Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g080670.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 7.6e-125 450.7 253 100.0
Sopen10g031210 Solanum pennellii HOM05D003715 ORTHO05D003958 3.5e-122 441.8 253 98.0
PGSC0003DMG400023700 Solanum tuberosum HOM05D003715 ORTHO05D003958 2.5e-104 382.5 253 87.0
Nitab4.5_0009367g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 2.4e-70 269.6 270 67.4
Nitab4.5_0001079g0120 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.4e-65 253.8 259 61.8
Peaxi162Scf00249g00717 Petunia axillaris HOM05D003715 ORTHO05D003958 9.8e-48 194.5 265 51.3
Nitab4.5_0002769g0040 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.7e-36 157.1 262 45.0
PGSC0003DMG400008354 Solanum tuberosum HOM05D003715 ORTHO05D003958 3.3e-35 152.9 257 44.7
Nitab4.5_0000658g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 4.3e-35 152.5 292 43.2
Peaxi162Scf00463g00019 Petunia axillaris HOM05D003715 ORTHO05D003958 2.1e-34 150.2 290 43.1
Solyc10g078590.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 2.8e-34 149.8 258 44.2
Sopen10g029220 Solanum pennellii HOM05D003715 ORTHO05D003958 4.7e-34 149.1 258 43.8
Peaxi162Scf00003g04827 Petunia axillaris HOM05D003715 ORTHO05D003958 5.8e-32 142.1 263 43.7
Manes.09G140500 Manihot esculenta HOM05D003715 ORTHO05D003958 2.9e-31 139.8 275 41.5
Manes.08G145000 Manihot esculenta HOM05D003715 ORTHO05D003958 1.6e-29 134.0 277 39.0
Actinidia22080 Actinidia chinensis HOM05D003715 ORTHO05D003958 6.0e-29 132.1 301 40.5
Nitab4.5_0000358g0150 Nicotiana tabacum HOM05D003715 ORTHO05D003958 2.3e-28 130.2 255 43.9
Potri.019G035600 Populus trichocarpa HOM05D003715 ORTHO05D003958 2.3e-28 130.2 298 40.9
vmacro12564 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 1.5e-27 127.5 279 41.2
PSO339G5928 Papaver somniferum HOM05D003715 ORTHO05D003958 3.3e-27 126.3 280 37.9
Oeu024502.1 Olea europaea HOM05D003715 ORTHO05D003958 1.6e-26 124.0 277 37.9
Dinv37021 Davidia involucrata HOM05D003715 ORTHO05D003958 2.1e-26 123.6 277 36.5
Sabra19G0044200 Salix brachista HOM05D003715 ORTHO05D003958 2.8e-26 123.2 296 39.2
Sabra19G0047500 Salix brachista HOM05D003715 ORTHO05D003958 2.8e-26 123.2 296 39.2
VMungo0464G1653 Vigna mungo HOM05D003715 ORTHO05D003958 2.8e-26 123.2 275 36.4
Ca_04486_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 3.6e-26 122.9 245 41.2
Sc13g0002630 Simmondsia chinensis HOM05D003715 ORTHO05D003958 4.7e-26 122.5 281 34.5
Cfa001533 Carpinus fangiana HOM05D003715 ORTHO05D003958 6.2e-26 122.1 296 39.2
Phvul.004G080700 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 6.2e-26 122.1 274 36.9
Nitab4.5_0000394g0140 Nicotiana tabacum HOM05D003715 ORTHO05D003958 8.1e-26 121.7 281 39.9
EL10Ac3g06828 Beta vulgaris HOM05D003715 ORTHO05D003958 1.1e-25 121.3 262 36.3
Psat1g091040 Pisum sativum HOM05D003715 ORTHO05D003958 1.1e-25 121.3 235 38.7
