Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g080520.3 Solanum lycopersicum HOM05D005841 ORTHO05D007132 2.4e-192 675.6 411 100.0
Sopen10g031070 Solanum pennellii HOM05D005841 ORTHO05D007132 2.7e-164 582.4 415 88.4
PGSC0003DMG400023670 Solanum tuberosum HOM05D005841 ORTHO05D007132 2.3e-163 579.3 395 90.9
Nitab4.5_0004458g0010 Nicotiana tabacum HOM05D005841 ORTHO05D007132 1.1e-144 517.3 375 84.3
Nitab4.5_0000324g0020 Nicotiana tabacum HOM05D005841 ORTHO05D007132 1.4e-144 516.9 375 84.5
Peaxi162Scf00258g00731 Petunia axillaris HOM05D005841 ORTHO05D007132 1.5e-143 513.5 376 80.9
CSS0015441 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 1.8e-131 473.4 395 64.3
Rhsim03G0005600 Rhododendron simsii HOM05D005841 ORTHO05D007132 2.3e-131 473.0 399 65.4
Actinidia22040 Actinidia chinensis HOM05D005841 ORTHO05D007132 3.0e-131 472.6 378 66.7
Dinv24065 Davidia involucrata HOM05D005841 ORTHO05D007132 6.7e-131 471.5 379 66.2
vmacro07900 Vaccinium macrocarpon HOM05D005841 ORTHO05D007132 2.6e-130 469.5 378 65.9
Dinv14310 Davidia involucrata HOM05D005841 ORTHO05D007132 5.3e-128 461.8 398 64.1
Atru.chr12.1096 Acer truncatum HOM05D005841 ORTHO05D007132 5.9e-127 458.4 396 61.6
QL04p022932 Quercus lobata HOM05D005841 ORTHO05D007132 2.9e-126 456.1 376 74.2
Lju124A25T34 Lonicera japonica HOM05D005841 ORTHO05D007132 5.0e-126 455.3 407 62.7
CiPaw.14G011500 Carya illinoinensis HOM05D005841 ORTHO05D007132 6.5e-126 454.9 412 74.0
Lsat_1_v5_gn_5_163601 Lactuca sativa HOM05D005841 ORTHO05D007132 1.1e-125 454.1 305 76.1
ECA248G0891 Erigeron canadensis HOM05D005841 ORTHO05D007132 3.2e-125 452.6 301 76.4
Cc06_g15810 Coffea canephora HOM05D005841 ORTHO05D007132 4.2e-125 452.2 296 76.0
Oeu007758.1 Olea europaea HOM05D005841 ORTHO05D007132 8.0e-124 448.0 375 62.9
MSTRG.19910 Avicennia marina HOM05D005841 ORTHO05D007132 1.4e-123 447.2 298 76.5
DCAR_019783 Daucus carota HOM05D005841 ORTHO05D007132 2.3e-123 446.4 376 62.5
Glyma.04G125600 Glycine max HOM05D005841 ORTHO05D007132 4.0e-123 445.7 371 63.6
Phvul.005G012800 Phaseolus vulgaris HOM05D005841 ORTHO05D007132 5.2e-123 445.3 371 62.8
HanXRQChr13g0390471 Helianthus annuus HOM05D005841 ORTHO05D007132 6.8e-123 444.9 374 63.4
Ciclev10001427m.g Citrus clementina HOM05D005841 ORTHO05D007132 3.4e-122 442.6 300 73.7
Gohir.A06G171000 Gossypium hirsutum HOM05D005841 ORTHO05D007132 3.4e-122 442.6 380 62.1
Gohir.D06G178900 Gossypium hirsutum HOM05D005841 ORTHO05D007132 4.4e-122 442.2 381 61.7
VMungo1080G1721 Vigna mungo HOM05D005841 ORTHO05D007132 1.3e-121 440.7 371 62.5
Glyma.06G313000 Glycine max HOM05D005841 ORTHO05D007132 2.8e-121 439.5 371 62.8
Gorai.010G208800 Gossypium raimondii HOM05D005841 ORTHO05D007132 2.8e-121 439.5 381 61.4
THA.LOC104809184 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 2.8e-121 439.5 376 62.5
MSTRG.26082 Avicennia marina HOM05D005841 ORTHO05D007132 8.3e-121 438.0 300 73.3
