Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g078780.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 1.1e-71 273.9 222 100.0
Sopen10g029400 Solanum pennellii HOM05D003436 ORTHO05D003674 1.6e-38 163.7 242 74.8
PGSC0003DMG400011439 Solanum tuberosum HOM05D003436 ORTHO05D003674 1.3e-32 144.1 99 86.9
CAN.G1161.31 Capsicum annuum HOM05D003436 ORTHO05D003674 2.5e-31 139.8 100 83.0
Peaxi162Scf00003g04337 Petunia axillaris HOM05D003436 ORTHO05D003674 3.1e-29 132.9 98 80.6
Nitab4.5_0002343g0050 Nicotiana tabacum HOM05D003436 ORTHO05D003674 4.0e-29 132.5 99 80.8
Nitab4.5_0000105g0110 Nicotiana tabacum HOM05D003436 ORTHO05D003674 2.9e-27 126.3 224 45.5
Dinv14294 Davidia involucrata HOM05D003436 ORTHO05D003674 2.1e-17 93.6 91 61.5
MSTRG.19903 Avicennia marina HOM05D003436 ORTHO05D003674 4.6e-17 92.4 94 59.6
Nitab4.5_0000105g0090 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.3e-16 90.9 187 40.1
Manes.08G044900 Manihot esculenta HOM05D003436 ORTHO05D003674 2.3e-16 90.1 97 58.8
Aa31sc24G30 Aethionema arabicum HOM05D003436 ORTHO05D003674 3.0e-16 89.7 100 55.0
SGA_v2.0_scaffold105G30485 Striga asiatica HOM05D003436 ORTHO05D003674 3.0e-16 89.7 94 57.4
Prupe.7G076400 Prunus persica HOM05D003436 ORTHO05D003674 6.6e-16 88.6 90 58.9
Potri.016G046350 Populus trichocarpa HOM05D003436 ORTHO05D003674 1.1e-15 87.8 93 60.2
THA.LOC104826769 Tarenaya hassleriana HOM05D003436 ORTHO05D003674 1.5e-15 87.4 98 56.1
Eucgr.K01836 Eucalyptus grandis HOM05D003436 ORTHO05D003674 3.3e-15 86.3 85 62.4
Thecc.05G170800 Theobroma cacao HOM05D003436 ORTHO05D003674 3.3e-15 86.3 85 61.2
ECA236G0475 Erigeron canadensis HOM05D000402 ORTHO05D000263 7.3e-15 85.1 82 62.2
HanXRQChr05g0132881 Helianthus annuus HOM05D003436 ORTHO05D003674 9.6e-15 84.7 92 56.5
Lalb_Chr15g0078981 Lupinus albus HOM05D003436 ORTHO05D003674 1.3e-14 84.3 73 65.8
Peaxi162Scf00258g00520 Petunia axillaris HOM05D003436 ORTHO05D003674 1.3e-14 84.3 97 54.6
Cc06_g15980 Coffea canephora HOM05D003436 ORTHO05D003674 1.6e-14 84.0 95 57.9
Sed0015125 Sechium edule HOM05D003436 ORTHO05D003674 1.6e-14 84.0 95 56.8
COL.COLO4_33990 Corchorus olitorius HOM05D011887 ORTHO05D003674 2.8e-14 83.2 92 55.4
CANSAT64G0020 Cannabis sativa HOM05D003436 ORTHO05D003674 3.6e-14 82.8 98 53.1
Gohir.D01G178300 Gossypium hirsutum HOM05D003436 ORTHO05D003674 3.6e-14 82.8 87 57.5
Gorai.002G224800 Gossypium raimondii HOM05D003436 ORTHO05D003674 3.6e-14 82.8 87 57.5
Migut.J01829 Erythranthe guttata HOM05D003436 ORTHO05D003674 4.8e-14 82.4 89 56.2
Gohir.A01G191700 Gossypium hirsutum HOM05D003436 ORTHO05D003674 4.8e-14 82.4 85 57.6
Lj1g0001300 Lotus japonicus HOM05D003436 ORTHO05D003674 4.8e-14 82.4 105 53.3
MD12G1057800 Malus domestica HOM05D003436 ORTHO05D003674 4.8e-14 82.4 90 62.2
