Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g052640.3 Solanum lycopersicum HOM05D003888 ORTHO05D007163 1.0e-157 560.1 286 100.0
PGSC0003DMG400010920 Solanum tuberosum HOM05D003888 ORTHO05D007163 8.4e-88 327.8 263 62.0
Solyc04g005730.3 Solanum lycopersicum HOM05D003888 ORTHO05D007163 2.5e-84 316.2 301 54.5
PGSC0003DMG400038965 Solanum tuberosum HOM05D003888 ORTHO05D007163 4.3e-84 315.5 264 62.5
CAN.G1224.2 Capsicum annuum HOM05D003888 ORTHO05D007163 3.8e-80 302.4 292 54.5
PGSC0003DMG400046763 Solanum tuberosum HOM05D003888 ORTHO05D007163 4.8e-75 285.4 262 55.7
Sopen06g011310 Solanum pennellii HOM05D003888 ORTHO05D007163 7.4e-60 235.0 280 45.4
Sopen11g014670 Solanum pennellii HOM05D003888 ORTHO05D007163 2.1e-59 233.4 147 76.9
PGSC0003DMG400035178 Solanum tuberosum HOM05D003888 ORTHO05D007163 2.2e-51 206.8 161 65.8
PGSC0003DMG400047283 Solanum tuberosum HOM05D003888 ORTHO05D007163 4.8e-51 205.7 151 64.9
PGSC0003DMG400037695 Solanum tuberosum HOM05D003888 ORTHO05D007163 1.1e-50 204.5 171 60.8
PGSC0003DMG400045356 Solanum tuberosum HOM05D003888 ORTHO05D007163 1.4e-50 204.1 205 53.2
PGSC0003DMG400035776 Solanum tuberosum HOM05D003888 ORTHO05D007163 4.6e-46 189.1 258 40.3
PGSC0003DMG400039182 Solanum tuberosum HOM05D003888 ORTHO05D007163 1.0e-45 188.0 262 41.2
Solyc11g032040.3 Solanum lycopersicum HOM05D000107 ORTHO05D000062 9.1e-42 174.9 249 44.2
PGSC0003DMG400037028 Solanum tuberosum HOM05D003888 ORTHO05D007163 1.3e-40 171.0 255 38.4
EL10Ac1g02206 Beta vulgaris HOM05D000107 ORTHO05D000062 1.7e-40 170.6 273 35.2
PGSC0003DMG400016021 Solanum tuberosum HOM05D003888 ORTHO05D007163 1.0e-37 161.4 131 58.0
CAN.G472.23 Capsicum annuum HOM05D003888 ORTHO05D007163 5.2e-37 159.1 166 48.8
PGSC0003DMG400038980 Solanum tuberosum HOM05D003888 ORTHO05D007163 2.0e-36 157.1 108 74.1
PGSC0003DMG400036776 Solanum tuberosum HOM05D003888 ORTHO05D007163 2.6e-36 156.8 164 53.7
AUR62024779 Chenopodium quinoa HOM05D003888 ORTHO05D007163 4.8e-35 152.5 296 32.4
PGSC0003DMG400045139 Solanum tuberosum HOM05D003888 ORTHO05D007163 1.4e-34 151.0 99 78.8
PGSC0003DMG400042993 Solanum tuberosum HOM05D003888 ORTHO05D007163 2.6e-33 146.7 107 72.0
PGSC0003DMG400035226 Solanum tuberosum HOM05D003888 ORTHO05D007163 1.7e-32 144.1 161 50.3
Solyc10g017750.2 Solanum lycopersicum HOM05D003888 ORTHO05D007163 5.0e-32 142.5 233 39.1
Hund12964 Selenicereus undatus HOM05D009146 ORTHO05D011649 5.5e-31 139.0 298 30.9
PGSC0003DMG400020859 Solanum tuberosum HOM05D003888 ORTHO05D007163 5.5e-31 139.0 96 63.5
AUR62025805 Chenopodium quinoa HOM05D003888 ORTHO05D007163 1.4e-29 134.4 289 30.8
PGSC0003DMG400009654 Solanum tuberosum HOM05D003888 ORTHO05D007163 1.8e-29 134.0 189 38.6
EL10Ac4g09043 Beta vulgaris HOM05D003888 ORTHO05D007163 5.2e-29 132.5 244 33.6
EL10Ac5g11837 Beta vulgaris HOM05D000107 ORTHO05D000062 6.7e-29 132.1 244 33.6
