Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 3.9e-137 491.5 256 100.0
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 6.9e-134 480.7 256 98.0
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 5.0e-132 474.6 256 96.5
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 2.2e-103 379.4 257 80.9
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 4.1e-94 348.6 256 73.8
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 2.5e-91 339.3 256 72.3
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 8.6e-84 314.3 262 68.3
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 4.9e-79 298.5 262 66.8
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 1.5e-72 276.9 264 61.7
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 1.1e-65 254.2 262 62.2
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 4.4e-64 248.8 283 56.9
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 2.2e-63 246.5 261 59.8
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.9e-62 243.4 269 56.5
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.9e-59 233.4 272 55.5
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 2.8e-58 229.6 268 54.9
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 5.2e-57 225.3 259 55.2
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 8.4e-55 218.0 265 54.7
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 3.2e-54 216.1 264 51.9
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 4.2e-54 215.7 267 52.8
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 1.2e-53 214.2 266 51.5
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 1.2e-53 214.2 264 52.7
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 1.6e-53 213.8 266 54.9
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 1.6e-53 213.8 273 54.9
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 2.7e-53 213.0 267 53.6
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 1.3e-52 210.7 265 53.2
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 1.3e-52 210.7 293 50.2
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 1.7e-52 210.3 268 53.0
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 2.5e-51 206.5 282 51.4
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 9.6e-51 204.5 266 53.8
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 3.6e-50 202.6 268 49.6
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 1.4e-49 200.7 260 52.3
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.8e-49 200.3 176 63.6
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 1.8e-49 200.3 279 50.5
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 4.0e-49 199.1 271 50.9
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 6.9e-49 198.4 267 52.4
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 9.0e-49 198.0 268 49.6
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 5.8e-48 195.3 265 52.5
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 1.3e-47 194.1 269 52.4
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 3.8e-47 192.6 265 52.5
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 3.8e-47 192.6 249 53.8
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 3.8e-47 192.6 273 52.4
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 8.4e-47 191.4 268 51.5
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 1.1e-46 191.0 265 50.2
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 1.1e-46 191.0 261 51.0
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 1.4e-46 190.7 265 50.6
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 5.4e-46 188.7 268 48.9
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 7.1e-46 188.3 266 51.1
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 1.6e-45 187.2 266 50.0
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 3.5e-45 186.0 266 48.1
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 3.5e-45 186.0 263 49.4
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 4.6e-45 185.7 284 47.5
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 6.0e-45 185.3 241 52.7
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 1.0e-44 184.5 266 50.0
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 1.3e-44 184.1 207 56.0
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 1.3e-44 184.1 270 50.4
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 1.7e-44 183.7 313 45.7
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 2.3e-44 183.3 263 49.4
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 8.7e-44 181.4 248 50.8
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 1.1e-43 181.0 265 49.1
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 1.5e-43 180.6 266 48.5
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 1.9e-43 180.3 267 47.2
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 2.5e-43 179.9 268 47.8
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 4.3e-43 179.1 321 43.9
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 5.6e-43 178.7 267 46.8
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 9.6e-43 177.9 268 47.0
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 9.6e-43 177.9 267 50.2
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 2.1e-42 176.8 267 49.8
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 2.1e-42 176.8 263 47.9
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 1.4e-41 174.1 270 48.9
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 3.1e-41 172.9 260 47.3
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 3.1e-41 172.9 270 48.1
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 5.3e-41 172.2 266 49.6
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 1.5e-40 170.6 262 47.7
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 2.0e-40 170.2 269 45.0
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 2.0e-40 170.2 262 47.7
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 5.8e-40 168.7 253 47.8
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 2.2e-39 166.8 247 47.4
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 2.2e-39 166.8 266 45.5
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 3.8e-39 166.0 274 45.6
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 4.9e-39 165.6 274 45.6
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 1.6e-37 160.6 273 46.2
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 2.1e-37 160.2 262 44.3
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 4.6e-37 159.1 274 45.3
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.0e-36 157.9 261 46.7
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.0e-36 157.9 261 46.7
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 1.3e-36 157.5 274 43.1
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 3.9e-36 156.0 266 44.7
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 3.9e-36 156.0 258 43.8
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 5.1e-36 155.6 262 45.4
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 6.7e-36 155.2 270 42.6
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 1.5e-35 154.1 259 44.4
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.5e-35 154.1 259 44.4
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 1.9e-35 153.7 262 43.5
