Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g081380.2 Solanum lycopersicum HOM05D005516 ORTHO05D006713 9.7e-78 293.5 158 100.0
Sopen10g031880 Solanum pennellii HOM05D005516 ORTHO05D006713 5.9e-75 284.3 158 94.9
PGSC0003DMG400028211 Solanum tuberosum HOM05D005516 ORTHO05D006713 4.2e-73 278.1 158 92.4
CAN.G128.137 Capsicum annuum HOM05D005516 ORTHO05D006713 1.0e-58 230.3 156 81.4
Peaxi162Scf00575g00619 Petunia axillaris HOM05D005516 ORTHO05D006713 2.2e-53 212.6 136 79.4
Nitab4.5_0000613g0140 Nicotiana tabacum HOM05D005516 ORTHO05D006713 5.5e-49 198.0 139 74.8
Nitab4.5_0000811g0010 Nicotiana tabacum HOM05D005516 ORTHO05D006713 1.0e-47 193.7 162 72.2
Dinv13791 Davidia involucrata HOM05D005516 ORTHO05D006713 8.0e-40 167.5 164 58.5
Oeu044207.1 Olea europaea HOM05D005516 ORTHO05D006713 4.4e-38 161.8 176 54.5
Gorai.013G196100 Gossypium raimondii HOM05D005516 ORTHO05D006713 1.4e-36 156.8 129 69.0
Rhsim08G0097500 Rhododendron simsii HOM05D005516 ORTHO05D006713 1.8e-36 156.4 106 73.6
Duzib106G1703 Durio zibethinus HOM05D005516 ORTHO05D006713 5.4e-36 154.8 165 54.5
vmacro08774 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 1.6e-35 153.3 113 66.4
Hma1.2p1_0526F.1_g172910 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 2.0e-35 152.9 145 60.0
Cfa017721 Carpinus fangiana HOM05D005516 ORTHO05D006713 3.5e-35 152.1 110 74.5
Nitab4.5_0000404g0040 Nicotiana tabacum HOM05D005516 ORTHO05D006713 1.7e-34 149.8 82 87.8
arahy.Tifrunner.gnm1.ann1.BMR428 Arachis hypogaea HOM05D005516 ORTHO05D006713 2.3e-34 149.4 154 55.8
Ca_08316_v3 Cicer arietinum L. HOM05D005516 ORTHO05D006713 2.3e-34 149.4 148 60.8
CSS0039228 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 3.8e-34 148.7 84 79.8
CSS0003853 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 8.6e-34 147.5 87 77.0
CANSAT78G1214 Cannabis sativa HOM05D005516 ORTHO05D006713 8.6e-34 147.5 99 77.8
PSO339G3932 Papaver somniferum HOM05D005516 ORTHO05D006713 1.1e-33 147.1 104 71.2
COL.COLO4_20092 Corchorus olitorius HOM05D005516 ORTHO05D006713 1.5e-33 146.7 127 61.4
vmacro04358 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 2.5e-33 146.0 106 67.0
PSO384G4582 Papaver somniferum HOM05D005516 ORTHO05D006713 7.3e-33 144.4 104 70.2
vmacro18891 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 7.3e-33 144.4 106 66.0
Duzib128G1828 Durio zibethinus HOM05D005516 ORTHO05D006713 1.2e-32 143.7 164 55.5
MSTRG.6254 Avicennia marina HOM05D005516 ORTHO05D006713 2.1e-32 142.9 160 55.6
Peaxi162Scf00575g00620 Petunia axillaris HOM05D005516 ORTHO05D006713 2.1e-32 142.9 135 59.3
GSVIVG01029962001 Vitis vinifera HOM05D005516 ORTHO05D006713 2.1e-32 142.9 111 73.9
THA.LOC104820795 Tarenaya hassleriana HOM05D005516 ORTHO05D006713 2.8e-32 142.5 100 77.0
BcaB01g04919 Brassica carinata HOM05D005516 ORTHO05D006713 3.6e-32 142.1 100 75.0
