Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g079440.2 Solanum lycopersicum HOM05D005510 ORTHO05D006750 1.7e-246 855.5 426 100.0
Sopen10g030080 Solanum pennellii HOM05D005510 ORTHO05D006750 5.9e-239 830.5 426 96.9
PGSC0003DMG400008133 Solanum tuberosum HOM05D005510 ORTHO05D006750 3.4e-234 814.7 430 94.9
Peaxi162Scf00002g00419 Petunia axillaris HOM05D005510 ORTHO05D006750 8.6e-206 720.3 431 83.1
Nitab4.5_0000646g0280 Nicotiana tabacum HOM05D005510 ORTHO05D006750 1.4e-200 703.0 443 81.0
Dinv14542 Davidia involucrata HOM05D005510 ORTHO05D006750 6.9e-179 630.9 427 73.5
Cc06_g18550 Coffea canephora HOM05D005510 ORTHO05D006750 7.6e-178 627.5 422 71.8
CSS0010239 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 6.4e-177 624.4 405 74.3
Oeu008195.1 Olea europaea HOM05D005510 ORTHO05D006750 9.3e-176 620.5 420 71.0
Rhsim13G0197800 Rhododendron simsii HOM05D005510 ORTHO05D006750 2.1e-175 619.4 422 72.3
Actinidia38200 Actinidia chinensis HOM05D005510 ORTHO05D006750 1.1e-173 613.6 396 74.0
CAN.G641.38 Capsicum annuum HOM05D005510 ORTHO05D006750 1.5e-173 613.2 331 90.9
MD14G1100100 Malus domestica HOM05D005510 ORTHO05D006750 2.6e-170 602.4 416 71.6
Prupe.7G023400 Prunus persica HOM05D005510 ORTHO05D006750 3.4e-170 602.1 421 70.1
Ciclev10011846m.g Citrus clementina HOM05D005510 ORTHO05D006750 7.6e-170 600.9 418 70.8
QL07p015480 Quercus lobata HOM05D005510 ORTHO05D006750 8.4e-169 597.4 423 69.0
Psat1g087480 Pisum sativum HOM05D005510 ORTHO05D006750 2.5e-168 595.9 419 67.1
Cfa019896 Carpinus fangiana HOM05D005510 ORTHO05D006750 3.5e-167 592.0 398 71.6
Hma1.2p1_1327F.1_g275890 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 6.0e-167 591.3 406 71.7
Ca_04447_v3 Cicer arietinum L. HOM05D002043 ORTHO05D002207 1.3e-166 590.1 398 69.8
Atru.chr8.924 Acer truncatum HOM05D005510 ORTHO05D006750 1.8e-166 589.7 400 71.0
RcHm_v2.0_Chr3g0495031 Rosa chinensis HOM05D005510 ORTHO05D006750 3.0e-166 589.0 403 71.7
DCAR_020612 Daucus carota HOM05D005510 ORTHO05D006750 5.1e-166 588.2 395 72.4
Lj1C1070G2 Lonicera japonica HOM05D005510 ORTHO05D006750 5.1e-166 588.2 428 67.3
Medtr6g026730 Medicago truncatula HOM05D005510 ORTHO05D006750 8.7e-166 587.4 391 71.1
GSVIVG01025858001 Vitis vinifera HOM05D005510 ORTHO05D006750 6.3e-164 581.3 397 71.3
Glyma.05G079900 Glycine max HOM05D005510 ORTHO05D006750 1.1e-163 580.5 395 68.9
Nitab4.5_0002805g0080 Nicotiana tabacum HOM05D005510 ORTHO05D006750 1.1e-163 580.5 352 82.7
Lj5g0015267 Lotus japonicus HOM05D005510 ORTHO05D006750 4.1e-163 578.6 395 69.9
Manes.10G072300 Manihot esculenta HOM05D005510 ORTHO05D006750 6.9e-163 577.8 418 67.7
Potri.006G026100 Populus trichocarpa HOM05D005510 ORTHO05D006750 1.5e-162 576.6 431 65.7
PGR042G2248 Punica granatum HOM05D005510 ORTHO05D006750 1.5e-162 576.6 398 70.1
FAN26G2114 Fragaria x ananassa HOM05D005510 ORTHO05D006750 2.0e-162 576.2 404 69.8
Nn7g37230 Nelumbo nucifera HOM05D005510 ORTHO05D006750 2.6e-162 575.9 425 66.8
FvH4_1g29380 Fragaria vesca HOM05D005510 ORTHO05D006750 3.4e-162 575.5 403 70.0
