Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g051200.2 Solanum lycopersicum HOM05D005713 ORTHO05D007751 0.0e+00 1106.7 562 100.0
Sopen10g022910 Solanum pennellii HOM05D005713 ORTHO05D007751 0.0e+00 1098.2 562 98.9
PGSC0003DMG400005550 Solanum tuberosum HOM05D005713 ORTHO05D007751 1.9e-311 1071.6 562 96.8
CAN.G1.51 Capsicum annuum HOM05D005713 ORTHO05D007751 3.6e-284 981.1 563 88.5
Nitab4.5_0001361g0160 Nicotiana tabacum HOM05D005713 ORTHO05D007751 8.5e-278 959.9 567 87.3
Nitab4.5_0005152g0070 Nicotiana tabacum HOM05D005713 ORTHO05D007751 8.0e-268 926.8 566 85.0
Peaxi162Scf00003g01334 Petunia axillaris HOM05D005713 ORTHO05D007751 1.3e-265 919.5 555 84.7
CiPaw.06G137900 Carya illinoinensis HOM05D005713 ORTHO05D007751 3.6e-228 795.0 550 72.5
Oeu021892.1 Olea europaea HOM05D005713 ORTHO05D007751 2.6e-226 788.9 521 75.0
TAR381G0424 Trochodendron aralioides HOM05D005713 ORTHO05D007751 2.2e-225 785.8 561 71.5
GSVIVG01031911001 Vitis vinifera HOM05D005713 ORTHO05D007751 2.9e-225 785.4 565 72.2
Manes.15G148000 Manihot esculenta HOM05D005713 ORTHO05D007751 1.9e-224 782.7 533 75.2
Gohir.A03G180100 Gossypium hirsutum HOM05D005713 ORTHO05D007751 2.4e-224 782.3 519 75.1
Ciclev10028141m.g Citrus clementina HOM05D005713 ORTHO05D007751 4.2e-224 781.6 522 74.7
Gorai.005G229000 Gossypium raimondii HOM05D005713 ORTHO05D007751 4.2e-224 781.6 562 71.5
CSS0002132 Camellia sinensis var. sinensis HOM05D005713 ORTHO05D007751 5.4e-224 781.2 561 72.0
CANSAT25G3337 Cannabis sativa HOM05D005713 ORTHO05D007751 5.4e-224 781.2 514 75.7
Cc02_g17920 Coffea canephora HOM05D005713 ORTHO05D007751 5.4e-224 781.2 559 70.7
Duzib052G0462 Durio zibethinus HOM05D005713 ORTHO05D007751 5.4e-224 781.2 521 74.7
Gohir.D02G203009 Gossypium hirsutum HOM05D005713 ORTHO05D007751 7.1e-224 780.8 562 71.2
QL11p042284 Quercus lobata HOM05D005713 ORTHO05D007751 2.7e-223 778.9 569 71.0
COL.COLO4_32466 Corchorus olitorius HOM05D005713 ORTHO05D007751 3.5e-223 778.5 563 70.3
Thecc.02G121600 Theobroma cacao HOM05D005713 ORTHO05D007751 1.7e-222 776.2 546 71.4
Nn1g05118 Nelumbo nucifera HOM05D005713 ORTHO05D007751 5.1e-222 774.6 550 72.4
Duzib132G0001 Durio zibethinus HOM05D005713 ORTHO05D007751 6.6e-222 774.2 521 73.1
Hma1.2p1_0066F.1_g036800 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 1.1e-221 773.5 507 74.6
Atru.chr5.2933 Acer truncatum HOM05D005713 ORTHO05D007751 6.2e-220 767.7 548 71.5
Prupe.8G105700 Prunus persica HOM05D005713 ORTHO05D007751 6.2e-220 767.7 547 70.4
Glyma.11G120800 Glycine max HOM05D005713 ORTHO05D007751 1.8e-219 766.1 521 72.9
Lj3g0005966 Lotus japonicus HOM05D005713 ORTHO05D007751 2.4e-219 765.8 529 71.8
arahy.Tifrunner.gnm1.ann1.A5JIR8 Arachis hypogaea HOM05D005713 ORTHO05D007751 4.0e-219 765.0 519 74.6
Eucgr.G00476 Eucalyptus grandis HOM05D005713 ORTHO05D007751 4.0e-219 765.0 534 71.5
Potri.009G111692 Populus trichocarpa HOM05D005713 ORTHO05D007751 9.0e-219 763.8 551 70.6
Potri.T124704 Populus trichocarpa HOM05D005713 ORTHO05D007751 2.0e-218 762.7 551 70.8