Sp6g36090 Schrenkiella parvula HOM05D003436 ORTHO05D003674 4.8e-14 82.4 90 55.6
BcaC06g32544 Brassica carinata HOM05D003436 ORTHO05D003674 6.2e-14 82.0 73 61.6
Nitab4.5_0008334g0020 Nicotiana tabacum HOM05D003436 ORTHO05D003674 6.2e-14 82.0 97 54.6
Sabra16G0050300 Salix brachista HOM05D003436 ORTHO05D003674 8.1e-14 81.6 96 58.3
Actinidia22034 Actinidia chinensis HOM05D003436 ORTHO05D003674 1.1e-13 81.3 86 59.3
Medtr7g093140 Medicago truncatula HOM05D003436 ORTHO05D003674 1.1e-13 81.3 90 55.6
Medtr7g093170 Medicago truncatula HOM05D003436 ORTHO05D003674 1.1e-13 81.3 95 58.9
Lj5g0013312 Lotus japonicus HOM05D003436 ORTHO05D003674 1.4e-13 80.9 102 53.9
Medtr7g093160 Medicago truncatula HOM05D003436 ORTHO05D003674 1.4e-13 80.9 86 59.3
Psat3g068920 Pisum sativum HOM05D003436 ORTHO05D003674 1.4e-13 80.9 95 56.8
Ca_25707_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 2.4e-13 80.1 88 55.7
Psat0s797g0160 Pisum sativum HOM05D003436 ORTHO05D003674 2.4e-13 80.1 96 56.2
Psat6g120960 Pisum sativum HOM05D003436 ORTHO05D003674 2.4e-13 80.1 94 56.4
arahy.Tifrunner.gnm1.ann1.00VVAL Arachis hypogaea HOM05D003436 ORTHO05D003674 3.1e-13 79.7 93 53.8
Ca_08518_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 3.1e-13 79.7 91 57.1
Glyma.19G147200 Glycine max HOM05D003436 ORTHO05D003674 3.1e-13 79.7 76 56.6
Nitab4.5_0001538g0030 Nicotiana tabacum HOM05D003436 ORTHO05D003674 3.1e-13 79.7 95 56.8
Phvul.001G143100 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 3.1e-13 79.7 94 53.2
arahy.Tifrunner.gnm1.ann1.95S5ZX Arachis hypogaea HOM05D003436 ORTHO05D003674 4.0e-13 79.3 93 52.7
MELO3C008930.2 Cucumis melo HOM05D003436 ORTHO05D003674 4.0e-13 79.3 95 54.7
Peaxi162Scf00003g04347 Petunia axillaris HOM05D003436 ORTHO05D003674 4.0e-13 79.3 95 55.8
TPR.G27745 Trifolium pratense HOM05D003436 ORTHO05D003674 4.0e-13 79.3 84 58.3
BcaB01g06002 Brassica carinata HOM05D003436 ORTHO05D003674 5.3e-13 79.0 94 54.3
Medtr1g053970 Medicago truncatula HOM05D003436 ORTHO05D003674 5.3e-13 79.0 107 48.6
Phvul.001G142000 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 5.3e-13 79.0 94 54.3
QL07p023622 Quercus lobata HOM05D003436 ORTHO05D003674 5.3e-13 79.0 82 58.5
A10p29610 Brassica napus HOM05D003436 ORTHO05D003674 6.9e-13 78.6 73 58.9
C09p69990 Brassica napus HOM05D003436 ORTHO05D003674 6.9e-13 78.6 73 58.9
BolC9t59741H Brassica oleracea HOM05D003436 ORTHO05D003674 6.9e-13 78.6 73 58.9
BraA10t45003Z Brassica rapa HOM05D003436 ORTHO05D003674 6.9e-13 78.6 73 58.9
Cpa.g.sc85.72 Carica papaya HOM05D003436 ORTHO05D003674 6.9e-13 78.6 79 58.2
Sed0019071 Sechium edule HOM05D003436 ORTHO05D003674 6.9e-13 78.6 78 60.3
