Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g080810.2 Solanum lycopersicum HOM05D004518 ORTHO05D005434 2.5e-164 582.0 294 100.0
Sopen10g031320 Solanum pennellii HOM05D004518 ORTHO05D005434 1.3e-160 569.7 294 98.0
PGSC0003DMG400023695 Solanum tuberosum HOM05D004518 ORTHO05D005434 4.9e-160 567.8 294 97.3
Peaxi162Scf00696g00027 Petunia axillaris HOM05D004518 ORTHO05D005434 9.0e-146 520.4 297 88.2
Nitab4.5_0001173g0020 Nicotiana tabacum HOM05D004518 ORTHO05D005434 4.2e-135 485.0 294 83.0
Cc06_g19630 Coffea canephora HOM05D004518 ORTHO05D005434 1.5e-127 459.9 295 76.9
Dinv05720 Davidia involucrata HOM05D004518 ORTHO05D005434 4.7e-126 454.9 295 74.9
CAN.G128.73 Capsicum annuum HOM05D004518 ORTHO05D005434 2.0e-124 449.5 240 92.1
Actinidia06430 Actinidia chinensis HOM05D004518 ORTHO05D005434 8.2e-123 444.1 296 74.7
Dinv03206 Davidia involucrata HOM05D004518 ORTHO05D005434 5.9e-121 438.0 295 73.6
CSS0002759 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 1.6e-118 429.9 296 72.0
CSS0023469 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 1.6e-118 429.9 296 72.0
GSVIVG01025741001 Vitis vinifera HOM05D004518 ORTHO05D005434 1.0e-117 427.2 296 71.6
Hma1.2p1_0252F.1_g102810 Hydrangea macrophylla HOM05D004518 ORTHO05D005434 2.3e-117 426.0 296 71.6
Atru.chr1.1396 Acer truncatum HOM05D004518 ORTHO05D005434 4.4e-116 421.8 295 70.2
Cfa019996 Carpinus fangiana HOM05D004518 ORTHO05D005434 4.4e-116 421.8 295 69.8
PGR031G0872 Punica granatum HOM05D004518 ORTHO05D005434 5.7e-116 421.4 294 69.0
Lsat_1_v5_gn_9_30021 Lactuca sativa HOM05D004518 ORTHO05D005434 1.7e-115 419.9 292 71.9
Thecc.05G127700 Theobroma cacao HOM05D004518 ORTHO05D005434 1.7e-115 419.9 296 70.6
CANSAT64G1638 Cannabis sativa HOM05D004518 ORTHO05D005434 2.8e-115 419.1 295 71.9
Migut.J01644 Erythranthe guttata HOM05D004518 ORTHO05D005434 1.4e-114 416.8 295 70.5
COL.COLO4_07077 Corchorus olitorius HOM05D004518 ORTHO05D005434 5.4e-114 414.8 296 70.3
ClCG10G013700 Citrullus lanatus HOM05D004518 ORTHO05D005434 4.5e-113 411.8 295 69.5
ECA247G2040 Erigeron canadensis HOM05D004518 ORTHO05D005434 5.9e-113 411.4 295 70.8
SGA_v2.0_scaffold69G23161 Striga asiatica HOM05D004518 ORTHO05D005434 7.7e-113 411.0 291 70.4
Manes.09G003700 Manihot esculenta HOM05D004518 ORTHO05D005434 1.0e-112 410.6 292 69.2
Duzib106G1523 Durio zibethinus HOM05D004518 ORTHO05D005434 1.3e-112 410.2 296 68.2
Ciclev10012184m.g Citrus clementina HOM05D004518 ORTHO05D005434 1.7e-112 409.8 284 71.1
MELO3C026597.2 Cucumis melo HOM05D004518 ORTHO05D005434 2.9e-112 409.1 295 69.5
AT3G56740 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 3.8e-112 408.7 295 69.5
Gohir.D13G001500 Gossypium hirsutum HOM05D004518 ORTHO05D005434 3.8e-112 408.7 296 69.3