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 5.6e-35 152.1 265 46.0
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 5.6e-35 152.1 260 44.6
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 1.3e-34 151.0 260 45.0
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 1.3e-34 151.0 261 42.5
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.6e-34 150.6 263 46.4
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.6e-34 150.6 259 44.4
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.6e-34 150.6 259 44.4
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.1e-34 150.2 261 45.2
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 3.7e-34 149.4 206 46.6
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 4.8e-34 149.1 261 41.8
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 6.2e-34 148.7 267 44.6
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 1.1e-33 147.9 261 44.1
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 3.1e-33 146.4 270 46.7
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.0e-33 146.0 256 44.1
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 5.3e-33 145.6 260 43.5
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 9.0e-33 144.8 268 43.7
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 1.5e-32 144.1 268 44.0
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 2.0e-32 143.7 273 43.2
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 3.4e-32 142.9 257 44.7
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 4.5e-32 142.5 171 52.0
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 5.8e-32 142.1 262 44.3
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 7.6e-32 141.7 260 42.3
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 7.6e-32 141.7 189 51.9
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 9.9e-32 141.4 268 43.3
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 9.9e-32 141.4 267 40.4
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 1.3e-31 141.0 261 43.7
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 1.3e-31 141.0 190 51.6
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 2.9e-31 139.8 244 43.0
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 6.4e-31 138.7 263 43.3
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 6.4e-31 138.7 263 43.3
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 8.4e-31 138.3 261 42.9
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 1.1e-30 137.9 267 38.6
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 1.1e-30 137.9 286 40.6
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 1.4e-30 137.5 258 41.9
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 2.5e-30 136.7 262 40.8
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 3.2e-30 136.3 287 40.1
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 4.2e-30 136.0 261 41.4
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 5.5e-30 135.6 181 49.2
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 9.3e-30 134.8 261 41.0
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 1.2e-29 134.4 258 41.1
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 1.2e-29 134.4 258 41.1
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 1.6e-29 134.0 264 41.7
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 1.6e-29 134.0 267 40.8
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 3.5e-29 132.9 150 52.0
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 3.5e-29 132.9 262 39.7
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 1.1e-27 127.9 259 42.1
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 2.5e-27 126.7 264 41.3
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 3.3e-27 126.3 198 45.5
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 1.6e-26 124.0 209 45.5
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 2.1e-26 123.6 182 47.3
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 2.8e-26 123.2 265 39.6
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 2.8e-26 123.2 266 39.5
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 4.0e-25 119.4 203 45.3
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 9.0e-25 118.2 259 39.0
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 4.9e-23 112.5 266 38.3
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 4.9e-23 112.5 132 50.8
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 6.5e-23 112.1 264 36.7
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 6.5e-23 112.1 210 42.4
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 1.1e-22 111.3 208 40.4
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 2.5e-22 110.2 259 39.4
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 4.6e-21 105.9 255 35.3
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 6.0e-21 105.5 256 34.0
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 1.0e-20 104.8 121 53.7
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 3.9e-20 102.8 155 45.2
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 6.7e-20 102.1 256 34.4
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 8.7e-20 101.7 169 42.0
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 1.6e-18 97.4 266 37.2
PGR031G3517 Punica granatum HOM05D003503 ORTHO05D003885 4.8e-18 95.9 363 28.9
AUR62002437 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.1e-17 94.7 263 36.1
unitig_749.g14030 Utricularia gibba HOM05D003503 ORTHO05D003885 1.1e-17 94.7 253 34.8
AUR62023750 Chenopodium quinoa HOM05D003503 ORTHO05D003885 2.4e-17 93.6 262 35.5
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 2.0e-16 90.5 244 34.4
SalBow1G6855 Salvia bowleyana HOM05D003503 ORTHO05D003885 1.7e-15 87.4 255 37.3
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 2.9e-15 86.7 261 32.6
Ah.02g114090 Amaranthus hybridus HOM05D000622 ORTHO05D000475 4.6e-13 79.3 211 37.4
unitig_26.g8909 Utricularia gibba HOM05D003503 ORTHO05D003885 7.9e-13 78.6 153 42.5
MBI01_g36437_MAGBIO Magnolia biondii HOM05D003503 ORTHO05D003885 1.8e-12 77.4 238 32.4
PGR031G2261 Punica granatum HOM05D003503 ORTHO05D003885 2.3e-12 77.0 120 40.8
BcaB01g03443 Brassica carinata HOM05D002899 ORTHO05D003885 2.5e-11 73.6 76 56.6
Actinidia09377 Actinidia chinensis HOM05D003503 ORTHO05D003885 7.4e-11 72.0 72 55.6
HanXRQChr06g0172301 Helianthus annuus HOM05D003503 ORTHO05D003885 2.4e-09 67.0 63 57.1
C07p14610 Brassica napus HOM05D003503 ORTHO05D003885 4.1e-09 66.2 166 31.3
MBI04_g14263_MAGBIO Magnolia biondii HOM05D000102 ORTHO05D000138 1.0e-07 61.6 228 32.0
RcHm_v2.0_Chr7g0219161 Rosa chinensis HOM05D003503 ORTHO05D003885 2.9e-07 60.1 102 44.1
CDE05G1889 Ceratophyllum demersum HOM05D003503 ORTHO05D003885 8.5e-07 58.5 170 29.4
Zm00001eb245710 Zea mays HOM05D020767 ORTHO05D003885 8.5e-07 58.5 225 29.3
Os04g0472700 Oryza sativa ssp. japonica HOM05D003503 ORTHO05D003885 1.4e-06 57.8 216 30.6
Phvul.008G153400 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 1.4e-06 57.8 72 48.6
C04p28750 Brassica napus HOM05D003503 ORTHO05D003885 5.5e-06 55.8 95 37.9
Phvul.011G101601 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 7.2e-06 55.5 73 46.6
C03p27180 Brassica napus HOM05D003503 ORTHO05D003885 9.4e-06 55.1 75 41.3


User provided reference genes

Program Settings