Dinv14293 Davidia involucrata HOM05D003436 ORTHO05D003674 9.0e-13 78.2 88 54.5
Atru.chr8.1096 Acer truncatum HOM05D003436 ORTHO05D003674 1.2e-12 77.8 101 51.5
Ciclev10012978m.g Citrus clementina HOM05D003436 ORTHO05D003674 1.2e-12 77.8 93 52.7
Nitab4.5_0000105g0070 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.2e-12 77.8 91 56.0
Oeu033740.1 Olea europaea HOM05D003436 ORTHO05D003674 1.2e-12 77.8 92 54.3
CsaV3_4G030630 Cucumis sativus L. HOM05D003436 ORTHO05D003674 1.5e-12 77.4 95 54.7
Nitab4.5_0000324g0100 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.5e-12 77.4 94 53.2
BcaC06g32392 Brassica carinata HOM05D003436 ORTHO05D003674 2.0e-12 77.0 73 57.5
Glyma.03G144400 Glycine max HOM05D003436 ORTHO05D003674 2.0e-12 77.0 94 51.1
PSO339G4457 Papaver somniferum HOM05D003436 ORTHO05D003674 2.0e-12 77.0 91 52.7
GSVIVG01033505001 Vitis vinifera HOM05D003436 ORTHO05D003674 2.0e-12 77.0 94 56.4
C03p03320 Brassica napus HOM05D003436 ORTHO05D003674 2.6e-12 76.6 95 54.7
BolC3t12875H Brassica oleracea HOM05D003436 ORTHO05D003674 2.6e-12 76.6 95 54.7
ECA236G0537 Erigeron canadensis HOM05D003436 ORTHO05D003674 2.6e-12 76.6 85 57.6
vmacro07911 Vaccinium macrocarpon HOM05D003436 ORTHO05D003674 2.6e-12 76.6 82 54.9
Thhalv10014897m.g Eutrema salsugineum HOM05D003436 ORTHO05D003674 3.4e-12 76.3 73 58.9
Psat0s797g0240 Pisum sativum HOM05D003436 ORTHO05D003674 3.4e-12 76.3 102 50.0
TWI53G0478 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 3.4e-12 76.3 96 53.1
ClCG04G002110 Citrullus lanatus HOM05D003436 ORTHO05D003674 4.5e-12 75.9 98 53.1
MBI04_g14513_MAGBIO Magnolia biondii HOM05D003436 ORTHO05D003674 4.5e-12 75.9 91 54.9
Nitab4.5_0008334g0040 Nicotiana tabacum HOM05D003436 ORTHO05D003674 4.5e-12 75.9 85 55.3
Oeu034263.1 Olea europaea HOM05D008970 ORTHO05D003674 5.8e-12 75.5 90 55.6
RcHm_v2.0_Chr3g0479771 Rosa chinensis HOM05D003436 ORTHO05D003674 7.6e-12 75.1 81 55.6
CARHR206420 Cardamine hirsuta HOM05D003436 ORTHO05D003674 9.9e-12 74.7 90 52.2
Lalb_Chr04g0261031 Lupinus albus HOM05D003436 ORTHO05D003674 9.9e-12 74.7 94 47.9
AL6G16870 Arabidopsis lyrata HOM05D003436 ORTHO05D003674 1.3e-11 74.3 90 52.2
PGSC0003DMG400011437 Solanum tuberosum HOM05D003436 ORTHO05D003674 1.7e-11 73.9 91 52.7
PGSC0003DMG400011438 Solanum tuberosum HOM05D003436 ORTHO05D003674 1.7e-11 73.9 90 55.6
unitig_899.g15079 Utricularia gibba HOM05D003436 ORTHO05D003674 1.7e-11 73.9 76 55.3
VMungo1383G0252 Vigna mungo HOM05D003436 ORTHO05D003674 1.7e-11 73.9 94 50.0
AT5G06760 Arabidopsis thaliana HOM05D003436 ORTHO05D003674 2.2e-11 73.6 90 51.1
Sc19g0007020 Simmondsia chinensis HOM05D003436 ORTHO05D003674 2.2e-11 73.6 94 53.2
Lsat_1_v5_gn_8_75321 Lactuca sativa HOM05D003436 ORTHO05D003674 2.9e-11 73.2 91 56.0