Sopen02g012530 Solanum pennellii HOM05D003888 ORTHO05D007163 1.2e-28 131.3 122 54.9
EL10Ac9g20905 Beta vulgaris HOM05D003888 ORTHO05D007163 1.5e-28 131.0 307 28.3
Solyc02g038809.1 Solanum lycopersicum HOM05D003888 ORTHO05D007163 2.6e-28 130.2 181 43.1
PGSC0003DMG400037082 Solanum tuberosum HOM05D003888 ORTHO05D007163 9.7e-28 128.3 171 43.9
EL10Ac9g20933 Beta vulgaris HOM05D000107 ORTHO05D007163 2.2e-27 127.1 264 30.3
Solyc10g049330.3 Solanum lycopersicum HOM05D003888 ORTHO05D007163 2.2e-27 127.1 182 39.0
EL10Ac8g19343 Beta vulgaris HOM05D000107 ORTHO05D007163 2.8e-27 126.7 307 27.7
Hund03533 Selenicereus undatus HOM05D009146 ORTHO05D011649 3.7e-27 126.3 277 28.9
EL10Ac4g08946 Beta vulgaris HOM05D000107 ORTHO05D007163 8.2e-27 125.2 263 28.9
EL10Ac7g16364 Beta vulgaris HOM05D000107 ORTHO05D000062 1.4e-26 124.4 236 32.2
CAN.G1172.11 Capsicum annuum HOM05D003888 ORTHO05D007163 1.8e-26 124.0 102 60.8
EL10Ac9g20782 Beta vulgaris HOM05D010317 ORTHO05D007163 5.3e-26 122.5 300 29.3
EL10Ac5g11043 Beta vulgaris HOM05D000107 ORTHO05D007163 2.0e-25 120.6 253 30.4
EL10Ac9g20800 Beta vulgaris HOM05D003888 ORTHO05D007163 2.0e-25 120.6 276 27.9
PGSC0003DMG400036468 Solanum tuberosum HOM05D003888 ORTHO05D007163 2.0e-25 120.6 265 32.8
CAN.G380.8 Capsicum annuum HOM05D003888 ORTHO05D007163 2.7e-25 120.2 118 58.5
Sopen03g013860 Solanum pennellii HOM05D000004 ORTHO05D007166 2.7e-25 120.2 81 65.4
Sopen12g012320 Solanum pennellii HOM05D003888 ORTHO05D007163 2.7e-25 120.2 123 55.3
EL10Ac1g01767 Beta vulgaris HOM05D003888 ORTHO05D007163 1.0e-24 118.2 236 31.8
EL10Ac4g09128 Beta vulgaris HOM05D000107 ORTHO05D000062 1.0e-24 118.2 244 30.7
AUR62022285 Chenopodium quinoa HOM05D003888 ORTHO05D007163 1.3e-24 117.9 286 28.3
Solyc07g039250.1 Solanum lycopersicum HOM05D003888 ORTHO05D007163 1.3e-24 117.9 164 42.1
EL10Ac1g02033 Beta vulgaris HOM05D003888 ORTHO05D007163 1.7e-24 117.5 288 29.2
EL10Ac2g02915 Beta vulgaris HOM05D000107 ORTHO05D000062 1.7e-24 117.5 236 30.1
EL10Ac6g13838 Beta vulgaris HOM05D003888 ORTHO05D007163 2.9e-24 116.7 244 30.7
PGSC0003DMG400030290 Solanum tuberosum HOM05D003888 ORTHO05D007163 2.9e-24 116.7 70 68.6
EL10Ac6g14230 Beta vulgaris HOM05D000107 ORTHO05D000062 3.8e-24 116.3 233 31.8
EL10Ac4g09268 Beta vulgaris HOM05D000107 ORTHO05D000062 2.5e-23 113.6 253 29.6
PGSC0003DMG400034519 Solanum tuberosum HOM05D003888 ORTHO05D007163 2.7e-22 110.2 97 52.6
EL10Ac2g03235 Beta vulgaris HOM05D000107 ORTHO05D000062 4.7e-22 109.4 236 30.1
EL10Ac3g06448 Beta vulgaris HOM05D003888 ORTHO05D007163 1.8e-21 107.5 232 30.6
PGSC0003DMG400040445 Solanum tuberosum HOM05D003888 ORTHO05D007163 1.8e-21 107.5 78 57.7
CAN.G171.3 Capsicum annuum HOM05D003888 ORTHO05D007163 5.2e-21 105.9 96 56.2
Sopen09g013320 Solanum pennellii HOM05D003888 ORTHO05D007163 8.8e-21 105.1 101 53.5
