Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g074580.2 Solanum lycopersicum HOM05D007297 ORTHO05D009352 8.2e-224 780.0 382 100.0
Sopen10g027070 Solanum pennellii HOM05D007297 ORTHO05D009352 5.7e-217 757.3 382 97.6
PGSC0003DMG400016829 Solanum tuberosum HOM05D007297 ORTHO05D009352 3.1e-207 724.9 382 94.0
Nitab4.5_0001700g0150 Nicotiana tabacum HOM05D007297 ORTHO05D009352 3.6e-155 552.0 378 74.1
Peaxi162Scf00374g00734 Petunia axillaris HOM05D007297 ORTHO05D009352 6.1e-134 481.5 332 72.6
Dinv14179 Davidia involucrata HOM05D007297 ORTHO05D009352 5.7e-116 421.8 373 57.9
CSS0008013 Camellia sinensis var. sinensis HOM05D007297 ORTHO05D009352 1.7e-115 420.2 305 66.2
Ciclev10028691m.g Citrus clementina HOM05D007297 ORTHO05D009352 1.2e-110 404.1 322 60.2
Potri.004G207400 Populus trichocarpa HOM05D007297 ORTHO05D009352 3.6e-110 402.5 325 60.9
Thecc.02G146900 Theobroma cacao HOM05D007297 ORTHO05D009352 2.3e-109 399.8 294 63.6
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 8.8e-109 397.9 333 59.8
Oeu032716.1 Olea europaea HOM05D007297 ORTHO05D009352 4.8e-107 392.1 282 67.7
MELO3C015706.2 Cucumis melo HOM05D007297 ORTHO05D009352 1.4e-106 390.6 301 63.1
Manes.15G114700 Manihot esculenta HOM05D007297 ORTHO05D009352 5.3e-106 388.7 296 62.2
CsaV3_7G002000 Cucumis sativus L. HOM05D007297 ORTHO05D009352 7.0e-106 388.3 301 63.1
CANSAT25G3874 Cannabis sativa HOM05D007297 ORTHO05D009352 9.1e-106 387.9 342 55.3
AUR62010181 Chenopodium quinoa HOM05D007297 ORTHO05D009352 9.1e-106 387.9 339 58.7
Gorai.002G014500 Gossypium raimondii HOM05D007297 ORTHO05D009352 1.6e-105 387.1 294 62.9
Sed0028195 Sechium edule HOM05D007297 ORTHO05D009352 1.6e-105 387.1 299 62.9
AUR62013182 Chenopodium quinoa HOM05D007297 ORTHO05D009352 2.6e-105 386.3 391 54.0
Duzib132G0252 Durio zibethinus HOM05D007297 ORTHO05D009352 2.6e-105 386.3 333 58.3
Gohir.D01G012700 Gossypium hirsutum HOM05D007297 ORTHO05D009352 2.6e-105 386.3 294 62.9
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 2.6e-105 386.3 333 57.4
Gohir.A01G011500 Gossypium hirsutum HOM05D007297 ORTHO05D009352 5.9e-105 385.2 294 62.9
vmacro23445 Vaccinium macrocarpon HOM05D007297 ORTHO05D009352 5.9e-105 385.2 284 65.1
EL10Ac9g21544 Beta vulgaris HOM05D007297 ORTHO05D009352 7.7e-105 384.8 340 57.4
TWI79G0145 Tripterygium wilfordii HOM05D007297 ORTHO05D009352 1.0e-104 384.4 308 59.7
Hund06358 Selenicereus undatus HOM05D007297 ORTHO05D009352 1.3e-104 384.0 334 57.8
MSTRG.27611 Avicennia marina HOM05D007297 ORTHO05D009352 1.1e-103 380.9 321 58.9
MD10G1142400 Malus domestica HOM05D007297 ORTHO05D009352 4.2e-103 379.0 295 60.7
CiPaw.05G093700 Carya illinoinensis HOM05D007297 ORTHO05D009352 7.2e-103 378.3 365 54.5
ClCG02G003330 Citrullus lanatus HOM05D007297 ORTHO05D009352 1.2e-102 377.5 323 57.6
Nn5g31034 Nelumbo nucifera HOM05D007297 ORTHO05D009352 1.6e-102 377.1 326 57.7
QL11p056524 Quercus lobata HOM05D007297 ORTHO05D009352 2.7e-102 376.3 382 52.9
Rhsim05G0044900 Rhododendron simsii HOM05D007297 ORTHO05D009352 4.7e-102 375.6 380 52.4
TAR381G0094 Trochodendron aralioides HOM05D007297 ORTHO05D009352 8.0e-102 374.8 377 52.8
