Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g078760.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 9.3e-44 179.9 94 100.0
Sopen10g029380 Solanum pennellii HOM05D003436 ORTHO05D003674 8.7e-42 173.3 94 96.8
PGSC0003DMG400011437 Solanum tuberosum HOM05D003436 ORTHO05D003674 1.1e-36 156.4 95 89.5
CAN.G1161.29 Capsicum annuum HOM05D003436 ORTHO05D003674 1.5e-30 136.0 90 83.3
Peaxi162Scf00003g04347 Petunia axillaris HOM05D003436 ORTHO05D003674 6.4e-29 130.6 88 78.4
Nitab4.5_0001538g0030 Nicotiana tabacum HOM05D003436 ORTHO05D003674 5.5e-28 127.5 88 77.3
Nitab4.5_0000105g0070 Nicotiana tabacum HOM05D003436 ORTHO05D003674 6.0e-27 124.0 88 75.0
Peaxi162Scf00258g00520 Petunia axillaris HOM05D003436 ORTHO05D003674 2.7e-19 98.6 92 63.0
THA.LOC104826769 Tarenaya hassleriana HOM05D003436 ORTHO05D003674 1.3e-18 96.3 89 57.3
Cc06_g15980 Coffea canephora HOM05D003436 ORTHO05D003674 5.1e-18 94.4 92 60.9
Nitab4.5_0008334g0020 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.9e-17 92.4 93 61.3
Aa31sc24G30 Aethionema arabicum HOM05D003436 ORTHO05D003674 7.4e-17 90.5 89 55.1
Nitab4.5_0000324g0100 Nicotiana tabacum HOM05D003436 ORTHO05D003674 7.4e-17 90.5 92 60.9
SGA_v2.0_scaffold105G30485 Striga asiatica HOM05D003436 ORTHO05D003674 7.4e-17 90.5 90 55.6
RcHm_v2.0_Chr3g0479771 Rosa chinensis HOM05D003436 ORTHO05D003674 6.3e-16 87.4 72 66.7
FAN02G3232 Fragaria x ananassa HOM05D003436 ORTHO05D003674 1.1e-15 86.7 94 56.4
Ciclev10012978m.g Citrus clementina HOM05D003436 ORTHO05D003674 1.8e-15 85.9 90 58.9
Aqoxy7G03903 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 5.3e-15 84.3 90 55.6
MSTRG.19903 Avicennia marina HOM05D003436 ORTHO05D003674 5.3e-15 84.3 90 53.3
TWI53G0478 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 5.3e-15 84.3 88 58.0
MELO3C008930.2 Cucumis melo HOM05D003436 ORTHO05D003674 9.0e-15 83.6 87 52.9
FvH4_6g22410 Fragaria vesca HOM05D003436 ORTHO05D003674 9.0e-15 83.6 82 59.8
Actinidia22034 Actinidia chinensis HOM05D003436 ORTHO05D003674 1.2e-14 83.2 91 51.6
C03p03320 Brassica napus HOM05D003436 ORTHO05D003674 1.5e-14 82.8 93 51.6
BolC3t12875H Brassica oleracea HOM05D003436 ORTHO05D003674 1.5e-14 82.8 93 51.6
Thhalv10014897m.g Eutrema salsugineum HOM05D003436 ORTHO05D003674 1.5e-14 82.8 93 51.6
MD12G1057800 Malus domestica HOM05D003436 ORTHO05D003674 1.5e-14 82.8 98 54.1
Nitab4.5_0000105g0110 Nicotiana tabacum HOM05D003436 ORTHO05D003674 2.0e-14 82.4 88 56.8
Prupe.7G076400 Prunus persica HOM05D003436 ORTHO05D003674 2.0e-14 82.4 86 58.1
EL10Ac3g06923 Beta vulgaris HOM05D003436 ORTHO05D003674 2.6e-14 82.0 98 53.1
FAN14G5712 Fragaria x ananassa HOM05D003436 ORTHO05D003674 2.6e-14 82.0 82 58.5