Manes.04G153300 Manihot esculenta HOM05D005841 ORTHO05D007132 3.1e-120 436.0 378 64.0
Thecc.10G128400 Theobroma cacao HOM05D005841 ORTHO05D007132 5.4e-120 435.3 381 60.4
Lalb_Chr18g0048171 Lupinus albus HOM05D005841 ORTHO05D007132 4.5e-119 432.2 375 61.9
COL.COLO4_09288 Corchorus olitorius HOM05D005841 ORTHO05D007132 5.9e-119 431.8 378 61.4
PSO339G0077 Papaver somniferum HOM05D005841 ORTHO05D007132 5.9e-119 431.8 375 61.3
Lj3g0005753 Lotus japonicus HOM05D005841 ORTHO05D007132 7.7e-119 431.4 371 61.5
Duzib128G0994 Durio zibethinus HOM05D005841 ORTHO05D007132 1.7e-118 430.3 370 62.2
PSO384G2928 Papaver somniferum HOM05D005841 ORTHO05D007132 2.2e-118 429.9 375 61.3
Potri.003G189400 Populus trichocarpa HOM05D005841 ORTHO05D007132 6.5e-118 428.3 381 60.1
TWI38G1535 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 8.5e-118 427.9 303 71.0
Medtr3g011510 Medicago truncatula HOM05D005841 ORTHO05D007132 2.5e-117 426.4 387 59.4
Sabra01G0025200 Salix brachista HOM05D005841 ORTHO05D007132 3.2e-117 426.0 381 59.6
BcaB02g07739 Brassica carinata HOM05D005841 ORTHO05D007132 7.2e-117 424.9 384 59.6
THA.LOC104824200 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 7.2e-117 424.9 373 61.9
Sc20g0000960 Simmondsia chinensis HOM05D005841 ORTHO05D007132 9.4e-117 424.5 373 59.8
Sp5g08040 Schrenkiella parvula HOM05D005841 ORTHO05D007132 1.2e-116 424.1 373 61.9
TWI15G0221 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 1.6e-116 423.7 297 71.0
Aa31sc488G20 Aethionema arabicum HOM05D005841 ORTHO05D007132 6.1e-116 421.8 376 61.4
CARHR164270 Cardamine hirsuta HOM05D005841 ORTHO05D007132 6.1e-116 421.8 299 72.6
Eucgr.G03178 Eucalyptus grandis HOM05D005841 ORTHO05D007132 6.1e-116 421.8 402 60.9
Potri.001G036400 Populus trichocarpa HOM05D005841 ORTHO05D007132 1.4e-115 420.6 381 58.8
Haze_02951 Corylus avellana HOM05D005841 ORTHO05D007132 2.3e-115 419.9 463 51.2
Thhalv10010421m.g Eutrema salsugineum HOM05D005841 ORTHO05D007132 6.8e-115 418.3 301 71.4
A09p47340 Brassica napus HOM05D005841 ORTHO05D007132 1.2e-114 417.5 380 58.9
BolC8t50563H Brassica oleracea HOM05D005841 ORTHO05D007132 1.2e-114 417.5 381 58.8
Sed0011967 Sechium edule HOM05D005841 ORTHO05D007132 1.2e-114 417.5 297 71.0
CANSAT56G0667 Cannabis sativa HOM05D005841 ORTHO05D007132 2.0e-114 416.8 308 66.6
Sabra03G0139600 Salix brachista HOM05D005841 ORTHO05D007132 2.6e-114 416.4 368 60.3
arahy.Tifrunner.gnm1.ann1.AX9XXP Arachis hypogaea HOM05D005841 ORTHO05D007132 4.4e-114 415.6 309 68.9
C08p29570 Brassica napus HOM05D005841 ORTHO05D007132 4.4e-114 415.6 381 58.8
AL5G35420 Arabidopsis lyrata HOM05D005841 ORTHO05D007132 5.7e-114 415.2 377 60.5
BraA09t40195Z Brassica rapa HOM05D005841 ORTHO05D007132 5.7e-114 415.2 381 58.8
unitig_699.g19444 Utricularia gibba HOM05D005841 ORTHO05D007132 7.5e-114 414.8 300 68.7
Carub.0005s2096 Capsella rubella HOM05D005841 ORTHO05D007132 1.3e-113 414.1 377 59.7
