Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g061990.3 Solanum lycopersicum HOM05D003666 ORTHO05D004770 2.1e-106 389.0 192 100.0
Nitab4.5_0006007g0010 Nicotiana tabacum HOM05D003666 ORTHO05D004770 9.3e-67 257.3 175 76.0
Solyc00g500172.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 9.3e-67 257.3 175 76.0
Solyc00g500189.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 9.3e-67 257.3 175 76.0
Solyc00g500253.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 9.3e-67 257.3 175 76.0
CANSAT16G0036 Cannabis sativa HOM05D003666 ORTHO05D004770 1.8e-65 253.1 266 54.5
DCAR_032432 Daucus carota HOM05D003666 ORTHO05D004770 1.5e-64 250.0 266 54.1
HanXRQMTg0579201 Helianthus annuus HOM05D003666 ORTHO05D004770 7.4e-64 247.7 289 50.9
ATMG00580 Arabidopsis thaliana HOM05D003666 ORTHO05D004770 8.2e-63 244.2 266 53.4
PSO210G0035 Papaver somniferum HOM05D003666 ORTHO05D004770 1.4e-62 243.4 274 51.8
BraSC177t45766Z Brassica rapa HOM05D003666 ORTHO05D004770 2.4e-62 242.7 280 51.1
Sed0020058 Sechium edule HOM05D003666 ORTHO05D004770 1.5e-61 240.0 289 49.8
Nitab4.5_0000172g1740 Nicotiana tabacum HOM05D003666 ORTHO05D004770 4.5e-61 238.4 300 48.0
Ah.10g028200 Amaranthus hybridus HOM05D003666 ORTHO05D004770 1.4e-59 233.4 145 81.4
Ah.10g028750 Amaranthus hybridus HOM05D003666 ORTHO05D004770 1.4e-59 233.4 145 81.4
Lsat_1_v5_gn_8_46780 Lactuca sativa HOM05D003666 ORTHO05D004770 5.5e-59 231.5 169 73.4
Lj2C1223T18 Lonicera japonica HOM05D003666 ORTHO05D004770 1.6e-58 229.9 170 73.5
RcHm_v2.0_MTg0498711 Rosa chinensis HOM05D003666 ORTHO05D004770 4.6e-58 228.4 169 72.2
BraSC48t46269Z Brassica rapa HOM05D003666 ORTHO05D004770 1.0e-57 227.3 182 67.6
BNapus_Darmor_BZH_scaffold_234p00230 Brassica napus HOM05D003666 ORTHO05D004770 3.9e-57 225.3 134 83.6
Aa31csc553G70 Aethionema arabicum HOM05D003666 ORTHO05D004770 1.1e-56 223.8 170 71.8
Lalb_Chr00c24g0407401 Lupinus albus HOM05D003666 ORTHO05D004770 2.5e-56 222.6 169 70.4
BcaC05g26880 Brassica carinata HOM05D003666 ORTHO05D004770 5.7e-56 221.5 134 82.8
CDE02G1260 Ceratophyllum demersum HOM05D003666 ORTHO05D004770 7.4e-56 221.1 158 74.1
Potri.007G061861 Populus trichocarpa HOM05D003666 ORTHO05D004770 7.4e-56 221.1 169 71.0
CARHR288310 Cardamine hirsuta HOM05D003666 ORTHO05D004770 9.7e-56 220.7 134 82.1
Medtr0082s0090 Medicago truncatula HOM05D003666 ORTHO05D004770 9.7e-56 220.7 169 69.8
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 9.7e-56 220.7 244 53.3
TAR626G1001 Trochodendron aralioides HOM05D003666 ORTHO05D004770 9.7e-56 220.7 170 71.2
TPR.G36115 Trifolium pratense HOM05D003666 ORTHO05D004770 2.8e-55 219.2 169 69.8
Aqoxy12s018 Aquilegia oxysepala HOM05D003666 ORTHO05D004770 3.7e-55 218.8 170 70.6
LjContig00439g0017912 Lotus japonicus HOM05D003666 ORTHO05D004770 3.7e-55 218.8 169 69.2
LjContig00439g0019818 Lotus japonicus HOM05D003666 ORTHO05D004770 3.7e-55 218.8 169 69.2