SalBow4G2804 Salvia bowleyana HOM05D003436 ORTHO05D003674 2.9e-11 73.2 99 51.5
CDE06G2670 Ceratophyllum demersum HOM05D003436 ORTHO05D003674 3.8e-11 72.8 96 51.0
Ca_05483_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 3.8e-11 72.8 91 53.8
Rhsim03G0006400 Rhododendron simsii HOM05D003436 ORTHO05D003674 3.8e-11 72.8 87 54.0
A03p02880 Brassica napus HOM05D003436 ORTHO05D003674 4.9e-11 72.4 94 54.3
BraA03t09652Z Brassica rapa HOM05D003436 ORTHO05D003674 4.9e-11 72.4 94 54.3
MBI04_g39831_MAGBIO Magnolia biondii HOM05D003436 ORTHO05D003674 4.9e-11 72.4 91 52.7
Aqoxy7G03903 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 6.4e-11 72.0 94 47.9
Carub.0006s0565 Capsella rubella HOM05D003436 ORTHO05D003674 6.4e-11 72.0 73 58.9
Hma1.2p1_0386F.1_g141820 Hydrangea macrophylla HOM05D003436 ORTHO05D003674 6.4e-11 72.0 99 50.5
TWI74G0976 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 6.4e-11 72.0 96 51.0
BcaB01g06022 Brassica carinata HOM05D003436 ORTHO05D003674 8.4e-11 71.6 95 53.7
C03p03280 Brassica napus HOM05D003436 ORTHO05D003674 8.4e-11 71.6 101 52.5
FAN14G5712 Fragaria x ananassa HOM05D003436 ORTHO05D003674 8.4e-11 71.6 81 53.1
VMungo1383G0066 Vigna mungo HOM05D003436 ORTHO05D003674 8.4e-11 71.6 65 58.5
FAN02G3232 Fragaria x ananassa HOM05D003436 ORTHO05D003674 1.1e-10 71.2 99 51.5
FvH4_6g22410 Fragaria vesca HOM05D003436 ORTHO05D003674 2.4e-10 70.1 81 51.9
Solyc10g078760.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 2.4e-10 70.1 88 52.3
BcaB01g06026 Brassica carinata HOM05D003436 ORTHO05D003674 3.2e-10 69.7 95 53.7
ClCG10G017480 Citrullus lanatus HOM05D003436 ORTHO05D003674 3.2e-10 69.7 79 51.9
Sopen10g029380 Solanum pennellii HOM05D003436 ORTHO05D003674 3.2e-10 69.7 88 53.4
CAN.G1161.30 Capsicum annuum HOM05D003436 ORTHO05D003674 4.2e-10 69.3 70 58.6
VMungo0720G0768 Vigna mungo HOM05D003436 ORTHO05D003674 4.2e-10 69.3 76 48.7
ATR0605G384 Amborella trichopoda HOM05D003436 ORTHO05D003674 5.4e-10 68.9 94 47.9
SalBow1G8531 Salvia bowleyana HOM05D003436 ORTHO05D003674 5.4e-10 68.9 87 54.0
Solyc10g078770.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 5.4e-10 68.9 70 58.6
Sopen10g029390 Solanum pennellii HOM05D003436 ORTHO05D003674 5.4e-10 68.9 70 58.6
Nitab4.5_0000324g0070 Nicotiana tabacum HOM05D003436 ORTHO05D003674 7.1e-10 68.6 69 56.5
GSVIVG01033503001 Vitis vinifera HOM05D003436 ORTHO05D003674 7.1e-10 68.6 92 51.1
DCAR_013554 Daucus carota HOM05D003436 ORTHO05D003674 1.2e-09 67.8 98 52.0
vmacro07912 Vaccinium macrocarpon HOM05D003436 ORTHO05D003674 1.2e-09 67.8 82 52.4
CAN.G1161.29 Capsicum annuum HOM05D003436 ORTHO05D003674 1.6e-09 67.4 95 48.4
MELO3C009631.2 Cucumis melo HOM05D003436 ORTHO05D003674 1.6e-09 67.4 71 53.5