Dinv14294 Davidia involucrata HOM05D003436 ORTHO05D003674 3.4e-14 81.6 89 53.9
Manes.08G044900 Manihot esculenta HOM05D003436 ORTHO05D003674 3.4e-14 81.6 101 51.5
Peaxi162Scf00003g04337 Petunia axillaris HOM05D003436 ORTHO05D003674 3.4e-14 81.6 93 55.9
BcaC06g32544 Brassica carinata HOM05D003436 ORTHO05D003674 4.5e-14 81.3 93 50.5
CANSAT64G0020 Cannabis sativa HOM05D003436 ORTHO05D003674 4.5e-14 81.3 91 54.9
Nitab4.5_0002343g0050 Nicotiana tabacum HOM05D003436 ORTHO05D003674 4.5e-14 81.3 76 60.5
Oeu033740.1 Olea europaea HOM05D003436 ORTHO05D003674 4.5e-14 81.3 88 55.7
Sp6g36090 Schrenkiella parvula HOM05D003436 ORTHO05D003674 4.5e-14 81.3 91 51.6
A10p29610 Brassica napus HOM05D003436 ORTHO05D003674 5.9e-14 80.9 93 50.5
C09p69990 Brassica napus HOM05D003436 ORTHO05D003674 5.9e-14 80.9 93 50.5
BolC9t59741H Brassica oleracea HOM05D003436 ORTHO05D003674 5.9e-14 80.9 93 50.5
BraA10t45003Z Brassica rapa HOM05D003436 ORTHO05D003674 5.9e-14 80.9 93 50.5
CARHR206420 Cardamine hirsuta HOM05D003436 ORTHO05D003674 7.7e-14 80.5 74 58.1
Psat0s797g0240 Pisum sativum HOM05D003436 ORTHO05D003674 7.7e-14 80.5 91 51.6
Ah.08g210350 Amaranthus hybridus HOM05D003436 ORTHO05D003674 1.0e-13 80.1 68 66.2
AL6G16870 Arabidopsis lyrata HOM05D003436 ORTHO05D003674 1.0e-13 80.1 74 58.1
AT5G06760 Arabidopsis thaliana HOM05D003436 ORTHO05D003674 1.0e-13 80.1 74 58.1
Medtr7g093140 Medicago truncatula HOM05D003436 ORTHO05D003674 1.0e-13 80.1 84 53.6
Nn7g36015 Nelumbo nucifera HOM05D003436 ORTHO05D003674 1.0e-13 80.1 94 54.3
BcaB01g06002 Brassica carinata HOM05D003436 ORTHO05D003674 1.3e-13 79.7 95 49.5
TWI77G0090 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 1.3e-13 79.7 89 55.1
Atru.chr8.1096 Acer truncatum HOM05D003436 ORTHO05D003674 1.7e-13 79.3 88 52.3
BcaC06g32392 Brassica carinata HOM05D003436 ORTHO05D003674 1.7e-13 79.3 93 49.5
CsaV3_4G030630 Cucumis sativus L. HOM05D003436 ORTHO05D003674 1.7e-13 79.3 87 50.6
Nitab4.5_0008334g0040 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.7e-13 79.3 88 54.5
ATR0605G384 Amborella trichopoda HOM05D003436 ORTHO05D003674 2.2e-13 79.0 97 50.5
Cpa.g.sc85.72 Carica papaya HOM05D003436 ORTHO05D003674 2.2e-13 79.0 77 61.0
Medtr7g093160 Medicago truncatula HOM05D003436 ORTHO05D003674 2.2e-13 79.0 84 52.4
Sed0015125 Sechium edule HOM05D003436 ORTHO05D003674 2.9e-13 78.6 88 54.5
CAN.G1161.31 Capsicum annuum HOM05D003436 ORTHO05D003674 3.8e-13 78.2 88 53.4
Eucgr.K01836 Eucalyptus grandis HOM05D003436 ORTHO05D003674 3.8e-13 78.2 87 57.5
Gohir.A01G191700 Gossypium hirsutum HOM05D003436 ORTHO05D003674 3.8e-13 78.2 76 56.6
Gohir.D01G178300 Gossypium hirsutum HOM05D003436 ORTHO05D003674 3.8e-13 78.2 76 56.6
Gorai.002G224800 Gossypium raimondii HOM05D003436 ORTHO05D003674 3.8e-13 78.2 76 56.6