PGSC0003DMG400041034 Solanum tuberosum HOM05D003888 ORTHO05D007163 1.2e-20 104.8 62 85.5
AUR62029973 Chenopodium quinoa HOM05D003888 ORTHO05D007163 2.6e-20 103.6 249 26.1
Sopen10g017940 Solanum pennellii HOM05D003888 ORTHO05D007163 3.4e-20 103.2 152 38.8
PGSC0003DMG400034991 Solanum tuberosum HOM05D003888 ORTHO05D007163 4.4e-20 102.8 84 63.1
CAN.G647.20 Capsicum annuum HOM05D003888 ORTHO05D007163 3.7e-19 99.8 163 39.9
PGSC0003DMG400043596 Solanum tuberosum HOM05D003888 ORTHO05D007163 3.7e-19 99.8 77 66.2
EL10Ac2g03866 Beta vulgaris HOM05D000107 ORTHO05D007163 1.1e-18 98.2 210 31.0
PGSC0003DMG400039058 Solanum tuberosum HOM05D003888 ORTHO05D007163 1.8e-18 97.4 97 52.6
EL10Ac8g19540 Beta vulgaris HOM05D000107 ORTHO05D000062 2.4e-18 97.1 228 28.5
EL10Ac2g03313 Beta vulgaris HOM05D000107 ORTHO05D000062 4.1e-18 96.3 182 32.4
Solyc10g052840.1 Solanum lycopersicum HOM05D003888 ORTHO05D007163 4.1e-18 96.3 79 60.8
PGSC0003DMG400047292 Solanum tuberosum HOM05D003888 ORTHO05D007163 9.1e-18 95.1 62 80.6
Solyc03g065230.1 Solanum lycopersicum HOM05D003888 ORTHO05D007163 1.6e-17 94.4 203 30.0
Solyc07g021500.1 Solanum lycopersicum HOM05D003888 ORTHO05D007163 2.0e-17 94.0 74 66.2
PGSC0003DMG400044731 Solanum tuberosum HOM05D003888 ORTHO05D007163 2.0e-17 94.0 132 40.2
PGSC0003DMG400034794 Solanum tuberosum HOM05D003888 ORTHO05D007163 3.5e-17 93.2 59 81.4
Sopen02g008250 Solanum pennellii HOM05D003888 ORTHO05D007163 4.5e-17 92.8 148 36.5
PGSC0003DMG400032589 Solanum tuberosum HOM05D003888 ORTHO05D007163 4.5e-17 92.8 87 47.1
PGSC0003DMG400042112 Solanum tuberosum HOM05D000107 ORTHO05D000062 4.5e-17 92.8 67 73.1
Nitab4.5_0012868g0030 Nicotiana tabacum HOM05D003888 ORTHO05D007163 7.7e-17 92.0 76 55.3
Sopen11g016570 Solanum pennellii HOM05D003888 ORTHO05D007163 1.0e-16 91.7 74 66.2
PGSC0003DMG400003494 Solanum tuberosum HOM05D003888 ORTHO05D007163 1.3e-16 91.3 240 28.3
Solyc10g052870.1 Solanum lycopersicum HOM05D003888 ORTHO05D007163 1.7e-16 90.9 62 72.6
PGSC0003DMG400036303 Solanum tuberosum HOM05D003888 ORTHO05D007163 1.7e-16 90.9 132 36.4
Sopen12g014930 Solanum pennellii HOM05D003888 ORTHO05D007163 2.2e-16 90.5 100 45.0
PGSC0003DMG400019004 Solanum tuberosum HOM05D003888 ORTHO05D007163 2.2e-16 90.5 60 81.7
Sopen07g014660 Solanum pennellii HOM05D003888 ORTHO05D007163 6.5e-16 89.0 84 50.0
Nitab4.5_0012229g0010 Nicotiana tabacum HOM05D003888 ORTHO05D007163 8.5e-16 88.6 173 32.9
Solyc07g026860.4 Solanum lycopersicum HOM05D003888 ORTHO05D007163 8.5e-16 88.6 84 50.0
Sc17g0003010 Simmondsia chinensis HOM05D010546 ORTHO05D013352 1.1e-15 88.2 125 37.6
Nitab4.5_0000013g0370 Nicotiana tabacum HOM05D003888 ORTHO05D007163 1.9e-15 87.4 131 36.6
PGSC0003DMG400041412 Solanum tuberosum HOM05D003888 ORTHO05D007163 2.5e-15 87.0 70 62.9
PGSC0003DMG400019003 Solanum tuberosum HOM05D003888 ORTHO05D007163 3.2e-15 86.7 53 83.0