arahy.Tifrunner.gnm1.ann1.6A0IVA Arachis hypogaea HOM05D005713 ORTHO05D007751 2.6e-218 762.3 519 74.0
Sabra09G0085300 Salix brachista HOM05D005713 ORTHO05D007751 2.6e-218 762.3 559 70.5
MSTRG.20107 Avicennia marina HOM05D005713 ORTHO05D007751 4.5e-218 761.5 538 70.4
EL10Ac9g21763 Beta vulgaris HOM05D005713 ORTHO05D007751 5.8e-218 761.1 534 71.9
Ca_20845_v3 Cicer arietinum L. HOM05D005713 ORTHO05D007751 1.3e-217 760.0 547 70.6
DCAR_022094 Daucus carota HOM05D005713 ORTHO05D007751 3.8e-217 758.4 566 69.4
Sp1g36220 Schrenkiella parvula HOM05D005713 ORTHO05D007751 4.9e-217 758.1 523 72.3
AL1G56340 Arabidopsis lyrata HOM05D005713 ORTHO05D007751 6.4e-217 757.7 538 70.4
MD05G1072000 Malus domestica HOM05D005713 ORTHO05D007751 6.4e-217 757.7 557 69.3
Lalb_Chr01g0002751 Lupinus albus HOM05D005713 ORTHO05D007751 1.1e-216 756.9 530 71.7
AT1G49380 Arabidopsis thaliana HOM05D005713 ORTHO05D007751 1.4e-216 756.5 540 70.2
Medtr4g069080 Medicago truncatula HOM05D005713 ORTHO05D007751 1.9e-216 756.1 516 71.9
Thhalv10011363m.g Eutrema salsugineum HOM05D005713 ORTHO05D007751 7.1e-216 754.2 528 71.6
TPR.G28056 Trifolium pratense HOM05D005713 ORTHO05D007751 7.1e-216 754.2 514 72.0
VMungo1127G1847 Vigna mungo HOM05D005713 ORTHO05D007751 1.2e-215 753.4 523 71.3
Lalb_Chr03g0025831 Lupinus albus HOM05D005713 ORTHO05D007751 7.9e-215 750.7 529 71.1
SalBow6G0484 Salvia bowleyana HOM05D005713 ORTHO05D007751 1.0e-214 750.4 454 79.3
RcHm_v2.0_Chr6g0262411 Rosa chinensis HOM05D005713 ORTHO05D007751 2.3e-214 749.2 552 69.0
Rhsim05G0076900 Rhododendron simsii HOM05D005713 ORTHO05D007751 3.9e-214 748.4 565 67.6
Lsat_1_v5_gn_5_173381 Lactuca sativa HOM05D005713 ORTHO05D007751 6.7e-214 747.7 538 70.4
Phvul.011G047800 Phaseolus vulgaris HOM05D005713 ORTHO05D007751 8.7e-214 747.3 537 69.5
BcaB04g17346 Brassica carinata HOM05D005713 ORTHO05D007751 1.5e-213 746.5 512 72.3
THA.LOC104800072 Tarenaya hassleriana HOM05D005713 ORTHO05D007751 1.5e-213 746.5 512 72.9
Migut.B00270 Erythranthe guttata HOM05D005713 ORTHO05D007751 1.9e-213 746.1 529 70.3
A08p04030 Brassica napus HOM05D005713 ORTHO05D007751 5.6e-213 744.6 508 72.8
PGR042G3676 Punica granatum HOM05D005713 ORTHO05D007751 1.3e-212 743.4 553 68.5
Lj5C201T4 Lonicera japonica HOM05D005713 ORTHO05D007751 1.6e-212 743.0 554 70.2
BcaC07g37058 Brassica carinata HOM05D005713 ORTHO05D007751 2.1e-212 742.7 510 72.2
CsaV3_7G010230 Cucumis sativus L. HOM05D005713 ORTHO05D007751 2.1e-212 742.7 544 68.4
Aqoxy5G01712 Aquilegia oxysepala HOM05D005713 ORTHO05D007751 4.8e-212 741.5 519 72.4
CARHR039390 Cardamine hirsuta HOM05D005713 ORTHO05D007751 6.2e-212 741.1 544 68.9
HanXRQChr01g0011551 Helianthus annuus HOM05D005713 ORTHO05D007751 6.2e-212 741.1 535 70.7
PSO700G0051 Papaver somniferum HOM05D005713 ORTHO05D007751 8.1e-212 740.7 521 72.2
BolC8t47226H Brassica oleracea HOM05D005713 ORTHO05D007751 1.1e-211 740.3 510 72.0