Migut.J01829 Erythranthe guttata HOM05D003436 ORTHO05D003674 5.0e-13 77.8 93 53.8
Medtr1g053970 Medicago truncatula HOM05D003436 ORTHO05D003674 5.0e-13 77.8 91 51.6
Medtr7g093170 Medicago truncatula HOM05D003436 ORTHO05D003674 5.0e-13 77.8 90 48.9
Psat3g068920 Pisum sativum HOM05D003436 ORTHO05D003674 5.0e-13 77.8 100 47.0
Potri.016G046350 Populus trichocarpa HOM05D003436 ORTHO05D003674 5.0e-13 77.8 89 53.9
Carub.0006s0565 Capsella rubella HOM05D003436 ORTHO05D003674 6.5e-13 77.4 74 58.1
ECA236G0475 Erigeron canadensis HOM05D000402 ORTHO05D000263 6.5e-13 77.4 89 52.8
TWI74G0976 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 6.5e-13 77.4 94 53.2
AUR62015378 Chenopodium quinoa HOM05D003436 ORTHO05D003674 8.5e-13 77.0 68 61.8
Ca_08518_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 8.5e-13 77.0 89 51.7
BcaB01g06022 Brassica carinata HOM05D003436 ORTHO05D003674 1.1e-12 76.6 93 50.5
A03p02880 Brassica napus HOM05D003436 ORTHO05D003674 1.1e-12 76.6 94 51.1
BraA03t09652Z Brassica rapa HOM05D003436 ORTHO05D003674 1.1e-12 76.6 94 51.1
PGSC0003DMG400011439 Solanum tuberosum HOM05D003436 ORTHO05D003674 1.1e-12 76.6 88 53.4
Solyc10g078780.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 1.4e-12 76.3 88 52.3
Sopen10g029400 Solanum pennellii HOM05D003436 ORTHO05D003674 1.4e-12 76.3 98 49.0
ClCG04G002110 Citrullus lanatus HOM05D003436 ORTHO05D003674 1.9e-12 75.9 90 50.0
PSO339G4457 Papaver somniferum HOM05D003436 ORTHO05D003674 1.9e-12 75.9 90 51.1
VMungo1383G0252 Vigna mungo HOM05D003436 ORTHO05D003674 1.9e-12 75.9 90 50.0
COL.COLO4_33990 Corchorus olitorius HOM05D011887 ORTHO05D003674 2.5e-12 75.5 76 52.6
AUR62012039 Chenopodium quinoa HOM05D003436 ORTHO05D003674 3.2e-12 75.1 111 47.7
Thecc.05G170800 Theobroma cacao HOM05D003436 ORTHO05D003674 3.2e-12 75.1 89 49.4
CsaV3_3G038880 Cucumis sativus L. HOM05D003436 ORTHO05D003674 4.2e-12 74.7 77 58.4
Sabra16G0050300 Salix brachista HOM05D003436 ORTHO05D003674 4.2e-12 74.7 89 52.8
Sed0019071 Sechium edule HOM05D003436 ORTHO05D003674 4.2e-12 74.7 86 52.3
GSVIVG01033505001 Vitis vinifera HOM05D003436 ORTHO05D003674 4.2e-12 74.7 83 54.2
Lalb_Chr04g0261031 Lupinus albus HOM05D003436 ORTHO05D003674 5.5e-12 74.3 76 53.9
BcaB01g06026 Brassica carinata HOM05D003436 ORTHO05D003674 7.2e-12 73.9 93 49.5
C03p03280 Brassica napus HOM05D003436 ORTHO05D003674 7.2e-12 73.9 93 50.5
Ca_25707_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 7.2e-12 73.9 85 51.8
Phvul.001G143100 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 7.2e-12 73.9 98 46.9
Glyma.19G147200 Glycine max HOM05D003436 ORTHO05D003674 9.4e-12 73.6 85 48.2
MELO3C009631.2 Cucumis melo HOM05D003436 ORTHO05D003674 1.2e-11 73.2 75 58.7
