Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g052650.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 7.9e-64 246.9 120 100.0
Sopen10g023370 Solanum pennellii HOM05D007001 ORTHO05D005587 3.0e-63 245.0 120 99.2
PGSC0003DMG400007729 Solanum tuberosum HOM05D007001 ORTHO05D005587 5.7e-54 214.2 120 89.2
Nitab4.5_0008874g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.0e-31 140.2 106 67.9
Nitab4.5_0007728g0020 Nicotiana tabacum HOM05D007001 ORTHO05D005587 3.9e-31 138.3 102 71.6
Solyc01g109780.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 9.7e-30 133.7 104 61.5
Sopen01g051970 Solanum pennellii HOM05D007001 ORTHO05D005587 2.2e-29 132.5 104 61.5
PGSC0003DMG400000714 Solanum tuberosum HOM05D007001 ORTHO05D005587 2.4e-28 129.0 104 60.6
Peaxi162Scf00016g00623 Petunia axillaris HOM05D007001 ORTHO05D005587 3.1e-28 128.6 104 61.5
Nitab4.5_0000308g0260 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.9e-25 119.4 103 59.2
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 4.2e-25 118.2 114 51.8
Peaxi162Scf00003g01121 Petunia axillaris HOM05D007001 ORTHO05D005587 3.6e-24 115.2 98 61.2
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 8.0e-24 114.0 93 57.0
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 8.0e-24 114.0 104 53.8
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 1.4e-23 113.2 101 47.5
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 1.4e-23 113.2 101 53.5
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 3.0e-23 112.1 96 51.0
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 4.4e-22 108.2 102 50.0
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 9.7e-22 107.1 101 50.5
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 9.7e-22 107.1 101 53.5
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 1.3e-21 106.7 101 53.5
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 2.2e-21 105.9 104 48.1
Eucgr.G01689 Eucalyptus grandis HOM05D007001 ORTHO05D005587 2.8e-21 105.5 96 51.0
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 6.3e-21 104.4 108 48.1
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 1.1e-20 103.6 104 49.0
Cc02_g17350 Coffea canephora HOM05D007001 ORTHO05D005587 1.4e-20 103.2 101 52.5
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 1.4e-20 103.2 101 45.5
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 2.4e-20 102.4 101 50.5
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 1.2e-19 100.1 101 51.5
Sabra04G0104900 Salix brachista HOM05D007001 ORTHO05D005587 2.7e-19 99.0 103 48.5
MBI10_g06730_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 3.5e-19 98.6 101 47.5
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 5.9e-19 97.8 104 45.2
Duzib132G0641 Durio zibethinus HOM05D007001 ORTHO05D005587 7.7e-19 97.4 100 44.0
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 1.3e-18 96.7 101 43.6
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 1.3e-18 96.7 79 55.7
Migut.B00223 Erythranthe guttata HOM05D007001 ORTHO05D005587 5.0e-18 94.7 83 56.6
EL10Ac9g21706 Beta vulgaris HOM05D007001 ORTHO05D005587 6.5e-18 94.4 104 44.2
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 6.5e-18 94.4 101 47.5
PSO675G1875 Papaver somniferum HOM05D007001 ORTHO05D005587 8.5e-18 94.0 100 49.0
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 1.1e-17 93.6 101 43.6
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 1.9e-17 92.8 101 45.5
Gohir.D12G029100 Gossypium hirsutum HOM05D007001 ORTHO05D005587 3.2e-17 92.0 101 40.6
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 4.2e-17 91.7 115 44.3
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 9.4e-17 90.5 102 42.2
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 9.4e-17 90.5 104 43.3
Nitab4.5_0009972g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 9.4e-17 90.5 89 55.1
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 9.4e-17 90.5 101 43.6
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 1.2e-16 90.1 101 42.6
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 1.2e-16 90.1 102 48.0
Gorai.008G029800 Gossypium raimondii HOM05D007001 ORTHO05D005587 1.6e-16 89.7 101 39.6
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 1.6e-16 89.7 101 45.5
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 1.6e-16 89.7 102 42.2
AUR62011300 Chenopodium quinoa HOM05D007001 ORTHO05D005587 2.7e-16 89.0 104 42.3
SalBow3G2815 Salvia bowleyana HOM05D007001 ORTHO05D005587 2.7e-16 89.0 84 53.6
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 6.1e-16 87.8 104 41.3
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 6.1e-16 87.8 101 37.6
