Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g080180.3 Solanum lycopersicum HOM05D005019 ORTHO05D006625 4.7e-288 993.8 500 100.0
PGSC0003DMG400023686 Solanum tuberosum HOM05D005019 ORTHO05D006625 6.9e-279 963.4 500 96.6
Sopen10g030790 Solanum pennellii HOM05D005019 ORTHO05D006625 1.4e-276 955.7 500 97.0
Nitab4.5_0008299g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 4.3e-257 891.0 501 88.8
Nitab4.5_0010414g0010 Nicotiana tabacum HOM05D005019 ORTHO05D006625 1.3e-256 889.4 501 89.0
Nitab4.5_0003006g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 5.3e-255 884.0 501 88.6
Nitab4.5_0001370g0040 Nicotiana tabacum HOM05D005019 ORTHO05D006625 3.4e-254 881.3 501 88.4
Peaxi162Scf00045g00177 Petunia axillaris HOM05D005019 ORTHO05D006625 7.2e-252 873.6 502 86.5
Actinidia21157 Actinidia chinensis HOM05D005019 ORTHO05D006625 4.2e-220 768.1 501 76.8
Dinv22477 Davidia involucrata HOM05D005019 ORTHO05D006625 2.0e-214 749.2 501 75.4
Dinv34572 Davidia involucrata HOM05D005019 ORTHO05D006625 2.7e-214 748.8 501 75.2
Lj1C59T1 Lonicera japonica HOM05D005019 ORTHO05D006625 1.0e-213 746.9 501 74.5
Rhsim07G0080400 Rhododendron simsii HOM05D005019 ORTHO05D006625 1.3e-213 746.5 501 75.0
GSVIVG01000726001 Vitis vinifera HOM05D005019 ORTHO05D006625 1.7e-213 746.1 501 74.3
Lj1P543T22 Lonicera japonica HOM05D005019 ORTHO05D006625 9.5e-212 740.3 500 74.0
Cfa002330 Carpinus fangiana HOM05D005019 ORTHO05D006625 6.8e-210 734.2 502 73.1
Cc02_g22310 Coffea canephora HOM05D005019 ORTHO05D006625 3.4e-209 731.9 500 72.6
Sc04g0003030 Simmondsia chinensis HOM05D005019 ORTHO05D006625 8.3e-208 727.2 501 72.7
Migut.N02183 Erythranthe guttata HOM05D005019 ORTHO05D006625 4.1e-207 724.9 501 71.7
MELO3C020849.2 Cucumis melo HOM05D005019 ORTHO05D006625 4.5e-206 721.5 502 72.5
Ciclev10019516m.g Citrus clementina HOM05D005019 ORTHO05D006625 2.3e-205 719.2 501 71.5
FvH4_5g20520 Fragaria vesca HOM05D005019 ORTHO05D006625 2.3e-205 719.2 501 72.5
RcHm_v2.0_Chr6g0289431 Rosa chinensis HOM05D005019 ORTHO05D006625 3.8e-205 718.4 501 71.7
ClCG02G012250 Citrullus lanatus HOM05D005019 ORTHO05D006625 5.0e-205 718.0 502 72.1
Haze_24536 Corylus avellana HOM05D005019 ORTHO05D006625 5.0e-205 718.0 489 73.2
PGR044G0331 Punica granatum HOM05D005019 ORTHO05D006625 6.6e-205 717.6 506 72.1
Prupe.5G054300 Prunus persica HOM05D005019 ORTHO05D006625 1.1e-204 716.8 501 71.9
arahy.Tifrunner.gnm1.ann1.TZR8AU Arachis hypogaea HOM05D005019 ORTHO05D006625 2.5e-204 715.7 499 71.9
CANSAT35G0193 Cannabis sativa HOM05D005019 ORTHO05D006625 2.5e-204 715.7 504 71.6
FAN18G2643 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.5e-204 715.7 501 72.3
Prupe.8G231800 Prunus persica HOM05D005019 ORTHO05D006625 3.3e-204 715.3 501 72.1
CiPaw.03G257900 Carya illinoinensis HOM05D005019 ORTHO05D006625 7.3e-204 714.1 502 71.1
Manes.16G024300 Manihot esculenta HOM05D005019 ORTHO05D006625 7.3e-204 714.1 501 70.9
FAN27G0650 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.2e-203 713.4 501 71.3
CsaV3_2G016400 Cucumis sativus L. HOM05D005019 ORTHO05D006625 1.6e-203 713.0 501 72.3
FAN20G1740 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.1e-203 712.6 501 71.3