Solyc12g035290.1 Solanum lycopersicum HOM05D003888 ORTHO05D007163 5.5e-15 85.9 125 37.6
SalBow6G6573 Salvia bowleyana HOM05D003888 ORTHO05D007163 7.2e-15 85.5 186 30.1
PGSC0003DMG400010915 Solanum tuberosum HOM05D003888 ORTHO05D007163 7.2e-15 85.5 66 62.1
EL10Ac6g13912 Beta vulgaris HOM05D000107 ORTHO05D000062 9.5e-15 85.1 209 26.3
Solyc07g017907.1 Solanum lycopersicum HOM05D003888 ORTHO05D007163 9.5e-15 85.1 74 56.8
PGSC0003DMG400005532 Solanum tuberosum HOM05D000021 ORTHO05D007163 9.5e-15 85.1 65 66.2
Hund15065 Selenicereus undatus HOM05D009146 ORTHO05D011649 1.6e-14 84.3 102 42.2
AUR62039442 Chenopodium quinoa HOM05D000107 ORTHO05D000062 2.8e-14 83.6 129 35.7
PGSC0003DMG400013128 Solanum tuberosum HOM05D003888 ORTHO05D007163 4.7e-14 82.8 52 82.7
Solyc05g025770.1 Solanum lycopersicum HOM05D003888 ORTHO05D007163 6.1e-14 82.4 88 50.0
PGSC0003DMG400044443 Solanum tuberosum HOM05D003888 ORTHO05D007163 6.1e-14 82.4 62 67.7
AUR62037959 Chenopodium quinoa HOM05D000107 ORTHO05D009597 1.8e-13 80.9 171 31.6
CAN.G1055.6 Capsicum annuum HOM05D003888 ORTHO05D007163 3.0e-13 80.1 61 67.2
Peaxi162Scf00107g00021 Petunia axillaris HOM05D008541 ORTHO05D010458 6.8e-13 79.0 152 32.9
CAN.G634.4 Capsicum annuum HOM05D003888 ORTHO05D007163 2.6e-12 77.0 67 62.7
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 4.4e-12 76.3 161 29.8
Sc07g0005550 Simmondsia chinensis HOM05D010546 ORTHO05D013352 4.4e-12 76.3 256 26.2
EL10Ac3g06998 Beta vulgaris HOM05D000107 ORTHO05D000062 1.7e-11 74.3 211 23.7
Nitab4.5_0014285g0010 Nicotiana tabacum HOM05D009290 ORTHO05D009597 1.7e-11 74.3 246 24.0
Peaxi162Scf00272g00044 Petunia axillaris HOM05D003888 ORTHO05D007163 1.7e-11 74.3 173 33.5
Solyc07g017903.1 Solanum lycopersicum HOM05D003888 ORTHO05D007163 1.7e-11 74.3 79 48.1
Hund10867 Selenicereus undatus HOM05D009146 ORTHO05D011649 2.2e-11 73.9 75 45.3
AUR62037945 Chenopodium quinoa HOM05D008455 ORTHO05D009597 3.7e-11 73.2 248 26.6
CAN.G133.3 Capsicum annuum HOM05D003888 ORTHO05D007163 4.9e-11 72.8 62 59.7
CAN.G176.21 Capsicum annuum HOM05D003888 ORTHO05D007163 4.9e-11 72.8 67 58.2
EL10Ac3g06519 Beta vulgaris HOM05D008455 ORTHO05D009597 8.3e-11 72.0 145 27.6
PGSC0003DMG400005234 Solanum tuberosum HOM05D003888 ORTHO05D007163 8.3e-11 72.0 67 50.7
Solyc09g057900.3 Solanum lycopersicum HOM05D003888 ORTHO05D007163 2.4e-10 70.5 51 56.9
Sopen07g007210 Solanum pennellii HOM05D003888 ORTHO05D007163 2.4e-10 70.5 81 42.0
CAN.G59.26 Capsicum annuum HOM05D003888 ORTHO05D007163 4.1e-10 69.7 62 62.9
CAN.G563.1 Capsicum annuum HOM05D003888 ORTHO05D007163 7.0e-10 68.9 67 53.7
Sc08g0006140 Simmondsia chinensis HOM05D010546 ORTHO05D013352 7.0e-10 68.9 100 37.0
AUR62037081 Chenopodium quinoa HOM05D008455 ORTHO05D009597 9.2e-10 68.6 150 30.7
AUR62039309 Chenopodium quinoa HOM05D008455 ORTHO05D009597 1.2e-09 68.2 134 31.3