Phvul.004G053400 Phaseolus vulgaris HOM05D005510 ORTHO05D006750 5.9e-162 574.7 408 67.6
Lsat_1_v5_gn_5_40140 Lactuca sativa HOM05D005510 ORTHO05D006750 7.6e-162 574.3 418 66.5
Cpa.g.sc33.180 Carica papaya HOM05D005510 ORTHO05D006750 1.7e-161 573.2 415 68.9
SalBow6G2337 Salvia bowleyana HOM05D005510 ORTHO05D006750 2.9e-161 572.4 397 69.0
SalBow6G2820 Salvia bowleyana HOM05D005510 ORTHO05D006750 1.1e-160 570.5 397 68.8
arahy.Tifrunner.gnm1.ann1.RHHN50 Arachis hypogaea HOM05D005510 ORTHO05D006750 7.2e-160 567.8 434 65.7
Duzib093G0795 Durio zibethinus HOM05D005510 ORTHO05D006750 7.2e-160 567.8 396 70.2
Lalb_Chr02g0157631 Lupinus albus HOM05D005510 ORTHO05D006750 7.2e-160 567.8 427 64.6
Aqoxy3G03066 Aquilegia oxysepala HOM05D005510 ORTHO05D006750 1.2e-159 567.0 391 70.8
PSO384G1661 Papaver somniferum HOM05D005510 ORTHO05D006750 2.7e-159 565.8 422 67.8
CsaV3_4G029010 Cucumis sativus L. HOM05D005510 ORTHO05D006750 3.6e-159 565.5 392 70.4
Eucgr.A02173 Eucalyptus grandis HOM05D005510 ORTHO05D006750 6.1e-159 564.7 392 70.4
Gorai.002G222700 Gossypium raimondii HOM05D005510 ORTHO05D006750 7.9e-159 564.3 396 69.2
Gohir.D01G179900 Gossypium hirsutum HOM05D005510 ORTHO05D006750 1.8e-158 563.1 396 68.9
SGA_v2.0_scaffold69G23139 Striga asiatica HOM05D005510 ORTHO05D006750 2.3e-158 562.8 399 68.7
Hund24472 Selenicereus undatus HOM05D005510 ORTHO05D006750 5.1e-158 561.6 397 67.3
MBI13_g44207_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 8.8e-158 560.8 425 65.6
PSO339G1815 Papaver somniferum HOM05D005510 ORTHO05D006750 1.5e-157 560.1 423 67.6
TWI74G1137 Tripterygium wilfordii HOM05D005510 ORTHO05D006750 1.5e-157 560.1 393 68.4
arahy.Tifrunner.gnm1.ann1.VC24PE Arachis hypogaea HOM05D005510 ORTHO05D006750 3.3e-157 558.9 456 62.7
MELO3C019166.2 Cucumis melo HOM05D005510 ORTHO05D006750 5.7e-157 558.1 392 69.6
ATR1096G068 Amborella trichopoda HOM05D005510 ORTHO05D006750 7.4e-157 557.8 422 65.9
Gohir.A01G189700 Gossypium hirsutum HOM05D005510 ORTHO05D006750 1.3e-156 557.0 404 67.8
Migut.J01685 Erythranthe guttata HOM05D005510 ORTHO05D006750 2.2e-156 556.2 429 65.0
AUR62020963 Chenopodium quinoa HOM05D005510 ORTHO05D006750 2.8e-156 555.8 436 62.8
HanXRQChr02g0047171 Helianthus annuus HOM05D005510 ORTHO05D006750 1.1e-155 553.9 409 66.5
THA.LOC104803249 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 1.0e-153 547.4 407 64.9
Sabra06G0019200 Salix brachista HOM05D005510 ORTHO05D006750 3.8e-153 545.4 449 62.1
HPP92_018208 Vanilla planifolia HOM05D005510 ORTHO05D006750 2.5e-152 542.7 391 65.2
CDE08G0225 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 7.2e-152 541.2 424 63.0
TAR623G1399 Trochodendron aralioides HOM05D005510 ORTHO05D006750 2.7e-151 539.3 434 63.1
COL.COLO4_37568 Corchorus olitorius HOM05D005510 ORTHO05D006750 4.7e-151 538.5 432 62.5
EL10Ac3g07380 Beta vulgaris HOM05D005510 ORTHO05D006750 1.0e-150 537.3 423 62.2
Aa31LG10G11690 Aethionema arabicum HOM05D005510 ORTHO05D006750 3.0e-150 535.8 398 65.6