Ca_00175_v3 Cicer arietinum L. HOM05D005019 ORTHO05D006625 6.1e-203 711.1 503 71.0
Potri.005G218600 Populus trichocarpa HOM05D005019 ORTHO05D006625 8.0e-203 710.7 501 70.9
FvH4_2g22480 Fragaria vesca HOM05D005019 ORTHO05D006625 2.3e-202 709.1 501 71.1
Oeu018172.1 Olea europaea HOM05D005019 ORTHO05D006625 2.3e-202 709.1 501 71.3
FAN24G1214 Fragaria x ananassa HOM05D005019 ORTHO05D006625 5.2e-202 708.0 501 70.9
Sed0015889 Sechium edule HOM05D005019 ORTHO05D006625 8.9e-202 707.2 504 71.4
Psat1g046760 Pisum sativum HOM05D005019 ORTHO05D006625 1.2e-201 706.8 503 71.0
FAN04G2884 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.6e-201 705.7 501 71.3
MSTRG.12540 Avicennia marina HOM05D005019 ORTHO05D006625 3.4e-201 705.3 502 70.1
TAR633G0331 Trochodendron aralioides HOM05D005019 ORTHO05D006625 1.3e-200 703.4 494 71.3
Medtr2g009800 Medicago truncatula HOM05D005019 ORTHO05D006625 8.3e-200 700.7 502 70.7
FAN15G0975 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.4e-199 699.9 501 70.9
VMungo0540G2473 Vigna mungo HOM05D005019 ORTHO05D006625 1.9e-199 699.5 505 69.7
MD05G1205400 Malus domestica HOM05D005019 ORTHO05D006625 2.4e-199 699.1 500 70.6
Gohir.D11G348100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 3.2e-199 698.7 504 70.8
Eucgr.K03309 Eucalyptus grandis HOM05D005019 ORTHO05D006625 4.1e-199 698.4 502 69.9
Glyma.15G059400 Glycine max HOM05D005019 ORTHO05D006625 4.1e-199 698.4 504 69.2
Thecc.01G159500 Theobroma cacao HOM05D005019 ORTHO05D006625 4.1e-199 698.4 501 70.5
MD10G1192400 Malus domestica HOM05D005019 ORTHO05D006625 5.4e-199 698.0 500 70.6
Duzib147G1145 Durio zibethinus HOM05D005019 ORTHO05D006625 9.2e-199 697.2 501 70.7
Glyma.13G255400 Glycine max HOM05D005019 ORTHO05D006625 1.6e-198 696.4 504 70.0
Lalb_Chr19g0134621 Lupinus albus HOM05D005019 ORTHO05D006625 1.6e-198 696.4 501 69.5
Gorai.007G378500 Gossypium raimondii HOM05D005019 ORTHO05D006625 2.0e-198 696.0 504 70.8
TWI31G0602 Tripterygium wilfordii HOM05D005019 ORTHO05D006625 1.3e-197 693.3 502 69.5
SalBow6G4122 Salvia bowleyana HOM05D005019 ORTHO05D006625 1.7e-197 693.0 502 70.7
Atru.chr5.1578 Acer truncatum HOM05D005019 ORTHO05D006625 2.3e-197 692.6 504 70.6
SalBow3G3235 Salvia bowleyana HOM05D005019 ORTHO05D006625 8.6e-197 690.6 503 70.0
Gohir.A11G329100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 1.9e-196 689.5 502 69.7
Cpa.g.sc200.5 Carica papaya HOM05D005019 ORTHO05D006625 3.3e-196 688.7 502 69.5
Psat1g214520 Pisum sativum HOM05D005019 ORTHO05D006625 3.3e-196 688.7 502 70.1
Nn7g37931 Nelumbo nucifera HOM05D005019 ORTHO05D006625 4.3e-196 688.3 489 69.3
TPR.G9511 Trifolium pratense HOM05D005019 ORTHO05D006625 4.3e-196 688.3 501 69.3
DCAR_002684 Daucus carota HOM05D005019 ORTHO05D006625 1.2e-195 686.8 502 70.1
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 1.6e-195 686.4 489 70.6
Lalb_Chr03g0030271 Lupinus albus HOM05D005019 ORTHO05D006625 2.1e-195 686.0 501 68.9
Gohir.D04G014300 Gossypium hirsutum HOM05D005019 ORTHO05D006625 3.6e-195 685.3 504 69.0
Gorai.012G016900 Gossypium raimondii HOM05D005019 ORTHO05D006625 4.7e-195 684.9 504 69.2