Oeu034263.1 Olea europaea HOM05D008970 ORTHO05D003674 1.2e-11 73.2 89 55.1
Glyma.03G144400 Glycine max HOM05D003436 ORTHO05D003674 1.6e-11 72.8 90 46.7
Lalb_Chr15g0078981 Lupinus albus HOM05D003436 ORTHO05D003674 1.6e-11 72.8 122 42.6
TPR.G27745 Trifolium pratense HOM05D003436 ORTHO05D003674 1.6e-11 72.8 90 47.8
ClCG10G017480 Citrullus lanatus HOM05D003436 ORTHO05D003674 2.1e-11 72.4 81 55.6
VMungo1383G0066 Vigna mungo HOM05D003436 ORTHO05D003674 2.1e-11 72.4 65 56.9
QL07p023622 Quercus lobata HOM05D003436 ORTHO05D003674 4.6e-11 71.2 76 56.6
Aqoxy2G03681 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 6.1e-11 70.9 62 61.3
Aqoxy7G02037 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 6.1e-11 70.9 62 61.3
Rhsim03G0006400 Rhododendron simsii HOM05D003436 ORTHO05D003674 6.1e-11 70.9 88 51.1
HanXRQChr05g0132881 Helianthus annuus HOM05D003436 ORTHO05D003674 7.9e-11 70.5 88 45.5
CDE06G2670 Ceratophyllum demersum HOM05D003436 ORTHO05D003674 1.0e-10 70.1 101 48.5
Lj1g0001300 Lotus japonicus HOM05D003436 ORTHO05D003674 1.0e-10 70.1 72 51.4
Nitab4.5_0000324g0070 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.0e-10 70.1 68 55.9
Psat0s797g0160 Pisum sativum HOM05D003436 ORTHO05D003674 1.0e-10 70.1 91 47.3
SalBow4G2804 Salvia bowleyana HOM05D003436 ORTHO05D003674 1.4e-10 69.7 79 51.9
arahy.Tifrunner.gnm1.ann1.95S5ZX Arachis hypogaea HOM05D003436 ORTHO05D003674 1.8e-10 69.3 86 47.7
unitig_899.g15079 Utricularia gibba HOM05D003436 ORTHO05D003674 2.3e-10 68.9 76 53.9
unitig_736.g22300 Utricularia gibba HOM05D000267 ORTHO05D000298 3.0e-10 68.6 88 52.3
arahy.Tifrunner.gnm1.ann1.00VVAL Arachis hypogaea HOM05D003436 ORTHO05D003674 3.9e-10 68.2 86 47.7
Psat6g120960 Pisum sativum HOM05D003436 ORTHO05D003674 5.1e-10 67.8 76 52.6
ECA236G0537 Erigeron canadensis HOM05D003436 ORTHO05D003674 6.7e-10 67.4 83 50.6
MBI04_g14513_MAGBIO Magnolia biondii HOM05D003436 ORTHO05D003674 6.7e-10 67.4 88 47.7
Lj5g0013312 Lotus japonicus HOM05D003436 ORTHO05D003674 8.8e-10 67.0 86 47.7
SalBow1G8531 Salvia bowleyana HOM05D003436 ORTHO05D003674 2.0e-09 65.9 87 49.4
GSVIVG01033503001 Vitis vinifera HOM05D003436 ORTHO05D003674 2.5e-09 65.5 91 44.0
Haze_19983 Corylus avellana HOM05D003436 ORTHO05D003674 3.3e-09 65.1 86 46.5
DCAR_013554 Daucus carota HOM05D003436 ORTHO05D003674 3.3e-09 65.1 100 48.0
Dinv14293 Davidia involucrata HOM05D003436 ORTHO05D003674 3.3e-09 65.1 84 48.8
VMungo0720G0768 Vigna mungo HOM05D003436 ORTHO05D003674 3.3e-09 65.1 86 47.7
arahy.Tifrunner.gnm1.ann1.BAUA8N Arachis hypogaea HOM05D003436 ORTHO05D003674 4.3e-09 64.7 99 42.4
Phvul.001G142000 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 4.3e-09 64.7 81 48.1