ECA233G4247 Erigeron canadensis HOM05D007297 ORTHO05D009352 1.0e-101 374.4 300 60.7
DCAR_006267 Daucus carota HOM05D007297 ORTHO05D009352 4.0e-101 372.5 300 59.7
MD05G1140800 Malus domestica HOM05D007297 ORTHO05D009352 4.0e-101 372.5 295 59.3
Sc18g0005810 Simmondsia chinensis HOM05D007297 ORTHO05D009352 1.5e-100 370.5 303 58.4
Eucgr.H04994 Eucalyptus grandis HOM05D007297 ORTHO05D009352 9.8e-100 367.9 385 51.7
Ah.01g017630 Amaranthus hybridus HOM05D007297 ORTHO05D009352 1.3e-99 367.5 299 62.5
Cfa010687 Carpinus fangiana HOM05D007297 ORTHO05D009352 2.2e-99 366.7 300 60.0
MBI05_g18176_MAGBIO Magnolia biondii HOM05D007297 ORTHO05D009352 1.1e-98 364.4 325 56.0
PSO170G5512 Papaver somniferum HOM05D007297 ORTHO05D009352 1.1e-98 364.4 386 50.0
Lsat_1_v5_gn_8_120880 Lactuca sativa HOM05D007297 ORTHO05D009352 1.8e-98 363.6 353 56.1
FvH4_2g16900 Fragaria vesca HOM05D007297 ORTHO05D009352 3.1e-98 362.8 341 53.1
THA.LOC104804081 Tarenaya hassleriana HOM05D007297 ORTHO05D009352 5.4e-98 362.1 328 56.1
SalBow5G1065 Salvia bowleyana HOM05D007297 ORTHO05D009352 2.0e-97 360.1 356 54.5
Migut.N01363 Erythranthe guttata HOM05D007297 ORTHO05D009352 3.5e-97 359.4 394 52.3
RcHm_v2.0_Chr6g0281021 Rosa chinensis HOM05D007297 ORTHO05D009352 4.5e-97 359.0 386 51.6
HanXRQChr16g0515151 Helianthus annuus HOM05D007297 ORTHO05D009352 5.9e-97 358.6 350 53.4
SalBow5G0092 Salvia bowleyana HOM05D007297 ORTHO05D009352 5.9e-97 358.6 355 54.4
PGR042G0917 Punica granatum HOM05D007297 ORTHO05D009352 1.0e-96 357.8 297 58.2
Aqoxy5G00964 Aquilegia oxysepala HOM05D007297 ORTHO05D009352 2.2e-96 356.7 360 52.5
Ca_10853_v3 Cicer arietinum L. HOM05D007297 ORTHO05D009352 1.9e-95 353.6 301 57.1
Lj5g0024553 Lotus japonicus HOM05D007297 ORTHO05D009352 7.2e-95 351.7 301 56.1
arahy.Tifrunner.gnm1.ann1.114EL0 Arachis hypogaea HOM05D007297 ORTHO05D009352 1.2e-94 350.9 339 54.0
COL.COLO4_33139 Corchorus olitorius HOM05D007297 ORTHO05D009352 1.6e-94 350.5 289 60.6
FAN27G2312 Fragaria x ananassa HOM05D007297 ORTHO05D009352 2.1e-94 350.1 314 54.8
FAN15G2550 Fragaria x ananassa HOM05D007297 ORTHO05D009352 2.7e-94 349.7 331 52.6
Thhalv10025549m.g Eutrema salsugineum HOM05D007297 ORTHO05D009352 3.6e-94 349.4 295 56.9
SGA_v2.0_scaffold98G29306 Striga asiatica HOM05D007297 ORTHO05D009352 3.6e-94 349.4 335 54.0
Psat6g204280 Pisum sativum HOM05D007297 ORTHO05D009352 4.7e-94 349.0 299 57.2
Glyma.10G244200 Glycine max HOM05D007297 ORTHO05D009352 6.1e-94 348.6 316 54.1
Actinidia32005 Actinidia chinensis HOM05D007297 ORTHO05D009352 5.2e-93 345.5 298 59.4
MD05G1140400 Malus domestica HOM05D007297 ORTHO05D009352 2.6e-92 343.2 295 55.3
Phvul.007G061600 Phaseolus vulgaris HOM05D007297 ORTHO05D009352 4.4e-92 342.4 314 53.5
Medtr1g102880 Medicago truncatula HOM05D007297 ORTHO05D009352 2.8e-91 339.7 301 55.5
VMungo0720G0116 Vigna mungo HOM05D007297 ORTHO05D009352 1.4e-90 337.4 344 49.7
Carub.0007s0016 Capsella rubella HOM05D007297 ORTHO05D009352 2.4e-90 336.7 295 54.9
ATR0807G066 Amborella trichopoda HOM05D007297 ORTHO05D009352 3.1e-90 336.3 306 55.6
Sp7g37510 Schrenkiella parvula HOM05D007297 ORTHO05D009352 3.1e-90 336.3 320 53.4