ClCG07G000610 Citrullus lanatus HOM05D005019 ORTHO05D006625 6.2e-195 684.5 488 70.3
Phvul.006G200700 Phaseolus vulgaris HOM05D005019 ORTHO05D006625 6.2e-195 684.5 505 68.7
ECA247G2036 Erigeron canadensis HOM05D005019 ORTHO05D006625 3.1e-194 682.2 500 69.6
Ah.02g113910 Amaranthus hybridus HOM05D005019 ORTHO05D006625 1.2e-193 680.2 503 67.2
Medtr2g101620 Medicago truncatula HOM05D005019 ORTHO05D006625 1.2e-193 680.2 502 68.1
SGA_v2.0_scaffold80G25914 Striga asiatica HOM05D005019 ORTHO05D006625 2.0e-193 679.5 515 67.0
AUR62008493 Chenopodium quinoa HOM05D005019 ORTHO05D006625 4.9e-192 674.9 501 68.1
AUR62037688 Chenopodium quinoa HOM05D005019 ORTHO05D006625 4.1e-191 671.8 504 68.3
EL10Ac5g11096 Beta vulgaris HOM05D005019 ORTHO05D006625 9.2e-191 670.6 503 67.0
HanXRQChr14g0454081 Helianthus annuus HOM05D005019 ORTHO05D006625 9.2e-191 670.6 502 67.7
CSS0021329 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 7.8e-190 667.5 502 68.9
Lj1g0019097 Lotus japonicus HOM05D005019 ORTHO05D006625 3.0e-189 665.6 505 67.5
GSVIVG01003806001 Vitis vinifera HOM05D005019 ORTHO05D006625 3.0e-189 665.6 501 67.5
vmacro14869 Vaccinium macrocarpon HOM05D005019 ORTHO05D006625 8.6e-189 664.1 489 69.3
THA.LOC104806394 Tarenaya hassleriana HOM05D005019 ORTHO05D006625 3.6e-187 658.7 509 66.2
Thhalv10013183m.g Eutrema salsugineum HOM05D005019 ORTHO05D006625 8.1e-187 657.5 505 68.1
Carub.0006s1224 Capsella rubella HOM05D005019 ORTHO05D006625 5.2e-186 654.8 510 67.1
AT5G14050 Arabidopsis thaliana HOM05D005019 ORTHO05D006625 8.9e-186 654.1 507 66.1
AL6G24710 Arabidopsis lyrata HOM05D005019 ORTHO05D006625 5.8e-185 651.4 501 67.1
Aa31LG11G14850 Aethionema arabicum HOM05D005019 ORTHO05D006625 7.5e-185 651.0 502 67.1
RcHm_v2.0_Chr7g0205871 Rosa chinensis HOM05D005019 ORTHO05D006625 1.7e-184 649.8 429 76.2
Lsat_1_v5_gn_9_9921 Lactuca sativa HOM05D005019 ORTHO05D006625 3.7e-184 648.7 502 65.9
CARHR199310 Cardamine hirsuta HOM05D005019 ORTHO05D006625 6.4e-184 647.9 505 66.7
Hund02608 Selenicereus undatus HOM05D005019 ORTHO05D006625 8.3e-184 647.5 506 65.4
Gohir.A05G401500 Gossypium hirsutum HOM05D005019 ORTHO05D006625 1.1e-183 647.1 504 66.9
Sp6g29950 Schrenkiella parvula HOM05D005019 ORTHO05D006625 1.9e-183 646.4 504 67.1
HPP92_026109 Vanilla planifolia HOM05D005019 ORTHO05D006625 1.6e-182 643.3 501 64.7
Lsat_1_v5_gn_8_3120 Lactuca sativa HOM05D005019 ORTHO05D006625 6.0e-182 641.3 502 66.1
AUR62021601 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.0e-181 640.6 445 71.5
PSO210G0391 Papaver somniferum HOM05D005019 ORTHO05D006625 1.9e-180 636.3 501 65.5
Aqoxy6G01670 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 3.3e-180 635.6 500 65.2
Aqoxy5G00344 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 3.6e-179 632.1 500 64.8
PSO210G5187 Papaver somniferum HOM05D005019 ORTHO05D006625 5.2e-178 628.2 501 65.1
AUR62025557 Chenopodium quinoa HOM05D005019 ORTHO05D006625 4.9e-176 621.7 457 68.7
ATR0564G197 Amborella trichopoda HOM05D005019 ORTHO05D006625 3.2e-175 619.0 503 60.6
MBI12_g17287_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 3.2e-175 619.0 501 64.1
unitig_8.g4702 Utricularia gibba HOM05D005019 ORTHO05D006625 3.6e-171 605.5 503 60.2