Eucgr.A02102 Eucalyptus grandis HOM05D003715 ORTHO05D003958 1.4e-25 120.9 291 35.7
Actinidia30549 Actinidia chinensis HOM05D003715 ORTHO05D003958 1.8e-25 120.6 241 43.6
Hma1.2p1_0152F.1_g067600 Hydrangea macrophylla HOM05D003715 ORTHO05D003958 1.8e-25 120.6 277 34.3
QL07p018445 Quercus lobata HOM05D003715 ORTHO05D003958 3.1e-25 119.8 296 34.1
MSTRG.26069 Avicennia marina HOM05D003715 ORTHO05D003958 4.0e-25 119.4 270 35.6
Medtr6g029250 Medicago truncatula HOM05D003715 ORTHO05D003958 4.0e-25 119.4 235 37.9
MELO3C008806.2 Cucumis melo HOM05D003715 ORTHO05D003958 8.9e-25 118.2 293 36.9
Oeu035703.1 Olea europaea HOM05D003715 ORTHO05D003958 8.9e-25 118.2 277 36.1
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 8.9e-25 118.2 299 37.8
CiPaw.10G001300 Carya illinoinensis HOM05D003715 ORTHO05D003958 1.2e-24 117.9 241 39.8
Potri.013G057200 Populus trichocarpa HOM05D003715 ORTHO05D003958 1.5e-24 117.5 297 38.4
PSO384G3755 Papaver somniferum HOM05D003715 ORTHO05D003958 5.8e-24 115.5 280 36.4
Hund19231 Selenicereus undatus HOM05D003715 ORTHO05D003958 7.5e-24 115.2 260 36.5
ClCG04G005350 Citrullus lanatus HOM05D003715 ORTHO05D003958 1.3e-23 114.4 288 34.0
Lalb_Chr02g0157161 Lupinus albus HOM05D003715 ORTHO05D003958 1.7e-23 114.0 250 39.6
Ca_08274_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 2.2e-23 113.6 258 38.4
Haze_19430 Corylus avellana HOM05D003715 ORTHO05D003958 2.2e-23 113.6 297 37.4
CsaV3_4G013240 Cucumis sativus L. HOM05D003715 ORTHO05D003958 2.2e-23 113.6 293 36.5
Sed0021221 Sechium edule HOM05D003715 ORTHO05D003958 2.9e-23 113.2 272 36.4
Dinv14575 Davidia involucrata HOM05D003715 ORTHO05D003958 3.7e-23 112.8 280 35.4
Glyma.02G072500 Glycine max HOM05D003715 ORTHO05D003958 3.7e-23 112.8 274 35.8
TPR.G9142 Trifolium pratense HOM05D003715 ORTHO05D003958 3.7e-23 112.8 243 37.4
TWI34G1349 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 6.4e-23 112.1 294 35.7
Glyma.16G153700 Glycine max HOM05D003715 ORTHO05D003958 8.3e-23 111.7 273 36.3
Psat3g088760 Pisum sativum HOM05D003715 ORTHO05D003958 1.1e-22 111.3 256 34.8
Thecc.05G249800 Theobroma cacao HOM05D003715 ORTHO05D003958 1.1e-22 111.3 285 36.5
Sabra13G0051000 Salix brachista HOM05D003715 ORTHO05D003958 1.4e-22 110.9 296 38.5
Aqoxy2G00514 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 1.9e-22 110.5 265 38.5
Carub.0003s0306 Capsella rubella HOM05D003715 ORTHO05D003958 3.2e-22 109.8 258 36.4
TWI32G0411 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 3.2e-22 109.8 287 35.9
DCAR_019875 Daucus carota HOM05D003715 ORTHO05D003958 4.1e-22 109.4 276 35.1
Sed0002226 Sechium edule HOM05D003715 ORTHO05D003958 9.2e-22 108.2 297 34.0
Lalb_Chr22g0359081 Lupinus albus HOM05D003715 ORTHO05D003958 1.6e-21 107.5 276 36.2
PGR042G0616 Punica granatum HOM05D003715 ORTHO05D003958 3.5e-21 106.3 267 35.6
Duzib106G1922 Durio zibethinus HOM05D003715 ORTHO05D003958 6.0e-21 105.5 286 35.3
