Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 3.0e-60 236.1 262 100.0
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 7.5e-59 231.5 263 99.6
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 1.4e-57 227.3 263 98.5
CAN.G95.2 Capsicum annuum HOM05D004463 ORTHO05D004724 4.9e-42 175.6 254 82.7
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 5.0e-39 165.6 248 85.5
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 2.1e-37 160.2 263 82.5
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 2.9e-34 149.8 270 78.1
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 7.8e-32 141.7 246 82.1
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 2.3e-31 140.2 247 83.0
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 1.5e-30 137.5 245 82.9
Hund00218 Selenicereus undatus HOM05D004463 ORTHO05D004724 2.5e-30 136.7 242 74.4
Hma1.2p1_0066F.1_g035800 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 4.3e-30 136.0 250 79.2
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 4.7e-29 132.5 263 80.6
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 6.2e-29 132.1 246 76.4
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 1.4e-28 131.0 245 81.6
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 1.8e-28 130.6 247 76.9
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 1.8e-28 130.6 244 81.1
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 4.0e-28 129.4 271 78.6
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 4.0e-28 129.4 246 80.1
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 8.9e-28 128.3 268 69.8
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 1.2e-27 127.9 268 69.8
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 1.2e-27 127.9 262 73.3
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 1.5e-27 127.5 268 69.8
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 1.5e-27 127.5 262 80.2
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 2.0e-27 127.1 263 75.7
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 2.6e-27 126.7 248 76.2
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 2.6e-27 126.7 262 79.4
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 3.4e-27 126.3 266 69.9
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 4.4e-27 125.9 249 76.7
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 5.8e-27 125.6 247 76.1
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 9.9e-27 124.8 251 75.7
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 1.3e-26 124.4 246 79.3
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 1.7e-26 124.0 247 73.7
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 2.9e-26 123.2 268 69.0
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 2.9e-26 123.2 268 69.0
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 2.9e-26 123.2 247 80.6
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 2.9e-26 123.2 247 78.5
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 2.9e-26 123.2 244 76.6
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 4.9e-26 122.5 246 78.0
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 6.4e-26 122.1 266 68.4
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 1.4e-25 120.9 249 75.9
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 1.9e-25 120.6 267 70.8
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 2.4e-25 120.2 269 70.3
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 7.1e-25 118.6 247 78.1
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 9.2e-25 118.2 267 70.8
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 9.2e-25 118.2 271 70.5
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 7.8e-24 115.2 269 69.5
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 7.8e-24 115.2 245 78.0
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 1.0e-23 114.8 266 68.0
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 1.3e-23 114.4 266 68.8
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 2.3e-23 113.6 268 61.9
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 3.9e-23 112.8 269 69.9
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 3.9e-23 112.8 251 73.7
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 5.1e-23 112.5 264 70.1
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 4.3e-22 109.4 267 67.0
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 2.8e-21 106.7 252 67.1
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 8.1e-21 105.1 270 68.5
Duzib052G0336 Durio zibethinus HOM05D004463 ORTHO05D004724 1.4e-20 104.4 247 75.3
Rhsim05G0068600 Rhododendron simsii HOM05D004463 ORTHO05D004724 1.8e-20 104.0 265 77.4
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 2.4e-20 103.6 270 68.5
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.1e-20 103.2 247 77.7
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 1.2e-19 101.3 256 72.3
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.2e-19 101.3 251 76.9
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 2.6e-19 100.1 248 69.4
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 2.6e-19 100.1 250 76.8
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.6e-19 100.1 250 76.8
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 4.4e-19 99.4 53 90.6
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 5.8e-19 99.0 248 77.4
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 1.7e-18 97.4 256 72.3
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 2.2e-18 97.1 256 72.3
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 2.9e-18 96.7 267 70.4
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 2.9e-18 96.7 239 77.4
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 4.9e-18 95.9 267 56.6
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 4.9e-18 95.9 253 72.3
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 8.4e-18 95.1 251 67.7
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 1.9e-17 94.0 264 74.6