Zm00001eb227850 Zea mays HOM05D005019 ORTHO05D006625 1.4e-170 603.6 503 60.8
Os07g0603200 Oryza sativa ssp. japonica HOM05D005019 ORTHO05D006625 2.4e-170 602.8 503 60.8
Lj6g0023367 Lotus japonicus HOM05D005019 ORTHO05D006625 9.0e-170 600.9 505 63.0
Thecc.05G016300 Theobroma cacao HOM05D005019 ORTHO05D006625 6.0e-166 588.2 423 70.2
SHI13722 Sapria himalayana HOM05D005019 ORTHO05D006625 3.4e-161 572.4 507 59.0
Hma1.2p1_1029F.1_g249600 Hydrangea macrophylla HOM05D005019 ORTHO05D006625 1.4e-159 567.0 348 79.3
CDE04G3201 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 1.8e-157 560.1 431 64.7
Ciclev10006829m.g Citrus clementina HOM05D005019 ORTHO05D006625 1.9e-156 556.6 498 60.8
SEGI_19346 Sequoiadendron giganteum HOM05D005019 ORTHO05D006625 1.2e-153 547.4 502 57.6
HPP92_022900 Vanilla planifolia HOM05D005019 ORTHO05D006625 1.0e-152 544.3 383 69.5
AagrBONN_evm.TU.Sc2ySwM_362.2571 Anthoceros agrestis HOM05D005019 ORTHO05D006625 1.9e-135 486.9 465 53.1
Mapoly0051s0055 Marchantia polymorpha HOM05D005019 ORTHO05D006625 2.1e-134 483.4 438 54.6
CDE02G2819 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 8.8e-133 478.0 407 61.2
SMO356G0724 Selaginella moellendorffii HOM05D005019 ORTHO05D006625 5.1e-125 452.2 503 49.1
Rhsim01G0269300 Rhododendron simsii HOM05D005019 ORTHO05D006625 9.4e-119 431.4 258 79.1
QL02p075842 Quercus lobata HOM05D005019 ORTHO05D006625 1.2e-118 431.0 441 55.3
CBR_g21842 Chara braunii HOM05D005019 ORTHO05D006625 3.9e-117 426.0 513 44.4
Pp3c26_4890 Physcomitrium patens HOM05D005019 ORTHO05D006625 3.4e-108 396.4 445 47.0
Actinidia24938 Actinidia chinensis HOM05D005019 ORTHO05D006625 5.7e-108 395.6 449 53.0
CSS0011909 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 1.8e-106 390.6 500 47.0
AUR62008687 Chenopodium quinoa HOM05D005019 ORTHO05D006625 2.3e-101 373.6 490 46.3
AagrBONN_evm.TU.Sc2ySwM_228.5554 Anthoceros agrestis HOM05D005019 ORTHO05D006625 5.4e-90 335.9 304 54.9
MBI17_g40264_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 1.2e-86 324.7 326 56.4
Cre06.g255950 Chlamydomonas reinhardtii HOM05D005019 ORTHO05D006625 2.9e-83 313.5 469 38.8
MBI17_g13392_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D012924 2.1e-78 297.4 380 47.9
MCO01G264 Micromonas commoda HOM05D005019 ORTHO05D006625 4.4e-68 263.1 454 36.3
PRCOL_00000196 Prasinoderma coloniale HOM05D005019 ORTHO05D006625 9.2e-66 255.4 329 41.6
BcaNung06034 Brassica carinata HOM05D005019 ORTHO05D006625 1.2e-65 255.0 235 59.6
TAR383G0651 Trochodendron aralioides HOM05D005019 ORTHO05D006625 7.1e-50 202.6 502 32.9
BcaB01g06348 Brassica carinata HOM05D005019 ORTHO05D006625 5.3e-37 159.8 242 43.0
Cfa024923 Carpinus fangiana HOM05D005019 ORTHO05D126389 2.5e-34 151.0 548 25.0
MD05G1205300 Malus domestica HOM05D005019 ORTHO05D048639 6.3e-30 136.3 186 46.2
QL02p076237 Quercus lobata HOM05D005019 ORTHO05D006625 6.1e-17 93.2 92 59.8
Zm00001eb227870 Zea mays HOM05D005019 ORTHO05D048639 8.5e-11 72.8 82 48.8
CSS0008724 Camellia sinensis var. sinensis HOM05D006140 ORTHO05D007834 6.1e-09 66.6 53 67.9


User provided reference genes

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