOM05D005113 ORTHO05D006045 4.2e-07 58.2 69 53.6
Lalb_Chr20g0111221 Lupinus albus HOM05D005113 ORTHO05D006045 4.2e-07 58.2 134 32.8
Lalb_Chr25g0287851 Lupinus albus HOM05D005113 ORTHO05D006045 4.2e-07 58.2 134 34.3
MBI11_g26202_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 4.2e-07 58.2 121 35.5
MBI11_g46321_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 4.2e-07 58.2 121 35.5
Carub.0005s1871 Capsella rubella HOM05D005113 ORTHO05D006045 5.5e-07 57.8 78 52.6
CARHR162120 Cardamine hirsuta HOM05D005113 ORTHO05D006045 5.5e-07 57.8 69 53.6
Nitab4.5_0010272g0010 Nicotiana tabacum HOM05D048864 ORTHO05D006045 5.5e-07 57.8 108 40.7
DCAR_009075 Daucus carota HOM05D000059 ORTHO05D012409 7.2e-07 57.4 118 37.3
Cfa019390 Carpinus fangiana HOM05D005113 ORTHO05D006045 9.3e-07 57.0 98 41.8
CiPaw.09G023700 Carya illinoinensis HOM05D005113 ORTHO05D006045 9.3e-07 57.0 98 39.8
COL.COLO4_29500 Corchorus olitorius HOM05D005113 ORTHO05D006045 9.3e-07 57.0 100 41.0
Phvul.001G198200 Phaseolus vulgaris HOM05D005113 ORTHO05D006045 9.3e-07 57.0 132 34.1
TWI74G1336 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 9.3e-07 57.0 114 35.1
AL4G31960 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 1.2e-06 56.6 70 51.4
Sabra06G0153800 Salix brachista HOM05D005113 ORTHO05D006045 1.2e-06 56.6 70 44.3
THA.LOC104803378 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 1.6e-06 56.2 82 46.3
TWI77G0719 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 1.6e-06 56.2 66 47.0
arahy.Tifrunner.gnm1.ann1.7K7EQP Arachis hypogaea HOM05D005113 ORTHO05D006045 2.1e-06 55.8 135 34.8
Prupe.7G090200 Prunus persica HOM05D005113 ORTHO05D006045 2.7e-06 55.5 107 38.3
PGR142G0458 Punica granatum HOM05D005113 ORTHO05D006045 4.6e-06 54.7 102 34.3
AUR62038432 Chenopodium quinoa HOM05D005113 ORTHO05D006045 6.1e-06 54.3 79 40.5
Gohir.D04G093000 Gossypium hirsutum HOM05D005113 ORTHO05D006045 6.1e-06 54.3 88 40.9
A04p27340 Brassica napus HOM05D005113 ORTHO05D006045 7.9e-06 53.9 73 50.7


User provided reference genes

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