Gorai.007G262000 Gossypium raimondii HOM05D003715 ORTHO05D003958 7.8e-21 105.1 282 35.5
Atru.chr2.1400 Acer truncatum HOM05D003715 ORTHO05D003958 1.7e-20 104.0 291 33.3
COL.COLO4_36085 Corchorus olitorius HOM05D003715 ORTHO05D003958 1.7e-20 104.0 273 38.8
Medtr7g085790 Medicago truncatula HOM05D003715 ORTHO05D003958 2.3e-20 103.6 256 35.9
Ciclev10021362m.g Citrus clementina HOM05D003715 ORTHO05D003958 3.0e-20 103.2 244 41.4
PSO781G0019 Papaver somniferum HOM05D003715 ORTHO05D003958 5.1e-20 102.4 257 34.2
MBI01_g25640_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.1e-19 101.3 308 31.8
TPR.G5870 Trifolium pratense HOM05D003715 ORTHO05D003958 1.9e-19 100.5 265 35.5
TAR369G0375 Trochodendron aralioides HOM05D003715 ORTHO05D003958 1.9e-19 100.5 239 37.7
Lj1g0002462 Lotus japonicus HOM05D003715 ORTHO05D003958 7.3e-19 98.6 184 38.6
Gohir.A11G235300 Gossypium hirsutum HOM05D003715 ORTHO05D003958 1.2e-18 97.8 281 33.5
MBI04_g28023_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.2e-18 97.8 273 34.4
MD12G1005100 Malus domestica HOM05D003715 ORTHO05D003958 2.1e-18 97.1 286 34.3
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 2.8e-18 96.7 195 39.0
Thhalv10021350m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 2.8e-18 96.7 262 37.0
SGA_v2.0_scaffold94G28404 Striga asiatica HOM05D003715 ORTHO05D003958 1.1e-17 94.7 250 36.0
AL3G13760 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 1.4e-17 94.4 259 35.5
MBI04_g47731_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.4e-17 94.4 179 39.7
PGR142G1981 Punica granatum HOM05D003715 ORTHO05D003958 1.4e-17 94.4 283 31.8
Gohir.D11G246200 Gossypium hirsutum HOM05D003715 ORTHO05D003958 3.1e-17 93.2 282 34.4
BraA05t23092Z Brassica rapa HOM05D003715 ORTHO05D003958 6.8e-17 92.0 251 36.3
Cpa.g.sc51.130 Carica papaya HOM05D003715 ORTHO05D003958 1.2e-16 91.3 290 31.7
MD14G1003600 Malus domestica HOM05D003715 ORTHO05D003958 1.2e-16 91.3 294 32.3
Sp3g02840 Schrenkiella parvula HOM05D003715 ORTHO05D003958 1.2e-16 91.3 257 35.8
Nn7g35866 Nelumbo nucifera HOM05D003715 ORTHO05D003958 1.5e-16 90.9 249 35.3
AT3G03870 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 4.4e-16 89.4 265 35.5
CiPaw.09G002400 Carya illinoinensis HOM05D003715 ORTHO05D003958 4.4e-16 89.4 235 36.6
HanXRQChr13g0397871 Helianthus annuus HOM05D003715 ORTHO05D003958 4.4e-16 89.4 253 33.2
RcHm_v2.0_Chr3g0497011 Rosa chinensis HOM05D003715 ORTHO05D003958 4.4e-16 89.4 303 31.0
THA.LOC104820776 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 4.4e-16 89.4 291 32.6
BcaC05g30247 Brassica carinata HOM05D003715 ORTHO05D003958 7.6e-16 88.6 253 34.4
BcaNung05741 Brassica carinata HOM05D003715 ORTHO05D003958 7.6e-16 88.6 256 35.5
Prupe.7G006100 Prunus persica HOM05D003715 ORTHO05D003958 9.9e-16 88.2 301 28.9
vmacro09135 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 9.9e-16 88.2 209 37.3