AL6G28930 Arabidopsis lyrata HOM05D005516 ORTHO05D006713 4.7e-32 141.7 100 77.0
Hma1.2p1_0526F.1_g172920 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 6.1e-32 141.4 84 76.2
CiPaw.09G166400 Carya illinoinensis HOM05D005516 ORTHO05D006713 1.0e-31 140.6 101 66.3
Duzib177G0157 Durio zibethinus HOM05D005516 ORTHO05D006713 1.0e-31 140.6 129 64.3
Atru.chr2.1522 Acer truncatum HOM05D005516 ORTHO05D006713 1.4e-31 140.2 85 75.3
Actinidia06205 Actinidia chinensis HOM05D005516 ORTHO05D006713 5.2e-31 138.3 144 54.9
CSS0031486 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 5.2e-31 138.3 88 72.7
MD12G1011900 Malus domestica HOM05D005516 ORTHO05D006713 6.8e-31 137.9 113 71.7
Manes.08G152800 Manihot esculenta HOM05D005516 ORTHO05D006713 8.9e-31 137.5 134 61.9
ClCG04G004680 Citrullus lanatus HOM05D005516 ORTHO05D006713 1.2e-30 137.1 86 70.9
HanXRQChr13g0406451 Helianthus annuus HOM05D005516 ORTHO05D006713 1.2e-30 137.1 86 74.4
Haze_20402 Corylus avellana HOM05D005516 ORTHO05D006713 1.5e-30 136.7 110 70.0
MSTRG.26204 Avicennia marina HOM05D005516 ORTHO05D006713 2.0e-30 136.3 160 52.5
Lalb_Chr14g0364851 Lupinus albus HOM05D005516 ORTHO05D006713 2.0e-30 136.3 108 66.7
DCAR_016961 Daucus carota HOM05D005516 ORTHO05D006713 2.6e-30 136.0 73 82.2
Thecc.05G241500 Theobroma cacao HOM05D005516 ORTHO05D006713 2.6e-30 136.0 134 61.2
Aa31LG11G11740 Aethionema arabicum HOM05D005516 ORTHO05D006713 3.4e-30 135.6 110 64.5
Lsat_1_v5_gn_5_154420 Lactuca sativa HOM05D005516 ORTHO05D006713 5.7e-30 134.8 87 74.7
Potri.019G040400 Populus trichocarpa HOM05D005516 ORTHO05D006713 7.5e-30 134.4 104 73.1
QL07p017420 Quercus lobata HOM05D005516 ORTHO05D006713 7.5e-30 134.4 109 69.7
Zm00001eb052720 Zea mays HOM05D005516 ORTHO05D006713 7.5e-30 134.4 110 60.9
Sabra13G0057700 Salix brachista HOM05D005516 ORTHO05D006713 1.3e-29 133.7 85 72.9
Hund20711 Selenicereus undatus HOM05D005516 ORTHO05D006713 1.3e-29 133.7 126 56.3
Cc06_g21500 Coffea canephora HOM05D005516 ORTHO05D006713 1.7e-29 133.3 85 70.6
DCAR_020653 Daucus carota HOM05D005516 ORTHO05D006713 1.7e-29 133.3 112 67.0
Eucgr.K01534 Eucalyptus grandis HOM05D005516 ORTHO05D006713 1.7e-29 133.3 110 70.9
Glyma.16G035800 Glycine max HOM05D005516 ORTHO05D006713 2.9e-29 132.5 131 53.4
Gohir.A08G219566 Gossypium hirsutum HOM05D005516 ORTHO05D006713 2.9e-29 132.5 124 54.8
MELO3C008865.2 Cucumis melo HOM05D005516 ORTHO05D006713 3.7e-29 132.1 104 70.2
CsaV3_4G031610 Cucumis sativus L. HOM05D005516 ORTHO05D006713 3.7e-29 132.1 104 70.2
Lj1g0004780 Lotus japonicus HOM05D005516 ORTHO05D006713 3.7e-29 132.1 138 59.4
Potri.013G066000 Populus trichocarpa HOM05D005516 ORTHO05D006713 4.9e-29 131.7 167 52.1
SGA_v2.0_scaffold69G23215 Striga asiatica HOM05D000039 ORTHO05D000370 4.9e-29 131.7 85 71.8
Hma1.2p1_0106F.1_g051205 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 6.4e-29 131.3 84 73.8