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 4.2e-17 92.8 268 63.4
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 1.2e-16 91.3 251 72.5
Sabra05G0180900 Salix brachista HOM05D004463 ORTHO05D004724 1.6e-16 90.9 246 73.2
Migut.B00180 Erythranthe guttata HOM05D004463 ORTHO05D004724 2.7e-16 90.1 181 87.3
Potri.005G234700 Populus trichocarpa HOM05D004463 ORTHO05D004724 2.7e-16 90.1 246 73.2
CSS0016875 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 4.6e-16 89.4 243 74.5
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 7.8e-16 88.6 251 65.7
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 7.8e-16 88.6 248 67.7
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 1.0e-15 88.2 245 71.8
Nitab4.5_0001154g0030 Nicotiana tabacum HOM05D061411 ORTHO05D004724 8.7e-15 85.1 81 74.1
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 1.1e-14 84.7 52 75.0
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 1.1e-14 84.7 53 73.6
Duzib132G0628 Durio zibethinus HOM05D004463 ORTHO05D004724 1.5e-14 84.3 218 77.5
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 3.3e-14 83.2 69 75.4
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 4.3e-14 82.8 136 83.1
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 5.6e-14 82.4 53 71.7
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 9.6e-14 81.6 247 72.9
Nitab4.5_0001370g0080 Nicotiana tabacum HOM05D004463 ORTHO05D004724 1.3e-13 81.3 247 38.9
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 1.6e-13 80.9 136 82.4
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 1.6e-13 80.9 136 82.4
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 1.6e-13 80.9 136 82.4
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 1.6e-13 80.9 245 75.9
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 2.1e-13 80.5 248 71.8
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 2.1e-13 80.5 53 71.7
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 3.6e-13 79.7 52 71.2
CDE02G2851 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 4.8e-13 79.3 244 70.9
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 8.1e-13 78.6 53 75.5
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 8.1e-13 78.6 52 69.2
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 8.1e-13 78.6 53 66.0
TWI36G1578 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 1.1e-12 78.2 53 69.8
Thecc.08G037600 Theobroma cacao HOM05D004463 ORTHO05D004724 2.4e-12 77.0 53 67.9
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 6.9e-12 75.5 52 71.2
Haze_03437 Corylus avellana HOM05D004463 ORTHO05D004724 2.6e-11 73.6 232 70.3
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 3.4e-11 73.2 53 62.3
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 5.8e-11 72.4 52 65.4
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 5.8e-11 72.4 50 68.0
AUR62014431 Chenopodium quinoa HOM05D004463 ORTHO05D004724 1.7e-10 70.9 46 71.7
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.7e-10 70.9 52 61.5
SGA_v2.0_scaffold32G13220 Striga asiatica HOM05D039287 ORTHO05D004724 1.1e-09 68.2 141 76.6
MBI19_g03564_MAGBIO Magnolia biondii HOM05D004463 ORTHO05D004724 1.4e-09 67.8 217 76.5
SGA_v2.0_scaffold326G48748 Striga asiatica HOM05D004463 ORTHO05D004724 1.9e-09 67.4 53 62.3
TWI75G1243 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 1.9e-09 67.4 276 54.0
AL7G10930 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 2.4e-09 67.0 49 65.3
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 3.2e-09 66.6 53 62.3
AUR62034566 Chenopodium quinoa HOM05D004463 ORTHO05D004724 5.4e-09 65.9 58 55.2
CARHR068960 Cardamine hirsuta HOM05D004463 ORTHO05D004724 1.2e-08 64.7 223 68.2
Cfa005098 Carpinus fangiana HOM05D065658 ORTHO05D004724 2.1e-08 63.9 29 89.7
EL10Ac1g00556 Beta vulgaris HOM05D004463 ORTHO05D004724 4.6e-08 62.8 93 39.8
AUR62010398 Chenopodium quinoa HOM05D004463 ORTHO05D004724 1.3e-07 61.2 107 91.6
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 2.3e-07 60.5 53 56.6
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 3.0e-07 60.1 41 68.3
AUR62016820 Chenopodium quinoa HOM05D004463 ORTHO05D004724 3.9e-07 59.7 106 91.5
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 3.9e-07 59.7 53 56.6
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 6.6e-07 58.9 50 60.0
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 6.6e-07 58.9 50 60.0
Nitab4.5_0010630g0040 Nicotiana tabacum HOM05D061411 ORTHO05D004724 1.5e-06 57.8 70 68.6
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 1.9e-06 57.4 53 52.8
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 2.5e-06 57.0 53 52.8
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 2.5e-06 57.0 43 62.8
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 2.5e-06 57.0 45 55.6
Lj8C86T7 Lonicera japonica HOM05D004463 ORTHO05D004724 3.3e-06 56.6 53 52.8
Duzib106G1221 Durio zibethinus HOM05D004463 ORTHO05D004724 4.3e-06 56.2 53 50.9
Manes.10G032800 Manihot esculenta HOM05D004463 ORTHO05D004724 4.3e-06 56.2 52 51.9
Psat5g004560 Pisum sativum HOM05D004463 ORTHO05D004724 4.3e-06 56.2 27 85.2
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 4.3e-06 56.2 53 50.9
Lj9P382T32 Lonicera japonica HOM05D004463 ORTHO05D004724 5.6e-06 55.8 152 61.2
Prupe.2G231800 Prunus persica HOM05D004463 ORTHO05D004724 5.6e-06 55.8 45 57.8
GSVIVG01011366001 Vitis vinifera HOM05D002216 ORTHO05D002011 5.6e-06 55.8 53 50.9
Nn6g32238 Nelumbo nucifera HOM05D004463 ORTHO05D004724 7.3e-06 55.5 36 75.0
Cfa001504 Carpinus fangiana HOM05D001680 ORTHO05D001596 9.6e-06 55.1 53 50.9
Haze_17039 Corylus avellana HOM05D001446 ORTHO05D001360 9.6e-06 55.1 53 50.9
Gohir.D10G224732 Gossypium hirsutum HOM05D004463 ORTHO05D004724 9.6e-06 55.1 43 58.1
GSVIVG01016581001 Vitis vinifera HOM05D004463 ORTHO05D004724 9.6e-06 55.1 53 50.9


User provided reference genes

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