Lj1g0012553 Lotus japonicus HOM05D003715 ORTHO05D003958 1.7e-15 87.4 275 29.8
A05p43520 Brassica napus HOM05D003715 ORTHO05D003958 2.2e-15 87.0 253 36.0
Lalb_Chr14g0364551 Lupinus albus HOM05D003715 ORTHO05D003958 2.2e-15 87.0 243 32.9
Cc06_g23060 Coffea canephora HOM05D003715 ORTHO05D003958 6.4e-15 85.5 160 45.0
Rhsim04G0091400 Rhododendron simsii HOM05D006013 ORTHO05D007383 1.1e-14 84.7 214 38.8
BcaC05g29901 Brassica carinata HOM05D003715 ORTHO05D003958 1.4e-14 84.3 253 35.2
BolC5t34973H Brassica oleracea HOM05D003715 ORTHO05D003958 1.4e-14 84.3 253 35.2
CANSAT78G1806 Cannabis sativa HOM05D003715 ORTHO05D003958 1.4e-14 84.3 295 31.2
Nn2g12054 Nelumbo nucifera HOM05D003715 ORTHO05D003958 1.4e-14 84.3 267 33.0
CARHR077990 Cardamine hirsuta HOM05D003715 ORTHO05D003958 1.9e-14 84.0 251 35.1
CDE02G4343 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 3.2e-14 83.2 267 30.7
SalBow1G3164 Salvia bowleyana HOM05D003715 ORTHO05D003958 3.2e-14 83.2 234 32.9
ECA238G2879 Erigeron canadensis HOM05D003715 ORTHO05D003958 4.1e-14 82.8 273 33.0
TAR633G2492 Trochodendron aralioides HOM05D003715 ORTHO05D003958 4.1e-14 82.8 285 31.2
AL6G29330 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 9.2e-14 81.6 279 31.9
HanXRQChr14g0438161 Helianthus annuus HOM05D003715 ORTHO05D003958 1.2e-13 81.3 273 32.6
Carub.0006s1642 Capsella rubella HOM05D003715 ORTHO05D003958 1.6e-13 80.9 270 33.0
arahy.Tifrunner.gnm1.ann1.V3MY1S Arachis hypogaea HOM05D003715 ORTHO05D003958 2.1e-13 80.5 258 32.6
AT5G18130 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 2.7e-13 80.1 163 39.3
Sp6g26180 Schrenkiella parvula HOM05D003715 ORTHO05D003958 2.7e-13 80.1 277 33.2
A02p04750 Brassica napus HOM05D003715 ORTHO05D003958 3.5e-13 79.7 267 31.1
CDE05G3048 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 3.5e-13 79.7 265 30.9
Duzib128G0041 Durio zibethinus HOM05D003715 ORTHO05D003958 4.6e-13 79.3 263 33.5
Ah.04g153150 Amaranthus hybridus HOM05D003715 ORTHO05D003958 6.0e-13 79.0 254 32.7
Aqoxy1G00472 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 7.8e-13 78.6 253 30.0
Thhalv10014292m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 7.8e-13 78.6 283 32.2
A10p21370 Brassica napus HOM05D003715 ORTHO05D003958 1.0e-12 78.2 270 31.5
BcaB01g06399 Brassica carinata HOM05D003715 ORTHO05D003958 5.1e-12 75.9 256 32.0
A03p08670 Brassica napus HOM05D003715 ORTHO05D003958 5.1e-12 75.9 260 30.4
Lsat_1_v5_gn_6_37461 Lactuca sativa HOM05D003715 ORTHO05D003958 5.1e-12 75.9 179 33.0
ECA233G0839 Erigeron canadensis HOM05D003715 ORTHO05D003958 6.6e-12 75.5 261 33.0
Duzib106G0556 Durio zibethinus HOM05D003715 ORTHO05D003958 8.7e-12 75.1 223 35.0
C02p09710 Brassica napus HOM05D003715 ORTHO05D003958 1.1e-11 74.7 268 30.2
AUR62032043 Chenopodium quinoa HOM05D003715 ORTHO05D003958 1.5e-11 74.3 259 31.3
BolC2t06880H Brassica oleracea HOM05D003715 ORTHO05D003958 1.9e-11 73.9 268 29.9