CAN.G1161.30 Capsicum annuum HOM05D003436 ORTHO05D003674 5.7e-09 64.3 73 50.7
Lsat_1_v5_gn_8_75321 Lactuca sativa HOM05D003436 ORTHO05D003674 5.7e-09 64.3 89 48.3
MBI04_g39831_MAGBIO Magnolia biondii HOM05D003436 ORTHO05D003674 7.4e-09 63.9 88 45.5
PSO017G1578 Papaver somniferum HOM05D003436 ORTHO05D003674 7.4e-09 63.9 55 65.5
Ca_05483_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 9.7e-09 63.5 86 46.5
Nitab4.5_0001538g0010 Nicotiana tabacum HOM05D003436 ORTHO05D003674 9.7e-09 63.5 80 47.5
Aqoxy3G02738 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 1.7e-08 62.8 62 58.1
Aqoxy6G00181 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 1.7e-08 62.8 92 46.7
Sc19g0007020 Simmondsia chinensis HOM05D003436 ORTHO05D003674 1.7e-08 62.8 88 44.3
Nitab4.5_0000105g0100 Nicotiana tabacum HOM05D003436 ORTHO05D003674 2.2e-08 62.4 80 48.8
HanXRQChr10g0300671 Helianthus annuus HOM05D003436 ORTHO05D003674 3.7e-08 61.6 88 47.7
Peaxi162Scf00003g04336 Petunia axillaris HOM05D003436 ORTHO05D003674 4.8e-08 61.2 78 51.3
Actinidia32389 Actinidia chinensis HOM05D003436 ORTHO05D003674 8.2e-08 60.5 89 47.2
Glyma.09G112100 Glycine max HOM05D003436 ORTHO05D003674 8.2e-08 60.5 68 50.0
Sed0013894 Sechium edule HOM05D003436 ORTHO05D003674 8.2e-08 60.5 75 53.3
Sc19g0007030 Simmondsia chinensis HOM05D003436 ORTHO05D003674 8.2e-08 60.5 68 50.0
Ah.13g075890 Amaranthus hybridus HOM05D003436 ORTHO05D003674 1.1e-07 60.1 76 47.4
PGSC0003DMG400011438 Solanum tuberosum HOM05D003436 ORTHO05D003674 1.1e-07 60.1 87 46.0
vmacro07911 Vaccinium macrocarpon HOM05D003436 ORTHO05D003674 1.1e-07 60.1 87 44.8
Cfa020173 Carpinus fangiana HOM05D003436 ORTHO05D003674 2.4e-07 58.9 80 47.5
Nitab4.5_0000105g0080 Nicotiana tabacum HOM05D003436 ORTHO05D003674 2.4e-07 58.9 80 46.2
arahy.Tifrunner.gnm1.ann1.6M6V4C Arachis hypogaea HOM05D003436 ORTHO05D003674 3.1e-07 58.5 96 42.7
Cfa020175 Carpinus fangiana HOM05D003436 ORTHO05D003674 4.1e-07 58.2 90 44.4
Solyc10g078770.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 5.3e-07 57.8 70 47.1
Sopen10g029390 Solanum pennellii HOM05D003436 ORTHO05D003674 5.3e-07 57.8 70 47.1
PSO170G2585 Papaver somniferum HOM05D003436 ORTHO05D003674 9.1e-07 57.0 47 68.1
Haze_19981 Corylus avellana HOM05D003436 ORTHO05D003674 2.6e-06 55.5 76 44.7
Cc06_g15970 Coffea canephora HOM05D003436 ORTHO05D003674 3.4e-06 55.1 89 42.7
Manes.09G034800 Manihot esculenta HOM05D003436 ORTHO05D003674 4.5e-06 54.7 44 68.2
Rhsim03G0006300 Rhododendron simsii HOM05D003436 ORTHO05D003674 4.5e-06 54.7 99 41.4
Actinidia32390 Actinidia chinensis HOM05D003436 ORTHO05D003674 7.7e-06 53.9 60 48.3


User provided reference genes

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