ClCG02G005320 Citrullus lanatus HOM05D005713 ORTHO05D007751 1.1e-211 740.3 543 68.7
C08p04230 Brassica napus HOM05D005713 ORTHO05D007751 1.8e-211 739.6 510 72.0
Psat7g185160 Pisum sativum HOM05D005713 ORTHO05D007751 2.4e-211 739.2 514 71.6
BraA08t32431Z Brassica rapa HOM05D005713 ORTHO05D007751 3.1e-211 738.8 507 72.2
MD10G1082600 Malus domestica HOM05D005713 ORTHO05D007751 5.3e-211 738.0 519 71.9
Cpa.g.sc62.105 Carica papaya HOM05D005713 ORTHO05D007751 6.9e-211 737.6 524 72.5
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 9.0e-211 737.3 536 69.8
FvH4_2g07950 Fragaria vesca HOM05D005713 ORTHO05D007751 1.2e-210 736.9 546 68.1
PSO170G4048 Papaver somniferum HOM05D005713 ORTHO05D007751 1.0e-209 733.8 521 72.0
ECA248G1707 Erigeron canadensis HOM05D005713 ORTHO05D007751 4.2e-208 728.4 484 75.0
CDE02G0286 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 1.0e-206 723.8 510 71.2
ATR0733G225 Amborella trichopoda HOM05D005713 ORTHO05D007751 1.8e-206 723.0 445 78.4
Dinv23558 Davidia involucrata HOM05D005713 ORTHO05D007751 5.1e-206 721.5 515 71.3
FAN24G3015 Fragaria x ananassa HOM05D005713 ORTHO05D007751 5.1e-206 721.5 560 66.2
Sed0025253 Sechium edule HOM05D005713 ORTHO05D007751 4.3e-205 718.4 480 73.5
SGA_v2.0_scaffold58G20572 Striga asiatica HOM05D005713 ORTHO05D007751 2.1e-204 716.1 454 76.7
MELO3C018406.2 Cucumis melo HOM05D005713 ORTHO05D007751 3.1e-203 712.2 553 66.7
AUR62011361 Chenopodium quinoa HOM05D005713 ORTHO05D007751 4.1e-203 711.8 507 71.2
Carub.0001s3855 Capsella rubella HOM05D005713 ORTHO05D007751 6.9e-203 711.1 424 79.5
vmacro19441 Vaccinium macrocarpon HOM05D005713 ORTHO05D007751 2.2e-201 706.1 613 61.3
Os03g0769600 Oryza sativa ssp. japonica HOM05D005713 ORTHO05D007751 5.0e-201 704.9 443 77.0
Hund06219 Selenicereus undatus HOM05D005713 ORTHO05D007751 1.4e-200 703.4 424 80.0
AUR62016700 Chenopodium quinoa HOM05D005713 ORTHO05D007751 1.9e-200 703.0 517 69.4
FAN15G0466 Fragaria x ananassa HOM05D005713 ORTHO05D007751 5.5e-200 701.4 560 64.8
Zm00001eb058790 Zea mays HOM05D005713 ORTHO05D007751 9.3e-200 700.7 462 73.8
unitig_0.g67 Utricularia gibba HOM05D005713 ORTHO05D007751 2.7e-199 699.1 562 63.0
HPP92_018386 Vanilla planifolia HOM05D005713 ORTHO05D007751 2.5e-197 692.6 475 72.0
MBI16_g10988_MAGBIO Magnolia biondii HOM05D005713 ORTHO05D007751 1.1e-195 687.2 555 65.4
Haze_02421 Corylus avellana HOM05D005713 ORTHO05D007751 1.7e-180 636.7 547 63.4
Hma1.2p1_0066F.1_g036810 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 2.0e-178 629.8 375 81.1
SEGI_30892 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 2.9e-177 625.9 513 61.8
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 3.8e-177 625.5 419 73.5
Actinidia17829 Actinidia chinensis HOM05D005713 ORTHO05D007751 7.7e-162 574.7 386 76.4
Mapoly0160s0024 Marchantia polymorpha HOM05D005713 ORTHO05D007751 2.9e-153 546.2 451 59.6
Pp3c5_6360 Physcomitrium patens HOM05D005713 ORTHO05D007751 1.5e-152 543.9 508 55.1
Sc18g0004720 Simmondsia chinensis HOM05D005713 ORTHO05D007751 3.7e-148 529.3 424 64.6