Glyma.10G098500 Glycine max HOM05D003666 ORTHO05D004770 3.1e-54 215.7 167 68.9
BcaC05g26875 Brassica carinata HOM05D003666 ORTHO05D004770 6.9e-54 214.5 134 81.3
Sed0023789 Sechium edule HOM05D003666 ORTHO05D004770 1.4e-49 200.3 270 47.0
arahy.Tifrunner.gnm1.ann1.U43JHG Arachis hypogaea HOM05D003666 ORTHO05D004770 1.9e-43 179.9 169 59.8
arahy.Tifrunner.gnm1.ann1.WXF1XT Arachis hypogaea HOM05D003666 ORTHO05D004770 1.9e-43 179.9 169 59.8
Lalb_Chr00c54g0413611 Lupinus albus HOM05D003666 ORTHO05D004770 1.4e-41 173.7 169 59.2
Thhalv10015926m.g Eutrema salsugineum HOM05D003666 ORTHO05D004770 1.8e-41 173.3 134 67.9
CSS0015485 Camellia sinensis var. sinensis HOM05D003666 ORTHO05D004770 6.7e-41 171.4 159 62.9
Gorai.001G166300 Gossypium raimondii HOM05D003666 ORTHO05D004770 5.3e-38 161.8 102 79.4
Nitab4.5_0000172g0120 Nicotiana tabacum HOM05D003666 ORTHO05D004770 1.3e-31 140.6 110 69.1
BolSC28t60438H Brassica oleracea HOM05D003666 ORTHO05D004770 1.1e-27 127.5 76 80.3
BolC6t36214H Brassica oleracea HOM05D003666 ORTHO05D004770 8.8e-25 117.9 125 53.6
SEGI_23011 Sequoiadendron giganteum HOM05D003666 ORTHO05D004770 1.6e-21 107.1 95 58.9
Ca_14829_v3 Cicer arietinum L. HOM05D003666 ORTHO05D004770 7.5e-16 88.2 188 41.0
TPR.G32909 Trifolium pratense HOM05D003666 ORTHO05D004770 1.7e-15 87.0 65 67.7
Cfa023044 Carpinus fangiana HOM05D003666 ORTHO05D004770 5.9e-13 78.6 83 62.7
Solyc00g500171.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 1.5e-11 73.9 39 87.2
Solyc00g500188.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 1.5e-11 73.9 39 87.2
Solyc00g500252.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 1.5e-11 73.9 39 87.2
Sopen11g018260 Solanum pennellii HOM05D003666 ORTHO05D004770 1.5e-11 73.9 39 87.2
SHI04382 Sapria himalayana HOM05D003666 ORTHO05D004770 4.3e-11 72.4 51 70.6
Potri.007G061881 Populus trichocarpa HOM05D003666 ORTHO05D004770 5.6e-11 72.0 39 84.6
SabraMtG0002200 Salix brachista HOM05D003666 ORTHO05D004770 5.6e-11 72.0 39 84.6
SalBow1G6983 Salvia bowleyana HOM05D003666 ORTHO05D004770 5.6e-11 72.0 39 84.6
unitig_87.g28022 Utricularia gibba HOM05D003666 ORTHO05D004770 5.6e-11 72.0 39 84.6
SHI36046 Sapria himalayana HOM05D003666 ORTHO05D004770 1.2e-10 70.9 39 82.1
FAN09G4889 Fragaria x ananassa HOM05D003666 ORTHO05D004770 2.1e-10 70.1 39 82.1
Nitab4.5_0000085g0130 Nicotiana tabacum HOM05D003666 ORTHO05D004770 2.1e-10 70.1 50 76.0
RcHm_v2.0_MTg0498681 Rosa chinensis HOM05D003666 ORTHO05D004770 2.1e-10 70.1 39 82.1
Ah.10g028210 Amaranthus hybridus HOM05D003666 ORTHO05D004770 2.8e-10 69.7 52 69.2
Ah.10g028760 Amaranthus hybridus HOM05D003666 ORTHO05D004770 2.8e-10 69.7 52 69.2
Lj2A1223T77 Lonicera japonica HOM05D003666 ORTHO05D004770 2.8e-10 69.7 39 82.1
Lj2A1228G70 Lonicera japonica HOM05D003666 ORTHO05D004770 2.8e-10 69.7 39 82.1
Lsat_1_v5_gn_3_108200 Lactuca sativa HOM05D003666 ORTHO05D004770 3.6e-10 69.3 37 86.5