MD14G1009500 Malus domestica HOM05D005516 ORTHO05D006713 6.4e-29 131.3 113 67.3
Gorai.004G252300 Gossypium raimondii HOM05D005516 ORTHO05D006713 8.3e-29 131.0 163 50.3
MBI05_g16554_MAGBIO Magnolia biondii HOM05D005516 ORTHO05D006713 8.3e-29 131.0 164 51.2
Prupe.7G015800 Prunus persica HOM05D005516 ORTHO05D006713 1.1e-28 130.6 140 59.3
HPP92_000977 Vanilla planifolia HOM05D005516 ORTHO05D006713 1.1e-28 130.6 95 73.7
CDE07G0498 Ceratophyllum demersum HOM05D005516 ORTHO05D006713 1.4e-28 130.2 92 76.1
Sp6g26410 Schrenkiella parvula HOM05D005516 ORTHO05D006713 1.4e-28 130.2 100 72.0
SGA_v2.0_scaffold66G22373 Striga asiatica HOM05D005516 ORTHO05D006713 1.4e-28 130.2 100 63.0
Ciclev10022543m.g Citrus clementina HOM05D005516 ORTHO05D006713 2.4e-28 129.4 104 71.2
ECA248G2342 Erigeron canadensis HOM05D005516 ORTHO05D006713 2.4e-28 129.4 116 64.7
HPP92_001001 Vanilla planifolia HOM05D005516 ORTHO05D006713 2.4e-28 129.4 95 72.6
VMungo1383G1686 Vigna mungo HOM05D005516 ORTHO05D006713 2.4e-28 129.4 121 62.8
TWI32G0326 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 3.2e-28 129.0 104 71.2
Sed0005064 Sechium edule HOM05D005516 ORTHO05D006713 4.1e-28 128.6 103 68.9
FAN19G1175 Fragaria x ananassa HOM05D005516 ORTHO05D006713 5.4e-28 128.3 81 71.6
Phvul.001G105600 Phaseolus vulgaris HOM05D005516 ORTHO05D006713 5.4e-28 128.3 127 59.1
TWI60G0181 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 5.4e-28 128.3 104 70.2
C02p25840 Brassica napus HOM05D005516 ORTHO05D006713 9.2e-28 127.5 101 71.3
TPR.G34794 Trifolium pratense HOM05D005516 ORTHO05D006713 9.2e-28 127.5 81 72.8
FAN23G0165 Fragaria x ananassa HOM05D005516 ORTHO05D006713 1.2e-27 127.1 80 71.2
Zm00001eb218270 Zea mays HOM05D005516 ORTHO05D006713 1.2e-27 127.1 81 71.6
CARHR195330 Cardamine hirsuta HOM05D005516 ORTHO05D006713 1.6e-27 126.7 80 72.5
FAN26G2397 Fragaria x ananassa HOM05D005516 ORTHO05D006713 1.6e-27 126.7 80 71.2
Psat3g086560 Pisum sativum HOM05D005516 ORTHO05D006713 1.6e-27 126.7 120 61.7
FvH4_1g29880 Fragaria vesca HOM05D005516 ORTHO05D006713 2.0e-27 126.3 80 71.2
Pp3c8_890 Physcomitrium patens HOM05D005516 ORTHO05D006713 2.7e-27 125.9 96 67.7
RcHm_v2.0_Chr3g0496031 Rosa chinensis HOM05D005516 ORTHO05D006713 3.5e-27 125.6 117 56.4
Hund20712 Selenicereus undatus HOM05D005516 ORTHO05D006713 4.6e-27 125.2 78 69.2
arahy.Tifrunner.gnm1.ann1.253MNK Arachis hypogaea HOM05D005516 ORTHO05D006713 5.9e-27 124.8 154 51.9
Glyma.19G117300 Glycine max HOM05D005516 ORTHO05D006713 5.9e-27 124.8 128 59.4
Sc07g0007460 Simmondsia chinensis HOM05D005516 ORTHO05D006713 1.0e-26 124.0 112 58.0
Thhalv10014907m.g Eutrema salsugineum HOM05D005516 ORTHO05D006713 2.3e-26 122.9 100 69.0
Ah.13g074870 Amaranthus hybridus HOM05D005516 ORTHO05D006713 3.0e-26 122.5 123 53.7
Cpa.g.sc161.38 Carica papaya HOM05D005516 ORTHO05D006713 3.0e-26 122.5 76 73.7