Prupe.1G578800 Prunus persica HOM05D005763 ORTHO05D005970 2.0e-09 67.4 283 24.7
AUR62031247 Chenopodium quinoa HOM05D008455 ORTHO05D009597 2.7e-09 67.0 152 30.9
EL10Ac7g17511 Beta vulgaris HOM05D000107 ORTHO05D000062 3.5e-09 66.6 91 41.8
Peaxi162Scf00529g00022 Petunia axillaris HOM05D003888 ORTHO05D007163 3.5e-09 66.6 61 47.5
Ah.06g194520 Amaranthus hybridus HOM05D000711 ORTHO05D000545 4.5e-09 66.2 139 27.3
EL10Ac6g14504 Beta vulgaris HOM05D000107 ORTHO05D007163 4.5e-09 66.2 197 22.3
PGSC0003DMG400015985 Solanum tuberosum HOM05D003888 ORTHO05D007163 4.5e-09 66.2 137 31.4
Nitab4.5_0005770g0030 Nicotiana tabacum HOM05D009290 ORTHO05D009597 5.9e-09 65.9 144 30.6
PGSC0003DMG400017141 Solanum tuberosum HOM05D003888 ORTHO05D007163 1.0e-08 65.1 76 44.7
Peaxi162Scf00033g00005 Petunia axillaris HOM05D003888 ORTHO05D007163 1.3e-08 64.7 89 42.7
Solyc10g052810.1 Solanum lycopersicum HOM05D003888 ORTHO05D007163 1.3e-08 64.7 54 57.4
Prupe.7G105300 Prunus persica HOM05D005763 ORTHO05D005970 5.0e-08 62.8 282 23.0
MD09G1027200 Malus domestica HOM05D005763 ORTHO05D005970 6.6e-08 62.4 284 24.6
Nitab4.5_0022706g0010 Nicotiana tabacum HOM05D009290 ORTHO05D009597 6.6e-08 62.4 217 26.3
AUR62037452 Chenopodium quinoa HOM05D000039 ORTHO05D007163 8.6e-08 62.0 175 26.9
PGSC0003DMG400037215 Solanum tuberosum HOM05D003888 ORTHO05D007163 1.1e-07 61.6 61 41.0
Hund08561 Selenicereus undatus HOM05D008455 ORTHO05D009597 1.5e-07 61.2 181 26.5
EL10Ac3g06642 Beta vulgaris HOM05D000107 ORTHO05D000062 1.9e-07 60.8 84 39.3
Nitab4.5_0000037g0270 Nicotiana tabacum HOM05D008541 ORTHO05D010458 1.9e-07 60.8 91 40.7
Nitab4.5_0000970g0140 Nicotiana tabacum HOM05D008541 ORTHO05D010458 1.9e-07 60.8 75 44.0
PGSC0003DMG400044246 Solanum tuberosum HOM05D003888 ORTHO05D007163 5.6e-07 59.3 245 23.7
AUR62041429 Chenopodium quinoa HOM05D000107 ORTHO05D000062 1.2e-06 58.2 147 29.9
Peaxi162Scf00158g00046 Petunia axillaris HOM05D003888 ORTHO05D007163 1.2e-06 58.2 61 45.9
Sc03g0005860 Simmondsia chinensis HOM05D010546 ORTHO05D013352 1.2e-06 58.2 76 38.2
Sopen08g014600 Solanum pennellii HOM05D003888 ORTHO05D007163 1.2e-06 58.2 100 32.0
Hund15433 Selenicereus undatus HOM05D008455 ORTHO05D009597 1.6e-06 57.8 147 26.5
EL10Ac8g19587 Beta vulgaris HOM05D003888 ORTHO05D007163 2.1e-06 57.4 169 23.7
PGR044G2317 Punica granatum HOM05D001309 ORTHO05D000385 2.8e-06 57.0 246 23.2
Sc07g0004880 Simmondsia chinensis HOM05D010546 ORTHO05D013352 4.7e-06 56.2 85 36.5
FvH4_3g22812 Fragaria vesca HOM05D023520 ORTHO05D025365 6.1e-06 55.8 201 20.9
Sc02g0005550 Simmondsia chinensis HOM05D003888 ORTHO05D011649 6.1e-06 55.8 95 31.6
Solyc01g014050.1 Solanum lycopersicum HOM05D003888 ORTHO05D007163 8.0e-06 55.5 45 51.1


User provided reference genes

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