Gorai.013G001400 Gossypium raimondii HOM05D004518 ORTHO05D005434 3.8e-112 408.7 296 69.3
Eucgr.A02232 Eucalyptus grandis HOM05D004518 ORTHO05D005434 6.5e-112 407.9 292 68.8
Oeu022968.1 Olea europaea HOM05D004518 ORTHO05D005434 6.5e-112 407.9 295 68.8
Peaxi162Scf00076g00330 Petunia axillaris HOM05D004518 ORTHO05D005434 6.5e-112 407.9 286 75.5
HanXRQChr10g0292841 Helianthus annuus HOM05D004518 ORTHO05D005434 8.5e-112 407.5 296 68.9
PSO339G3176 Papaver somniferum HOM05D004518 ORTHO05D005434 8.5e-112 407.5 296 69.9
AL5G38100 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 1.5e-111 406.8 295 69.5
Sed0000448 Sechium edule HOM05D004518 ORTHO05D005434 3.2e-111 405.6 295 67.5
Carub.0005s2348 Capsella rubella HOM05D004518 ORTHO05D005434 5.5e-111 404.8 295 68.8
Thhalv10006131m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 5.5e-111 404.8 295 69.2
CiPaw.10G040700 Carya illinoinensis HOM05D004518 ORTHO05D005434 7.2e-111 404.4 295 68.5
CsaV3_3G042950 Cucumis sativus L. HOM05D004518 ORTHO05D005434 7.2e-111 404.4 292 69.2
Rhsim07G0181600 Rhododendron simsii HOM05D004518 ORTHO05D005434 7.2e-111 404.4 317 65.3
TWI53G0703 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 7.2e-111 404.4 293 70.3
Glyma.19G129500 Glycine max HOM05D004518 ORTHO05D005434 9.4e-111 404.1 295 68.8
CiPaw.09G048700 Carya illinoinensis HOM05D004518 ORTHO05D005434 1.2e-110 403.7 295 66.8
SGA_v2.0_scaffold66G22264 Striga asiatica HOM05D004518 ORTHO05D005434 1.2e-110 403.7 286 73.1
PSO384G3583 Papaver somniferum HOM05D004518 ORTHO05D005434 1.6e-110 403.3 296 70.3
TWI74G1405 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 3.6e-110 402.1 294 69.7
Potri.006G040100 Populus trichocarpa HOM05D004518 ORTHO05D005434 6.1e-110 401.4 295 67.1
MD14G1089500 Malus domestica HOM05D004518 ORTHO05D005434 8.0e-110 401.0 295 66.1
Medtr7g089550 Medicago truncatula HOM05D004518 ORTHO05D005434 1.0e-109 400.6 295 68.1
CARHR166870 Cardamine hirsuta HOM05D004518 ORTHO05D005434 1.4e-109 400.2 295 67.8
RcHm_v2.0_Chr2g0125741 Rosa chinensis HOM05D004518 ORTHO05D005434 2.3e-109 399.4 295 66.8
EL10Ac3g07249 Beta vulgaris HOM05D004518 ORTHO05D005434 3.0e-109 399.1 294 67.0
unitig_744.g24180 Utricularia gibba HOM05D004518 ORTHO05D005434 3.0e-109 399.1 296 67.9
Glyma.03G126400 Glycine max HOM05D004518 ORTHO05D005434 4.0e-109 398.7 295 68.1
Lalb_Chr14g0365751 Lupinus albus HOM05D004518 ORTHO05D005434 5.2e-109 398.3 295 67.1
Prupe.7G034400 Prunus persica HOM05D004518 ORTHO05D005434 6.8e-109 397.9 295 67.1
Phvul.001G121800 Phaseolus vulgaris HOM05D004518 ORTHO05D005434 1.2e-108 397.1 296 67.2
Lj1g0025115 Lotus japonicus HOM05D004518 ORTHO05D005434 5.7e-108 394.8 295 67.1
BcaC07g40121 Brassica carinata HOM05D004518 ORTHO05D005434 7.5e-108 394.4 295 67.1
MD12G1096200 Malus domestica HOM05D004518 ORTHO05D005434 7.5e-108 394.4 295 66.8