CANSAT11G0391 Cannabis sativa HOM05D005510 ORTHO05D006750 5.1e-150 535.0 391 65.5
AL5G38220 Arabidopsis lyrata HOM05D005510 ORTHO05D006750 1.5e-149 533.5 399 65.2
Carub.0005s2357 Capsella rubella HOM05D005510 ORTHO05D006750 4.4e-149 531.9 397 66.2
AT3G56840 Arabidopsis thaliana HOM05D005510 ORTHO05D006750 2.2e-148 529.6 399 64.9
EL10Ac3g07382 Beta vulgaris HOM05D005510 ORTHO05D006750 4.8e-148 528.5 457 58.2
Haze_20353 Corylus avellana HOM05D005510 ORTHO05D006750 4.1e-147 525.4 411 64.2
BcaC07g40115 Brassica carinata HOM05D005510 ORTHO05D006750 5.3e-147 525.0 419 62.5
Thhalv10005964m.g Eutrema salsugineum HOM05D005510 ORTHO05D006750 1.2e-146 523.9 415 62.9
BolC8t50825H Brassica oleracea HOM05D005510 ORTHO05D006750 3.4e-146 522.3 397 64.7
A09p49660 Brassica napus HOM05D005510 ORTHO05D006750 5.0e-145 518.5 413 63.2
BraA09t40419Z Brassica rapa HOM05D005510 ORTHO05D006750 5.0e-145 518.5 413 63.2
Sp5g05750 Schrenkiella parvula HOM05D005510 ORTHO05D006750 1.9e-144 516.5 399 63.4
Os01g0809900 Oryza sativa ssp. japonica HOM05D005510 ORTHO05D006750 2.5e-144 516.2 415 61.0
CSS0036939 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 2.3e-142 509.6 329 73.6
unitig_749.g14152 Utricularia gibba HOM05D005510 ORTHO05D006750 5.2e-142 508.4 410 62.4
arahy.Tifrunner.gnm1.ann1.T4STFC Arachis hypogaea HOM05D005510 ORTHO05D006750 1.3e-140 503.8 399 63.2
VMungo0464G0325 Vigna mungo HOM05D005510 ORTHO05D006750 4.8e-140 501.9 484 52.7
Sc13g0000690 Simmondsia chinensis HOM05D005510 ORTHO05D006750 4.1e-139 498.8 401 62.1
BcaC07g39994 Brassica carinata HOM05D005510 ORTHO05D006750 3.6e-135 485.7 397 61.5
AUR62018456 Chenopodium quinoa HOM05D005510 ORTHO05D006750 8.5e-129 464.5 328 66.2
ClCG04G005050 Citrullus lanatus HOM05D005510 ORTHO05D006750 2.5e-128 463.0 367 63.5
Pp3c12_4730 Physcomitrium patens HOM05D005510 ORTHO05D006750 7.2e-128 461.5 397 54.4
Hma1.2p1_1327F.1_g275900 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 1.2e-125 454.1 317 71.0
ECA246G1668 Erigeron canadensis HOM05D005510 ORTHO05D006750 4.4e-125 452.2 395 57.7
Thecc.05G124100 Theobroma cacao HOM05D005510 ORTHO05D006750 2.2e-124 449.9 338 66.0
Sed0017548 Sechium edule HOM05D005510 ORTHO05D006750 3.0e-118 429.5 304 68.4
AagrBONN_evm.TU.Sc2ySwM_344.4799 Anthoceros agrestis HOM05D005510 ORTHO05D000746 2.4e-115 419.9 395 53.4
CiPaw.09G161300 Carya illinoinensis HOM05D005510 ORTHO05D006750 2.1e-111 406.8 282 69.9
CAN.G248.49 Capsicum annuum HOM05D005510 ORTHO05D006750 3.4e-109 399.4 351 62.7
Mapoly0011s0121 Marchantia polymorpha HOM05D005510 ORTHO05D006750 1.3e-108 397.5 363 52.9
SMO116G0325 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 4.6e-106 389.0 416 49.5
C08p32070 Brassica napus HOM05D005510 ORTHO05D006750 1.9e-104 383.6 307 62.9
Zm00001eb150290 Zea mays HOM05D005510 ORTHO05D006750 2.1e-103 380.2 288 61.8
MBI13_g43864_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 4.4e-101 372.5 315 59.4