CARHR294010 Cardamine hirsuta HOM05D007297 ORTHO05D009352 2.7e-89 333.2 314 54.8
AL7G10130 Arabidopsis lyrata HOM05D002051 ORTHO05D002041 5.9e-89 332.0 303 54.1
AT4G38225 Arabidopsis thaliana HOM05D007297 ORTHO05D009352 4.2e-87 325.9 353 49.9
C05p07890 Brassica napus HOM05D007027 ORTHO05D008765 4.2e-87 325.9 313 52.4
BolC5t29540H Brassica oleracea HOM05D007027 ORTHO05D008765 4.2e-87 325.9 313 52.4
arahy.Tifrunner.gnm1.ann1.F5MDAV Arachis hypogaea HOM05D007297 ORTHO05D009352 1.6e-86 323.9 306 54.9
unitig_26.g9984 Utricularia gibba HOM05D007297 ORTHO05D009352 1.8e-85 320.5 378 45.5
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 8.9e-85 318.2 431 45.9
A06p06480 Brassica napus HOM05D007027 ORTHO05D008765 3.4e-84 316.2 315 52.4
Lj9A408T85 Lonicera japonica HOM05D007297 ORTHO05D009352 5.7e-84 315.5 242 61.6
BraA06t23859Z Brassica rapa HOM05D007027 ORTHO05D008765 2.9e-83 313.2 313 51.4
Aa31LG6G16890 Aethionema arabicum HOM05D007297 ORTHO05D009352 7.8e-81 305.1 282 55.3
CSS0007337 Camellia sinensis var. sinensis HOM05D007297 ORTHO05D009352 7.8e-81 305.1 255 59.2
HPP92_012647 Vanilla planifolia HOM05D007297 ORTHO05D009352 1.9e-79 300.4 338 43.2
Zm00001eb002190 Zea mays HOM05D007297 ORTHO05D009352 2.0e-76 290.4 328 47.9
Cpa.g.sc60.2 Carica papaya HOM05D007297 ORTHO05D009352 4.4e-76 289.3 216 63.9
Os03g0128800 Oryza sativa ssp. japonica HOM05D007297 ORTHO05D009352 9.5e-71 271.6 333 44.7
CDE05G3233 Ceratophyllum demersum HOM05D007297 ORTHO05D009352 1.4e-69 267.7 302 47.4
Hma1.2p1_0271F.1_g108750 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 4.6e-57 226.1 158 65.8
AagrBONN_evm.TU.Sc2ySwM_117.3353 Anthoceros agrestis HOM05D007297 ORTHO05D009352 1.0e-56 224.9 313 39.3
Mapoly0005s0259 Marchantia polymorpha HOM05D007297 ORTHO05D009352 3.0e-56 223.4 307 38.8
Pp3c17_19510 Physcomitrium patens HOM05D007297 ORTHO05D009352 2.9e-51 206.8 327 36.1
Atru.chr5.3567 Acer truncatum HOM05D007297 ORTHO05D009352 2.1e-49 200.7 172 55.8
Hma1.2p1_1276F.1_g272150 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 2.3e-48 197.2 171 57.9
CBR_g49409 Chara braunii HOM05D001007 ORTHO05D008005 1.8e-45 187.6 227 43.6
Pp3c2_4700 Physcomitrium patens HOM05D007297 ORTHO05D009352 1.4e-42 177.9 299 32.4
SMO356G0187 Selaginella moellendorffii HOM05D007297 ORTHO05D009352 2.9e-35 153.7 305 29.5
Hma1.2p1_1819F.1_g304100 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 4.2e-34 149.8 129 61.2
AL7G47220 Arabidopsis lyrata HOM05D007297 ORTHO05D009352 6.0e-33 146.0 151 51.7
MD11G1100600 Malus domestica HOM05D007297 ORTHO05D009352 1.4e-26 124.8 129 50.4
Hma1.2p1_0367F.1_g137160 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 1.9e-26 124.4 87 65.5
Cre12.g554600 Chlamydomonas reinhardtii HOM05D007297 ORTHO05D009352 7.9e-25 119.0 275 32.0
Cpa.g.sc2396.1 Carica papaya HOM05D007297 ORTHO05D009352 8.7e-24 115.5 106 58.5
Hma1.2p1_0422F.1_g150110 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 3.3e-23 113.6 132 47.7
MCO13G078 Micromonas commoda HOM05D007297 ORTHO05D009352 2.0e-20 104.4 322 29.2
MCO16G326 Micromonas commoda HOM05D007297 ORTHO05D268116 1.5e-07 61.6 140 30.0


User provided reference genes

Program Settings