FAN05G1433 Fragaria x ananassa HOM05D004518 ORTHO05D005434 9.8e-108 394.0 295 65.4
THA.LOC104803258 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 1.3e-107 393.7 296 68.6
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 2.2e-107 392.9 354 58.5
TAR623G1611 Trochodendron aralioides HOM05D004518 ORTHO05D005434 2.2e-107 392.9 293 67.9
Sp5g05830 Schrenkiella parvula HOM05D004518 ORTHO05D005434 2.8e-107 392.5 295 66.8
MSTRG.19796 Avicennia marina HOM05D004518 ORTHO05D005434 6.3e-107 391.3 295 68.1
VMungo1383G1992 Vigna mungo HOM05D004518 ORTHO05D005434 8.3e-107 391.0 297 66.3
MBI13_g09215_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 1.1e-106 390.6 298 66.8
Sed0017951 Sechium edule HOM05D004518 ORTHO05D005434 1.4e-106 390.2 292 67.1
BcaC07g39982 Brassica carinata HOM05D004518 ORTHO05D005434 2.4e-106 389.4 295 67.5
FvH4_6g25340 Fragaria vesca HOM05D004518 ORTHO05D005434 3.1e-106 389.0 295 64.7
TWI77G0289 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 3.1e-106 389.0 293 68.3
Aa31LG10G11580 Aethionema arabicum HOM05D004518 ORTHO05D005434 5.4e-106 388.3 295 66.8
MBI19_g14619_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 9.2e-106 387.5 325 63.7
A09p49580 Brassica napus HOM05D004518 ORTHO05D005434 2.0e-105 386.3 307 65.1
BraA09t40411Z Brassica rapa HOM05D004518 ORTHO05D005434 2.0e-105 386.3 307 65.1
Haze_20236 Corylus avellana HOM05D002003 ORTHO05D005434 7.7e-105 384.4 329 60.2
Lalb_Chr24g0400371 Lupinus albus HOM05D004518 ORTHO05D005434 7.7e-105 384.4 295 65.8
arahy.Tifrunner.gnm1.ann1.5HY1FK Arachis hypogaea HOM05D004518 ORTHO05D005434 6.6e-104 381.3 325 60.6
BolC8t50814H Brassica oleracea HOM05D004518 ORTHO05D005434 6.6e-104 381.3 307 64.8
FAN09G3120 Fragaria x ananassa HOM05D004518 ORTHO05D005434 6.6e-104 381.3 318 60.7
unitig_21.g20688 Utricularia gibba HOM05D004518 ORTHO05D005434 1.9e-103 379.8 296 65.5
THA.LOC104824396 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 2.8e-102 375.9 298 64.4
Thhalv10017035m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 6.8e-101 371.3 296 66.6
CARHR136250 Cardamine hirsuta HOM05D004518 ORTHO05D005434 2.0e-100 369.8 295 65.4
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 3.4e-100 369.0 301 64.1
Sp4g23460 Schrenkiella parvula HOM05D004518 ORTHO05D005434 3.7e-99 365.5 296 65.5
BraA05t19203Z Brassica rapa HOM05D004518 ORTHO05D005434 1.1e-98 364.0 298 64.4
Eucgr.K01645 Eucalyptus grandis HOM05D004518 ORTHO05D005434 1.4e-98 363.6 296 64.2
Nn7g36811 Nelumbo nucifera HOM05D004518 ORTHO05D005434 2.4e-98 362.8 272 67.3
AL4G39130 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 1.2e-97 360.5 295 64.1
AT2G41160 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 4.6e-97 358.6 295 63.7