arahy.Tifrunner.gnm1.ann1.MR8QPJ Arachis hypogaea HOM05D005510 ORTHO05D006750 3.7e-100 369.4 407 50.6
A09p49680 Brassica napus HOM05D005510 ORTHO05D006750 1.7e-97 360.5 300 61.0
BraA09t40424Z Brassica rapa HOM05D005510 ORTHO05D006750 6.6e-97 358.6 283 62.9
CSS0041188 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 1.7e-92 344.0 240 69.2
TPR.G23234 Trifolium pratense HOM05D005510 ORTHO05D006750 8.6e-89 331.6 213 71.4
Cre13.g574150 Chlamydomonas reinhardtii HOM05D005510 ORTHO05D006750 1.1e-86 324.7 443 42.2
THA.LOC104803303 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 4.0e-86 322.8 241 64.3
CARHR166990 Cardamine hirsuta HOM05D005510 ORTHO05D006750 3.0e-81 306.6 237 63.3
PGSC0003DMG400012053 Solanum tuberosum HOM05D005510 ORTHO05D006750 1.7e-73 280.8 145 92.4
THA.LOC104803301 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 4.8e-71 272.7 190 67.9
MSTRG.19825 Avicennia marina HOM05D005510 ORTHO05D006750 4.3e-64 249.6 187 66.8
Cfa027308 Carpinus fangiana HOM05D005510 ORTHO05D006750 5.7e-56 222.6 413 35.6
TPR.G942 Trifolium pratense HOM05D005510 ORTHO05D006750 1.6e-55 221.1 149 69.8
Manes.07G109500 Manihot esculenta HOM05D005510 ORTHO05D006750 1.3e-52 211.5 163 64.4
Manes.05G099066 Manihot esculenta HOM05D005510 ORTHO05D006750 9.3e-51 205.3 186 58.1
SEGI_04748 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 6.1e-50 202.6 170 61.2
Zm00001eb093570 Zea mays HOM05D005510 ORTHO05D006750 8.7e-49 198.7 248 43.1
CAN.G636.4 Capsicum annuum HOM05D005510 ORTHO05D006750 4.1e-46 189.9 235 51.5
SalBow7G3561 Salvia bowleyana HOM05D005510 ORTHO05D006750 4.1e-38 163.3 120 69.2
CAN.G524.4 Capsicum annuum HOM05D005510 ORTHO05D006750 1.1e-35 155.2 91 83.5
AagrBONN_evm.TU.Sc2ySwM_344.567 Anthoceros agrestis HOM05D005510 ORTHO05D006750 5.5e-35 152.9 425 30.4
CBR_g4412 Chara braunii HOM05D005510 ORTHO05D006750 2.1e-34 151.0 429 28.9
SMO356G0394 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 4.7e-34 149.8 422 29.1
Mapoly0085s0100 Marchantia polymorpha HOM05D005510 ORTHO05D006750 8.8e-33 145.6 425 28.9
Pp3c25_9310 Physcomitrium patens HOM05D005510 ORTHO05D006750 1.1e-30 138.7 438 29.2
CAN.G641.39 Capsicum annuum HOM05D005510 ORTHO05D006750 9.1e-30 135.6 96 77.1
Zm00001eb341880 Zea mays HOM05D005510 ORTHO05D006750 7.2e-27 125.9 113 51.3
SEGI_32136 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 1.7e-23 114.8 81 67.9
MD14G1091800 Malus domestica HOM05D005510 ORTHO05D006750 4.8e-23 113.2 73 69.9
PRCOL_00000521 Prasinoderma coloniale HOM05D005510 ORTHO05D006750 2.0e-21 107.8 263 31.9
CAN.G524.9 Capsicum annuum HOM05D005510 ORTHO05D020273 3.8e-20 103.6 53 90.6
MD14G1091600 Malus domestica HOM05D005510 ORTHO05D006750 5.0e-20 103.2 86 61.6
AUR62018455 Chenopodium quinoa HOM05D005510 ORTHO05D006750 8.5e-20 102.4 97 59.8
CDE09G0372 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 5.4e-14 83.2 158 38.0
MD14G1091700 Malus domestica HOM05D005510 ORTHO05D006750 8.3e-07 59.3 37 78.4


User provided reference genes

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