Lsat_1_v5_gn_4_39621 Lactuca sativa HOM05D003666 ORTHO05D004770 3.6e-10 69.3 37 86.5
Solyc10g045750.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 3.6e-10 69.3 64 60.9
C04p19570 Brassica napus HOM05D003666 ORTHO05D004770 6.1e-10 68.6 39 79.5
BolC4t23491H Brassica oleracea HOM05D003666 ORTHO05D004770 6.1e-10 68.6 39 79.5
BraSC77t46648Z Brassica rapa HOM05D003666 ORTHO05D004770 6.1e-10 68.6 39 79.5
Sp3g25750 Schrenkiella parvula HOM05D003666 ORTHO05D004770 6.1e-10 68.6 39 79.5
arahy.Tifrunner.gnm1.ann1.75QRLF Arachis hypogaea HOM05D003666 ORTHO05D004770 1.0e-09 67.8 39 79.5
arahy.Tifrunner.gnm1.ann1.ZBC6LT Arachis hypogaea HOM05D003666 ORTHO05D004770 1.0e-09 67.8 39 79.5
BcaC05g26876 Brassica carinata HOM05D003666 ORTHO05D004770 1.0e-09 67.8 37 83.8
Lalb_Chr00c24g0407381 Lupinus albus HOM05D003666 ORTHO05D004770 1.0e-09 67.8 39 79.5
Lalb_Chr02g0154061 Lupinus albus HOM05D003666 ORTHO05D004770 1.0e-09 67.8 39 79.5
Nn1g09957 Nelumbo nucifera HOM05D003666 ORTHO05D004770 1.0e-09 67.8 39 79.5
Nn1g09958 Nelumbo nucifera HOM05D003666 ORTHO05D004770 1.0e-09 67.8 39 79.5
Nn1g10168 Nelumbo nucifera HOM05D003666 ORTHO05D004770 1.0e-09 67.8 39 79.5
Dinv06696 Davidia involucrata HOM05D003666 ORTHO05D016272 1.8e-09 67.0 37 83.8
HanXRQChr02g0045121 Helianthus annuus HOM05D003666 ORTHO05D004770 4.0e-09 65.9 52 67.3
Nitab4.5_0001346g0060 Nicotiana tabacum HOM05D003666 ORTHO05D004770 4.0e-09 65.9 34 91.2
CDE02G3669 Ceratophyllum demersum HOM05D003666 ORTHO05D004770 5.2e-09 65.5 39 76.9
FAN09G2550 Fragaria x ananassa HOM05D003666 ORTHO05D004770 5.2e-09 65.5 39 76.9
TAR626G0972 Trochodendron aralioides HOM05D003666 ORTHO05D004770 5.2e-09 65.5 39 76.9
FAN09G4847 Fragaria x ananassa HOM05D003666 ORTHO05D004770 6.8e-09 65.1 58 65.5
CiPaw.06G021600 Carya illinoinensis HOM05D003666 ORTHO05D004770 8.9e-09 64.7 39 74.4
SEGI_01871 Sequoiadendron giganteum HOM05D003666 ORTHO05D004770 1.2e-08 64.3 37 81.1
SHI21046 Sapria himalayana HOM05D003666 ORTHO05D004770 3.4e-08 62.8 37 78.4
Nitab4.5_0000172g1340 Nicotiana tabacum HOM05D003666 ORTHO05D004770 4.4e-08 62.4 50 66.0
Pp3c23_19840 Physcomitrium patens HOM05D003666 ORTHO05D004770 9.8e-08 61.2 35 77.1
SHI36047 Sapria himalayana HOM05D003666 ORTHO05D004770 9.8e-08 61.2 41 78.0
Solyc11g030570.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 9.8e-08 61.2 37 78.4
SHI36048 Sapria himalayana HOM05D003666 ORTHO05D004770 2.2e-07 60.1 38 73.7
Migut.L00682 Erythranthe guttata HOM05D003666 ORTHO05D004770 3.7e-07 59.3 93 40.9
TAR022G0002 Trochodendron aralioides HOM05D003666 ORTHO05D004770 4.9e-07 58.9 55 50.9
Gohir.A08G104701 Gossypium hirsutum HOM05D003666 ORTHO05D004770 6.4e-07 58.5 37 78.4
CiPaw.15G113100 Carya illinoinensis HOM05D003666 ORTHO05D004770 2.4e-06 56.6 46 56.5


User provided reference genes

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