AT3G54360 Arabidopsis thaliana HOM05D005841 ORTHO05D007132 3.7e-113 412.5 375 60.0
Ca_26913_v3 Cicer arietinum L. HOM05D005841 ORTHO05D007132 3.7e-113 412.5 359 60.7
BcaB01g00199 Brassica carinata HOM05D005841 ORTHO05D007132 4.9e-113 412.1 386 58.0
CsaV3_5G029280 Cucumis sativus L. HOM05D005841 ORTHO05D007132 1.4e-112 410.6 301 68.4
MBI19_g24060_MAGBIO Magnolia biondii HOM05D005841 ORTHO05D007132 2.4e-112 409.8 300 70.3
A07p22080 Brassica napus HOM05D005841 ORTHO05D007132 3.1e-112 409.5 301 69.4
BraA07t29891Z Brassica rapa HOM05D005841 ORTHO05D007132 3.1e-112 409.5 301 69.4
MELO3C011778.2 Cucumis melo HOM05D005841 ORTHO05D007132 3.1e-112 409.5 301 68.4
Aqoxy3G04362 Aquilegia oxysepala HOM05D005841 ORTHO05D007132 2.7e-111 406.4 297 69.7
GSVIVG01027370001 Vitis vinifera HOM05D005841 ORTHO05D007132 5.9e-111 405.2 382 57.3
Hund07799 Selenicereus undatus HOM05D005841 ORTHO05D007132 1.7e-110 403.7 416 55.8
Sed0002293 Sechium edule HOM05D005841 ORTHO05D007132 2.3e-110 403.3 301 67.8
Nn2g15922 Nelumbo nucifera HOM05D005841 ORTHO05D007132 5.6e-109 398.7 285 71.2
Zm00001eb126920 Zea mays HOM05D005841 ORTHO05D007132 1.2e-108 397.5 295 68.1
CDE02G3427 Ceratophyllum demersum HOM05D005841 ORTHO05D007132 2.8e-108 396.4 299 65.6
Ah.07g203740 Amaranthus hybridus HOM05D005841 ORTHO05D007132 9.8e-106 387.9 364 56.3
arahy.Tifrunner.gnm1.ann1.87YK44 Arachis hypogaea HOM05D005841 ORTHO05D007132 1.3e-105 387.5 314 65.6
EL10Ac9g20941 Beta vulgaris HOM05D005841 ORTHO05D007132 1.4e-104 384.0 362 55.5
SGA_v2.0_scaffold69G23059 Striga asiatica HOM05D005841 ORTHO05D007132 1.8e-104 383.6 298 66.4
C06p22120 Brassica napus HOM05D005841 ORTHO05D007132 1.2e-103 380.9 293 67.2
BolC6t37399H Brassica oleracea HOM05D005841 ORTHO05D007132 1.2e-103 380.9 293 67.2
SEGI_15550 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 2.0e-103 380.2 305 63.6
Os01g0104100 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 5.9e-103 378.6 297 66.3
AUR62041651 Chenopodium quinoa HOM05D005841 ORTHO05D007132 1.0e-102 377.9 379 53.8
Prupe.2G051700 Prunus persica HOM05D005841 ORTHO05D007132 2.9e-102 376.3 387 54.3
MD07G1085200 Malus domestica HOM05D005841 ORTHO05D007132 1.1e-101 374.4 389 53.5
ClCG11G012870 Citrullus lanatus HOM05D005841 ORTHO05D007132 1.2e-100 370.9 300 64.7
TPR.G5121 Trifolium pratense HOM05D005841 ORTHO05D007132 1.4e-99 367.5 388 55.7
Psat5g225080 Pisum sativum HOM05D005841 ORTHO05D007132 2.3e-99 366.7 342 58.2
AUR62035532 Chenopodium quinoa HOM05D005841 ORTHO05D007132 5.2e-99 365.5 379 53.3
Migut.J01841 Erythranthe guttata HOM05D005841 ORTHO05D007132 5.8e-98 362.1 295 64.1
FvH4_7g04620 Fragaria vesca HOM05D005841 ORTHO05D007132 3.7e-97 359.4 293 64.2
RcHm_v2.0_Chr1g0330051 Rosa chinensis HOM05D005841 ORTHO05D007132 8.3e-97 358.2 377 53.1
BcaC08g44679 Brassica carinata HOM05D005841 ORTHO05D007132 1.4e-96 357.5 385 53.0