SMO172G0143 Selaginella moellendorffii HOM05D005713 ORTHO05D007751 1.6e-146 523.9 438 59.4
CDE01G0298 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 1.9e-144 516.9 388 68.0
CBR_g46847 Chara braunii HOM05D005713 ORTHO05D007751 9.5e-136 488.0 440 55.5
CAN.G322.106 Capsicum annuum HOM05D005713 ORTHO05D007751 2.2e-132 476.9 562 52.0
PGSC0003DMG400025182 Solanum tuberosum HOM05D005713 ORTHO05D007751 3.3e-128 463.0 563 51.3
Solyc01g109330.3 Solanum lycopersicum HOM05D005713 ORTHO05D007751 3.7e-124 449.5 564 49.6
Peaxi162Scf00016g00106 Petunia axillaris HOM05D005713 ORTHO05D007751 5.4e-123 445.7 540 51.3
Nitab4.5_0004280g0110 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.6e-122 444.1 545 51.6
Nitab4.5_0004287g0050 Nicotiana tabacum HOM05D005713 ORTHO05D007751 4.9e-116 422.5 537 50.5
AagrBONN_evm.TU.Sc2ySwM_228.2211 Anthoceros agrestis HOM05D005713 ORTHO05D007751 4.6e-114 416.0 476 47.7
Sopen01g051520 Solanum pennellii HOM05D005713 ORTHO05D007751 7.8e-114 415.2 452 53.3
Cre13.g575000 Chlamydomonas reinhardtii HOM05D005713 ORTHO05D007751 3.4e-109 399.8 480 47.3
MCO11G018 Micromonas commoda HOM05D005713 ORTHO05D007751 3.3e-104 383.3 477 44.7
TAR381G0857 Trochodendron aralioides HOM05D005713 ORTHO05D007751 2.8e-103 380.2 255 74.5
QL07p047677 Quercus lobata HOM05D005713 ORTHO05D007751 7.4e-80 302.4 177 82.5
PRCOL_00003752 Prasinoderma coloniale HOM05D005713 ORTHO05D007751 9.7e-80 302.0 481 39.1
Glyma.12G045850 Glycine max HOM05D005713 ORTHO05D007751 1.4e-70 271.6 169 77.5
PGSC0003DMG400003326 Solanum tuberosum HOM05D005713 ORTHO05D021118 3.7e-55 220.3 132 84.8
PGSC0003DMG400019020 Solanum tuberosum HOM05D005713 ORTHO05D021118 8.5e-52 209.1 132 80.3
QL07p047674 Quercus lobata HOM05D005713 ORTHO05D021118 2.8e-47 194.1 217 55.3
Glyma.12G045901 Glycine max HOM05D005713 ORTHO05D007751 7.0e-46 189.5 162 61.7
AUR62026246 Chenopodium quinoa HOM05D005713 ORTHO05D138102 1.4e-38 165.2 139 61.9
FAN19G2312 Fragaria x ananassa HOM05D005713 ORTHO05D007751 4.7e-34 150.2 131 58.8
Actinidia27913 Actinidia chinensis HOM05D005713 ORTHO05D007751 7.5e-32 142.9 85 81.2
Lj5g0025918 Lotus japonicus HOM05D005713 ORTHO05D236034 4.6e-29 133.7 105 61.9
SEGI_20066 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 1.5e-24 118.6 125 46.4
FvH4_1g29190 Fragaria vesca HOM05D005713 ORTHO05D007751 1.5e-19 102.1 104 54.8
FAN20G0809 Fragaria x ananassa HOM05D005713 ORTHO05D007751 2.6e-16 91.3 58 72.4
Sopen04g004520 Solanum pennellii HOM05D001773 ORTHO05D001710 1.9e-14 85.1 70 64.3
Hma1.2p1_0066F.1_g036790 Hydrangea macrophylla HOM05D005713 ORTHO05D021118 7.3e-11 73.2 96 44.8
Actinidia27912 Actinidia chinensis HOM05D005713 ORTHO05D021118 1.8e-09 68.6 131 42.0
QL11p041469 Quercus lobata HOM05D005713 ORTHO05D338114 2.9e-07 61.2 38 73.7
Sopen01g006830 Solanum pennellii HOM05D001773 ORTHO05D001710 3.2e-06 57.8 37 73.0


User provided reference genes

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