CsaV3_3G038880 Cucumis sativus L. HOM05D003436 ORTHO05D003674 1.6e-09 67.4 77 51.9
Glyma.09G112100 Glycine max HOM05D003436 ORTHO05D003674 2.1e-09 67.0 73 53.4
Rhsim03G0006300 Rhododendron simsii HOM05D003436 ORTHO05D003674 2.7e-09 66.6 99 47.5
AUR62012039 Chenopodium quinoa HOM05D003436 ORTHO05D003674 4.6e-09 65.9 93 46.2
TWI77G0090 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 4.6e-09 65.9 90 50.0
unitig_736.g22300 Utricularia gibba HOM05D000267 ORTHO05D000298 1.0e-08 64.7 94 48.9
EL10Ac3g06923 Beta vulgaris HOM05D003436 ORTHO05D003674 2.3e-08 63.5 91 47.3
Actinidia32389 Actinidia chinensis HOM05D003436 ORTHO05D003674 3.9e-08 62.8 90 50.0
HanXRQChr10g0300671 Helianthus annuus HOM05D003436 ORTHO05D003674 3.9e-08 62.8 94 52.1
Nn7g36015 Nelumbo nucifera HOM05D003436 ORTHO05D003674 5.1e-08 62.4 92 46.7
Nitab4.5_0000105g0100 Nicotiana tabacum HOM05D003436 ORTHO05D003674 8.7e-08 61.6 89 51.7
PSO017G1578 Papaver somniferum HOM05D003436 ORTHO05D003674 8.7e-08 61.6 55 58.2
Aqoxy2G03681 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 1.1e-07 61.2 59 54.2
Aqoxy7G02037 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 1.1e-07 61.2 59 54.2
arahy.Tifrunner.gnm1.ann1.6M6V4C Arachis hypogaea HOM05D003436 ORTHO05D003674 1.5e-07 60.8 55 60.0
Cfa020173 Carpinus fangiana HOM05D003436 ORTHO05D003674 1.5e-07 60.8 72 52.8
AUR62015378 Chenopodium quinoa HOM05D003436 ORTHO05D003674 1.5e-07 60.8 80 47.5
DCAR_019788 Daucus carota HOM05D003436 ORTHO05D003674 1.9e-07 60.5 74 52.7
Nitab4.5_0001538g0010 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.9e-07 60.5 89 47.2
Sc19g0007030 Simmondsia chinensis HOM05D003436 ORTHO05D003674 2.5e-07 60.1 85 45.9
Cc06_g15970 Coffea canephora HOM05D003436 ORTHO05D003674 4.3e-07 59.3 83 50.6
arahy.Tifrunner.gnm1.ann1.BAUA8N Arachis hypogaea HOM05D003436 ORTHO05D003674 5.6e-07 58.9 99 45.5
Haze_19983 Corylus avellana HOM05D003436 ORTHO05D003674 5.6e-07 58.9 73 49.3
Ah.13g075890 Amaranthus hybridus HOM05D003436 ORTHO05D003674 7.4e-07 58.5 85 49.4
Sed0013894 Sechium edule HOM05D003436 ORTHO05D003674 7.4e-07 58.5 93 46.2
Nitab4.5_0000105g0080 Nicotiana tabacum HOM05D003436 ORTHO05D003674 9.6e-07 58.2 89 49.4
Cfa020175 Carpinus fangiana HOM05D003436 ORTHO05D003674 2.1e-06 57.0 82 47.6
Ah.08g210350 Amaranthus hybridus HOM05D003436 ORTHO05D003674 2.8e-06 56.6 92 42.4
PSO170G2585 Papaver somniferum HOM05D003436 ORTHO05D003674 3.6e-06 56.2 51 56.9
Peaxi162Scf00003g04336 Petunia axillaris HOM05D003436 ORTHO05D003674 3.6e-06 56.2 86 46.5
Aqoxy3G02738 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 4.8e-06 55.8 54 53.7
Lsat_1_v5_gn_9_26540 Lactuca sativa HOM05D003436 ORTHO05D003674 6.2e-06 55.5 85 47.1


User provided reference genes

Program Settings