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 1.4e-15 86.7 101 43.6
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 1.8e-15 86.3 83 49.4
ECA240G0129 Erigeron canadensis HOM05D007001 ORTHO05D005587 2.3e-15 85.9 95 46.3
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 3.0e-15 85.5 101 44.6
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 3.0e-15 85.5 103 43.7
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 4.0e-15 85.1 101 41.6
Ah.01g019240 Amaranthus hybridus HOM05D007001 ORTHO05D005587 5.2e-15 84.7 101 41.6
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 8.8e-15 84.0 99 42.4
Oeu020745.1 Olea europaea HOM05D000342 ORTHO05D000217 1.2e-14 83.6 94 51.1
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 2.0e-14 82.8 101 37.6
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 3.4e-14 82.0 100 44.0
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 5.7e-14 81.3 96 41.7
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 5.7e-14 81.3 103 39.8
CDE06G0685 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 9.8e-14 80.5 105 38.1
SalBow6G2324 Salvia bowleyana HOM05D007001 ORTHO05D005587 1.7e-13 79.7 78 50.0
PSO170G6310 Papaver somniferum HOM05D007001 ORTHO05D005587 2.8e-13 79.0 96 41.7
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 3.7e-13 78.6 91 44.0
PSO764G0276 Papaver somniferum HOM05D007001 ORTHO05D005587 6.3e-13 77.8 96 41.7
arahy.Tifrunner.gnm1.ann1.I3TCZM Arachis hypogaea HOM05D007001 ORTHO05D005587 8.3e-13 77.4 100 43.0
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 8.3e-13 77.4 93 40.9
Medtr4g070420 Medicago truncatula HOM05D007001 ORTHO05D005587 1.8e-12 76.3 93 41.9
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 1.2e-11 73.6 96 42.7
arahy.Tifrunner.gnm1.ann1.M1RWF9 Arachis hypogaea HOM05D007001 ORTHO05D005587 1.6e-11 73.2 82 43.9
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 1.6e-11 73.2 82 41.5
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 4.5e-11 71.6 56 62.5
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 4.5e-11 71.6 82 43.9
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 7.7e-11 70.9 82 43.9
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 1.0e-10 70.5 93 38.7
Sed0007775 Sechium edule HOM05D007001 ORTHO05D005587 1.3e-10 70.1 82 45.1
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 2.9e-10 68.9 101 39.6
ClCG11G004280 Citrullus lanatus HOM05D007001 ORTHO05D005587 8.6e-10 67.4 84 42.9
MELO3C023308.2 Cucumis melo HOM05D007001 ORTHO05D005587 8.6e-10 67.4 78 46.2
CsaV3_2G014890 Cucumis sativus L. HOM05D007001 ORTHO05D005587 1.1e-09 67.0 78 46.2
DCAR_001566 Daucus carota HOM05D007001 ORTHO05D005587 1.1e-09 67.0 73 41.1
Aqoxy6G01158 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 2.5e-09 65.9 104 39.4
Aa31LG8G13740 Aethionema arabicum HOM05D008776 ORTHO05D005587 3.3e-09 65.5 86 37.2
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 1.2e-08 63.5 85 40.0
AL3G52490 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 1.6e-08 63.2 71 45.1
Lalb_Chr03g0025591 Lupinus albus HOM05D007001 ORTHO05D005587 1.6e-08 63.2 77 39.0
Lalb_Chr01g0002461 Lupinus albus HOM05D007001 ORTHO05D005587 4.7e-08 61.6 81 39.5
DCAR_028976 Daucus carota HOM05D007001 ORTHO05D005587 6.1e-08 61.2 74 39.2
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 1.0e-07 60.5 77 41.6
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 1.0e-07 60.5 90 38.9
Sp3g29580 Schrenkiella parvula HOM05D008776 ORTHO05D005587 1.8e-07 59.7 96 37.5
BcaB03g16349 Brassica carinata HOM05D008776 ORTHO05D005587 2.3e-07 59.3 71 43.7
SGA_v2.0_scaffold125G33736 Striga asiatica HOM05D007001 ORTHO05D005587 2.3e-07 59.3 83 38.6
THA.LOC104807308 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 2.3e-07 59.3 79 34.2
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 3.0e-07 58.9 71 40.8
Thhalv10022682m.g Eutrema salsugineum HOM05D008776 ORTHO05D005587 4.0e-07 58.5 71 40.8
A07p04560 Brassica napus HOM05D008776 ORTHO05D005587 1.2e-06 57.0 71 43.7
BraA07t28245Z Brassica rapa HOM05D008776 ORTHO05D005587 1.2e-06 57.0 71 43.7
BcaC06g36144 Brassica carinata HOM05D008776 ORTHO05D005587 1.5e-06 56.6 71 42.3
C07p07280 Brassica napus HOM05D008776 ORTHO05D005587 1.5e-06 56.6 71 42.3
BolC7t41148H Brassica oleracea HOM05D008776 ORTHO05D005587 1.5e-06 56.6 71 42.3
Carub.0003s3009 Capsella rubella HOM05D008776 ORTHO05D005587 3.4e-06 55.5 71 39.4
BcaB08g34642 Brassica carinata HOM05D008776 ORTHO05D005587 7.5e-06 54.3 93 32.3


User provided reference genes

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