BraA02t05434Z Brassica rapa HOM05D003715 ORTHO05D003958 1.9e-11 73.9 265 30.2
BolC3t13497H Brassica oleracea HOM05D003715 ORTHO05D003958 3.3e-11 73.2 255 31.8
BcaB05g23302 Brassica carinata HOM05D003715 ORTHO05D003958 4.3e-11 72.8 270 30.7
BcaB08g36703 Brassica carinata HOM05D003715 ORTHO05D003958 4.3e-11 72.8 249 32.5
BolC1t05801H Brassica oleracea HOM05D003715 ORTHO05D003958 4.3e-11 72.8 256 32.0
HanXRQChr02g0054571 Helianthus annuus HOM05D003715 ORTHO05D003958 4.3e-11 72.8 265 29.4
PSO384G3057 Papaver somniferum HOM05D003715 ORTHO05D003958 4.3e-11 72.8 118 44.1
BcaB01g05177 Brassica carinata HOM05D003715 ORTHO05D003958 5.6e-11 72.4 255 31.8
C03p10110 Brassica napus HOM05D003715 ORTHO05D003958 5.6e-11 72.4 255 31.8
BraA03t10190Z Brassica rapa HOM05D003715 ORTHO05D003958 5.6e-11 72.4 255 31.8
Actinidia38611 Actinidia chinensis HOM05D003715 ORTHO05D003958 7.3e-11 72.0 245 33.1
CARHR194940 Cardamine hirsuta HOM05D003715 ORTHO05D003958 9.6e-11 71.6 157 37.6
Glyma.16G040300 Glycine max HOM05D003715 ORTHO05D003958 9.6e-11 71.6 261 29.1
BraA10t44200Z Brassica rapa HOM05D003715 ORTHO05D003958 1.2e-10 71.2 225 32.4
CSS0027479 Camellia sinensis var. sinensis HOM05D003715 ORTHO05D003958 3.6e-10 69.7 236 30.5
FAN23G0877 Fragaria x ananassa HOM05D003715 ORTHO05D003958 4.7e-10 69.3 293 31.1
FAN26G1768 Fragaria x ananassa HOM05D003715 ORTHO05D003958 4.7e-10 69.3 291 30.2
C09p58840 Brassica napus HOM05D003715 ORTHO05D003958 6.2e-10 68.9 272 31.2
ATR0737G080 Amborella trichopoda HOM05D003715 ORTHO05D003958 8.1e-10 68.6 172 34.9
BcaC03g13579 Brassica carinata HOM05D003715 ORTHO05D003958 1.1e-09 68.2 268 28.7
Glyma.19G112800 Glycine max HOM05D003715 ORTHO05D003958 1.4e-09 67.8 277 29.2
THA.LOC104802870 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 2.4e-09 67.0 272 32.0
BolC9t58728H Brassica oleracea HOM05D003715 ORTHO05D003958 3.1e-09 66.6 210 33.8
FvH4_1g28230 Fragaria vesca HOM05D003715 ORTHO05D003958 4.0e-09 66.2 217 33.2
Aa31LG5G14450 Aethionema arabicum HOM05D003715 ORTHO05D003958 5.2e-09 65.9 249 32.9
FAN28G3019 Fragaria x ananassa HOM05D003715 ORTHO05D003958 5.2e-09 65.9 294 29.9
THA.LOC104827275 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 5.2e-09 65.9 244 32.8
MBI04_g37012_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 9.0e-09 65.1 172 33.7
Phvul.001G111500 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 1.5e-08 64.3 181 34.3
AUR62032710 Chenopodium quinoa HOM05D003715 ORTHO05D003958 2.2e-07 60.5 259 30.1
PSO782G0808 Papaver somniferum HOM05D003715 ORTHO05D003958 4.9e-07 59.3 113 40.7
Eucgr.K01502 Eucalyptus grandis HOM05D003715 ORTHO05D003958 8.4e-07 58.5 261 29.5
VMungo1383G2890 Vigna mungo HOM05D003715 ORTHO05D003958 1.4e-06 57.8 194 26.3
arahy.Tifrunner.gnm1.ann1.KTU7AY Arachis hypogaea HOM05D003715 ORTHO05D003958 1.9e-06 57.4 238 31.5


User provided reference genes

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