Aa31LG3G910 Aethionema arabicum HOM05D004518 ORTHO05D005434 7.8e-97 357.8 293 64.2
Aa31LG3G900 Aethionema arabicum HOM05D004518 ORTHO05D005434 3.9e-96 355.5 311 60.5
Carub.0004s2347 Capsella rubella HOM05D004518 ORTHO05D005434 2.5e-95 352.8 295 62.7
Potri.016G035800 Populus trichocarpa HOM05D004518 ORTHO05D005434 2.5e-95 352.8 295 62.0
BolC4t21891H Brassica oleracea HOM05D004518 ORTHO05D005434 4.3e-95 352.1 299 62.5
CDE08G0004 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 1.2e-94 350.5 299 62.2
Gohir.A13G002100 Gossypium hirsutum HOM05D004518 ORTHO05D005434 4.7e-94 348.6 295 61.7
A05p02070 Brassica napus HOM05D004518 ORTHO05D005434 1.5e-92 343.6 290 62.4
HPP92_018980 Vanilla planifolia HOM05D004518 ORTHO05D005434 2.6e-92 342.8 295 59.3
Duzib128G0186 Durio zibethinus HOM05D004518 ORTHO05D005434 4.4e-92 342.0 239 69.9
C04p02460 Brassica napus HOM05D004518 ORTHO05D005434 9.8e-92 340.9 291 62.2
BcaC02g12756 Brassica carinata HOM05D004518 ORTHO05D005434 1.7e-91 340.1 340 55.9
Zm00001eb128690 Zea mays HOM05D004518 ORTHO05D005434 2.2e-91 339.7 296 57.4
vmacro05025 Vaccinium macrocarpon HOM05D004518 ORTHO05D005434 6.4e-91 338.2 302 59.3
Os01g0268800 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 1.9e-90 336.7 296 58.8
Aqoxy2G00434 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 2.4e-90 336.3 241 68.0
QL07p011297 Quercus lobata HOM05D004518 ORTHO05D005434 2.4e-90 336.3 280 62.5
CDE08G0582 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 8.9e-85 317.8 297 59.6
FAN02G2919 Fragaria x ananassa HOM05D004518 ORTHO05D005434 3.4e-84 315.8 239 64.4
Sc13g0001070 Simmondsia chinensis HOM05D004518 ORTHO05D005434 7.1e-82 308.1 204 74.5
Mapoly0023s0107 Marchantia polymorpha HOM05D004518 ORTHO05D005434 1.2e-81 307.4 307 52.4
Hund24582 Selenicereus undatus HOM05D004518 ORTHO05D005434 3.0e-80 302.8 295 56.6
arahy.Tifrunner.gnm1.ann1.CJ2XLM Arachis hypogaea HOM05D004518 ORTHO05D005434 2.5e-79 299.7 317 53.3
AUR62030305 Chenopodium quinoa HOM05D004518 ORTHO05D005434 3.3e-79 299.3 294 53.7
Hund19087 Selenicereus undatus HOM05D004518 ORTHO05D005434 4.3e-79 298.9 294 53.4
Pp3c15_13440 Physcomitrium patens HOM05D004518 ORTHO05D005434 4.4e-76 288.9 298 51.3
AUR62018357 Chenopodium quinoa HOM05D004518 ORTHO05D005434 7.6e-76 288.1 294 52.7
Actinidia22259 Actinidia chinensis HOM05D004518 ORTHO05D005434 1.7e-75 287.0 248 64.5
SMO364G0164 Selaginella moellendorffii HOM05D004518 ORTHO05D005434 6.4e-75 285.0 300 49.7
Psat3g079720 Pisum sativum HOM05D004518 ORTHO05D005434 7.1e-74 281.6 196 70.9
HPP92_001027 Vanilla planifolia HOM05D004518 ORTHO05D005434 6.0e-73 278.5 268 54.9
DCAR_020579 Daucus carota HOM05D004518 ORTHO05D005434 7.8e-73 278.1 207 70.5
Pp3c9_17200 Physcomitrium patens HOM05D004518 ORTHO05D005434 3.9e-72 275.8 277 51.6