Medtr7g086700 Medicago truncatula HOM05D005516 ORTHO05D006713 3.0e-26 122.5 94 75.5
Os03g0656201 Oryza sativa ssp. japonica HOM05D005516 ORTHO05D006713 3.0e-26 122.5 89 66.3
AT5G17840 Arabidopsis thaliana HOM05D005516 ORTHO05D006713 3.9e-26 122.1 100 68.0
SEGI_32239 Sequoiadendron giganteum HOM05D005516 ORTHO05D006713 3.9e-26 122.1 101 59.4
A03p08520 Brassica napus HOM05D005516 ORTHO05D006713 5.0e-26 121.7 100 68.0
Carub.0006s1607 Capsella rubella HOM05D005516 ORTHO05D006713 5.0e-26 121.7 110 64.5
BcaB01g05159 Brassica carinata HOM05D005516 ORTHO05D006713 6.6e-26 121.3 100 69.0
C03p09930 Brassica napus HOM05D005516 ORTHO05D006713 6.6e-26 121.3 100 69.0
BolC3t13481H Brassica oleracea HOM05D005516 ORTHO05D006713 6.6e-26 121.3 100 69.0
BraA03t10176Z Brassica rapa HOM05D005516 ORTHO05D006713 6.6e-26 121.3 100 69.0
Gohir.A13G161100 Gossypium hirsutum HOM05D005516 ORTHO05D006713 9.5e-25 117.5 143 48.3
unitig_0.g583 Utricularia gibba HOM05D005516 ORTHO05D006713 9.5e-25 117.5 137 51.8
AUR62032011 Chenopodium quinoa HOM05D005516 ORTHO05D006713 1.6e-24 116.7 134 46.3
Gohir.D13G166400 Gossypium hirsutum HOM05D005516 ORTHO05D006713 2.1e-24 116.3 143 49.0
BcaB05g23282 Brassica carinata HOM05D005516 ORTHO05D006713 3.6e-24 115.5 101 59.4
EL10Ac3g06621 Beta vulgaris HOM05D005516 ORTHO05D006713 1.0e-23 114.0 80 65.0
AUR62018088 Chenopodium quinoa HOM05D005516 ORTHO05D006713 4.0e-23 112.1 80 58.8
Oeu029775.1 Olea europaea HOM05D005516 ORTHO05D006713 8.3e-21 104.4 116 52.6
Aqoxy1G00508 Aquilegia oxysepala HOM05D005516 ORTHO05D006713 1.1e-20 104.0 68 73.5
Mapoly0020s0169 Marchantia polymorpha HOM05D005516 ORTHO05D006713 1.9e-20 103.2 78 60.3
Lalb_Chr24g0401101 Lupinus albus HOM05D005516 ORTHO05D006713 1.6e-19 100.1 85 71.8
Gohir.D02G044500 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.0e-18 97.4 81 66.7
Actinidia07963 Actinidia chinensis HOM05D005516 ORTHO05D006713 3.9e-18 95.5 120 49.2
Sed0000674 Sechium edule HOM05D005516 ORTHO05D006713 3.9e-18 95.5 116 44.8
SalBow6G3354 Salvia bowleyana HOM05D005516 ORTHO05D006713 2.8e-16 89.4 56 69.6
Ciclev10013836m.g Citrus clementina HOM05D005516 ORTHO05D006713 1.2e-14 84.0 80 52.5
Gohir.A06G040900 Gossypium hirsutum HOM05D005516 ORTHO05D006713 7.5e-14 81.3 59 61.0
Gohir.D05G109301 Gossypium hirsutum HOM05D005516 ORTHO05D006713 7.5e-14 81.3 59 61.0
CBR_g28089 Chara braunii HOM05D005516 ORTHO05D006713 1.1e-12 77.4 64 68.8
BcaC03g15036 Brassica carinata HOM05D005516 ORTHO05D006713 7.1e-12 74.7 55 60.0
BolC2t08658H Brassica oleracea HOM05D005516 ORTHO05D006713 7.1e-12 74.7 55 60.0
TAR633G1766 Trochodendron aralioides HOM05D005516 ORTHO05D006713 3.9e-10 68.9 44 70.5
SMO367G1142 Selaginella moellendorffii HOM05D005516 ORTHO05D006713 1.6e-08 63.5 39 69.2
Nn6g32378 Nelumbo nucifera HOM05D005516 ORTHO05D006713 3.4e-06 55.8 102 37.3


User provided reference genes

Program Settings