FAN06G4202 Fragaria x ananassa HOM05D005841 ORTHO05D007132 2.5e-93 346.7 281 64.4
FAN03G2595 Fragaria x ananassa HOM05D005841 ORTHO05D007132 3.3e-93 346.3 281 64.1
FAN06G1077 Fragaria x ananassa HOM05D005841 ORTHO05D007132 3.3e-93 346.3 281 64.1
FAN10G3225 Fragaria x ananassa HOM05D005841 ORTHO05D007132 5.6e-93 345.5 281 64.1
FAN01G0675 Fragaria x ananassa HOM05D005841 ORTHO05D007132 3.6e-92 342.8 281 63.7
Mapoly0042s0033 Marchantia polymorpha HOM05D005841 ORTHO05D007132 8.9e-91 338.2 304 57.2
Pp3c4_17260 Physcomitrium patens HOM05D005841 ORTHO05D007132 9.8e-90 334.7 299 57.5
Os02g0795300 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 2.9e-89 333.2 296 59.5
Gorai.011G224300 Gossypium raimondii HOM05D005841 ORTHO05D007132 3.5e-87 326.2 271 62.4
AagrBONN_evm.TU.Sc2ySwM_344.2135 Anthoceros agrestis HOM05D005841 ORTHO05D007132 4.0e-83 312.8 328 50.9
SMO194G0025 Selaginella moellendorffii HOM05D005841 ORTHO05D007132 1.5e-77 294.3 297 51.2
CSS0023245 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 1.5e-74 284.3 250 61.2
AUR62039567 Chenopodium quinoa HOM05D005841 ORTHO05D007132 4.4e-74 282.7 274 55.5
Ah.15g098060 Amaranthus hybridus HOM05D005841 ORTHO05D007132 1.3e-57 228.0 272 48.2
ATR0068G039 Amborella trichopoda HOM05D005841 ORTHO05D007132 1.7e-57 227.6 229 52.4
HPP92_001714 Vanilla planifolia HOM05D005841 ORTHO05D007132 1.3e-52 211.5 254 46.9
AUR62041645 Chenopodium quinoa HOM05D005841 ORTHO05D007132 3.7e-52 209.9 250 48.0
Gohir.D10G200101 Gossypium hirsutum HOM05D005841 ORTHO05D007132 9.0e-51 205.3 150 66.7
Cpa.g.sc33.143 Carica papaya HOM05D005841 ORTHO05D007132 1.7e-49 201.1 153 68.0
CBR_g19049 Chara braunii HOM05D005841 ORTHO05D007132 1.2e-47 194.9 361 34.1
Hma1.2p1_3953F.1_g338070 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 7.9e-47 192.2 144 68.8
FAN03G2434 Fragaria x ananassa HOM05D005841 ORTHO05D007132 5.3e-43 179.5 129 69.8
TAR629G2175 Trochodendron aralioides HOM05D005841 ORTHO05D007132 8.4e-41 172.2 124 71.0
Gohir.D10G200050 Gossypium hirsutum HOM05D005841 ORTHO05D007132 5.7e-37 159.5 116 69.0
SEGI_12352 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 4.1e-35 153.3 111 64.9
Hma1.2p1_3953F.1_g338060 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 2.4e-27 127.5 79 79.7
Lsat_1_v5_gn_1_17940 Lactuca sativa HOM05D005841 ORTHO05D007132 1.0e-22 112.1 74 75.7
SEGI_26376 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 2.4e-19 100.9 146 43.2
ATR0068G030 Amborella trichopoda HOM05D005841 ORTHO05D007132 4.4e-13 80.1 66 62.1
Cre03.g172600 Chlamydomonas reinhardtii HOM05D005841 ORTHO05D007132 9.1e-11 72.4 404 20.5
Psat0s5799g0040 Pisum sativum HOM05D005841 ORTHO05D007132 1.9e-08 64.7 55 58.2
TPR.G5122 Trifolium pratense HOM05D003377 ORTHO05D004080 1.2e-07 62.0 49 63.3
Psat7g004640 Pisum sativum HOM05D000860 ORTHO05D005731 4.7e-07 60.1 54 57.4


User provided reference genes

Program Settings