Sabra06G0027100 Salix brachista HOM05D004518 ORTHO05D005434 1.1e-71 274.2 277 56.7
Zm00001eb150410 Zea mays HOM05D004518 ORTHO05D005434 1.5e-71 273.9 250 56.8
Aqoxy2G02076 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 5.2e-69 265.4 208 64.9
TPR.G16082 Trifolium pratense HOM05D002003 ORTHO05D002037 5.2e-69 265.4 207 64.7
SHI48963 Sapria himalayana HOM05D004518 ORTHO05D005434 6.4e-67 258.5 371 42.9
SGA_v2.0_scaffold66G22363 Striga asiatica HOM05D004518 ORTHO05D005434 3.2e-66 256.1 329 48.0
ATR0307G082 Amborella trichopoda HOM05D004518 ORTHO05D005434 7.8e-65 251.5 209 61.2
AagrBONN_evm.TU.Sc2ySwM_344.4495 Anthoceros agrestis HOM05D004518 ORTHO05D005434 7.8e-65 251.5 238 53.4
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 1.6e-62 243.8 292 49.7
Lj1A1090G38 Lonicera japonica HOM05D004518 ORTHO05D005434 9.0e-61 238.0 291 49.1
Os01g0806000 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 7.9e-57 224.9 200 58.5
CBR_g11167 Chara braunii HOM05D004518 ORTHO05D005434 5.6e-55 218.8 319 39.5
Lj2A402T37 Lonicera japonica HOM05D004518 ORTHO05D005434 3.6e-54 216.1 179 64.8
CBR_g18715 Chara braunii HOM05D004518 ORTHO05D005434 1.3e-51 207.6 333 38.4
Pp3c26_11360 Physcomitrium patens HOM05D004518 ORTHO05D005434 2.4e-45 186.8 337 35.9
Cpa.g.sc92.78 Carica papaya HOM05D004518 ORTHO05D005434 1.9e-39 167.2 126 64.3
MSTRG.5996 Avicennia marina HOM05D004518 ORTHO05D005434 7.2e-34 148.7 90 77.8
TPR.G27640 Trifolium pratense HOM05D004518 ORTHO05D005434 1.6e-30 137.5 100 69.0
Cre08.g386050 Chlamydomonas reinhardtii HOM05D004518 ORTHO05D005434 1.0e-27 128.3 312 30.4
SEGI_26369 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 8.5e-27 125.2 82 67.1
TAR369G0459 Trochodendron aralioides HOM05D004518 ORTHO05D005434 4.1e-21 106.3 103 57.3
Psat3g079760 Pisum sativum HOM05D004518 ORTHO05D005434 4.5e-20 102.8 79 63.3
BolC4t21949H Brassica oleracea HOM05D004518 ORTHO05D005434 6.5e-19 99.0 229 38.0
Dinv05308 Davidia involucrata HOM05D004518 ORTHO05D005434 6.1e-17 92.4 60 66.7
C04p03070 Brassica napus HOM05D004518 ORTHO05D005434 7.9e-17 92.0 253 34.4
MCO13G544 Micromonas commoda HOM05D004518 ORTHO05D005434 2.3e-16 90.5 339 26.5
PGSC0003DMG400012448 Solanum tuberosum HOM05D004518 ORTHO05D005434 4.4e-15 86.3 42 92.9
PGSC0003DMG400010553 Solanum tuberosum HOM05D004518 ORTHO05D005434 8.2e-14 82.0 40 92.5
FAN02G0789 Fragaria x ananassa HOM05D004518 ORTHO05D011253 3.1e-13 80.1 55 67.3
MBI19_g45264_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 5.0e-11 72.8 142 39.4
PGSC0003DMG400013156 Solanum tuberosum HOM05D000197 ORTHO05D000114 5.2e-08 62.8 34 82.4
SEGI_18914 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 4.8e-06 56.2 103 37.9


User provided reference genes

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