Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g050960.3 Solanum lycopersicum HOM05D000245 ORTHO05D000020 1.0e-48 196.4 98 100.0
Solyc10g050970.1 Solanum lycopersicum HOM05D000245 ORTHO05D000020 9.4e-31 136.7 111 68.5
Sopen10g022610 Solanum pennellii HOM05D000245 ORTHO05D000020 3.3e-28 128.3 111 66.7
Nitab4.5_0001361g0010 Nicotiana tabacum HOM05D000245 ORTHO05D000020 8.2e-19 97.1 133 47.4
PGSC0003DMG400008263 Solanum tuberosum HOM05D000245 ORTHO05D000020 3.1e-18 95.1 120 50.0
Peaxi162Scf00003g01526 Petunia axillaris HOM05D000245 ORTHO05D000020 4.1e-18 94.7 131 45.8
Nitab4.5_0000876g0060 Nicotiana tabacum HOM05D000245 ORTHO05D000020 4.2e-15 84.7 131 43.5
Nitab4.5_0000876g0070 Nicotiana tabacum HOM05D000245 ORTHO05D000020 9.4e-15 83.6 134 43.3
CAN.G332.7 Capsicum annuum HOM05D000245 ORTHO05D000020 8.0e-14 80.5 135 41.5
Rhsim05G0084300 Rhododendron simsii HOM05D000245 ORTHO05D000020 1.8e-13 79.3 67 58.2
Nitab4.5_0000876g0080 Nicotiana tabacum HOM05D000245 ORTHO05D000020 3.0e-13 78.6 131 40.5
Nitab4.5_0001361g0060 Nicotiana tabacum HOM05D000245 ORTHO05D000020 5.2e-13 77.8 133 40.6
Rhsim05G0084400 Rhododendron simsii HOM05D000245 ORTHO05D000020 5.2e-13 77.8 67 56.7
ClCG05G009970 Citrullus lanatus HOM05D000245 ORTHO05D000020 9.8e-12 73.6 89 47.2
FAN15G0061 Fragaria x ananassa HOM05D000245 ORTHO05D000020 9.8e-12 73.6 54 61.1
Dinv23620 Davidia involucrata HOM05D000245 ORTHO05D000020 1.3e-11 73.2 60 56.7
CSS0013312 Camellia sinensis var. sinensis HOM05D000245 ORTHO05D000020 1.7e-11 72.8 67 56.7
CSS0014363 Camellia sinensis var. sinensis HOM05D000245 ORTHO05D000020 1.7e-11 72.8 67 56.7
PGSC0003DMG400008264 Solanum tuberosum HOM05D000245 ORTHO05D000020 1.7e-11 72.8 47 76.6
ECA240G2831 Erigeron canadensis HOM05D000245 ORTHO05D000020 2.2e-11 72.4 58 62.1
Peaxi162Scf00152g00009 Petunia axillaris HOM05D000245 ORTHO05D000020 2.8e-11 72.0 78 50.0
Actinidia00441 Actinidia chinensis HOM05D000245 ORTHO05D000020 4.8e-11 71.2 107 40.2
Hma1.2p1_1849F.1_g305320 Hydrangea macrophylla HOM05D000245 ORTHO05D000020 4.8e-11 71.2 65 55.4
CsaV3_3G018600 Cucumis sativus L. HOM05D000245 ORTHO05D000020 6.3e-11 70.9 97 43.3
Lsat_1_v5_gn_9_110040 Lactuca sativa HOM05D000245 ORTHO05D000020 6.3e-11 70.9 64 56.2
Rhsim11G0165600 Rhododendron simsii HOM05D000245 ORTHO05D000020 6.3e-11 70.9 62 56.5
ClCG02G005910 Citrullus lanatus HOM05D000245 ORTHO05D000020 8.3e-11 70.5 54 59.3
HanXRQChr09g0250411 Helianthus annuus HOM05D000245 ORTHO05D000020 8.3e-11 70.5 64 54.7
CANSAT01G2131 Cannabis sativa HOM05D000245 ORTHO05D000020 1.1e-10 70.1 72 48.6
MELO3C019506.2 Cucumis melo HOM05D000245 ORTHO05D000020 1.1e-10 70.1 67 55.2
DCAR_007860 Daucus carota HOM05D000245 ORTHO05D000020 1.1e-10 70.1 95 44.2
MSTRG.16745 Avicennia marina HOM05D000245 ORTHO05D000020 1.8e-10 69.3 59 52.5
HanXRQChr03g0071951 Helianthus annuus HOM05D000245 ORTHO05D000020 1.8e-10 69.3 74 48.6
Oeu013711.1 Olea europaea HOM05D000245 ORTHO05D000020 3.1e-10 68.6 64 56.2
Haze_10078 Corylus avellana HOM05D000245 ORTHO05D000020 5.4e-10 67.8 60 56.7
Duzib052G0744 Durio zibethinus HOM05D000245 ORTHO05D000020 5.4e-10 67.8 69 53.6
FvH4_2g06050 Fragaria vesca HOM05D000245 ORTHO05D000020 7.0e-10 67.4 54 59.3
FAN24G1430 Fragaria x ananassa HOM05D000245 ORTHO05D000020 7.0e-10 67.4 54 59.3
FAN27G2008 Fragaria x ananassa HOM05D000245 ORTHO05D000020 7.0e-10 67.4 54 59.3
SGA_v2.0_scaffold90G27657 Striga asiatica HOM05D000245 ORTHO05D000020 7.0e-10 67.4 59 55.9
Lj9A358G41 Lonicera japonica HOM05D000245 ORTHO05D000020 9.1e-10 67.0 116 35.3
Oeu007288.1 Olea europaea HOM05D000245 ORTHO05D000020 9.1e-10 67.0 67 52.2
Sed0026144 Sechium edule HOM05D000245 ORTHO05D000020 9.1e-10 67.0 55 58.2
MSTRG.20155 Avicennia marina HOM05D000245 ORTHO05D000020 1.2e-09 66.6 88 43.2
Gohir.A13G040200 Gossypium hirsutum HOM05D000245 ORTHO05D000020 1.2e-09 66.6 67 49.3
PSO541G5599 Papaver somniferum HOM05D000245 ORTHO05D000020 1.2e-09 66.6 57 54.4
PSO675G2858 Papaver somniferum HOM05D000245 ORTHO05D000020 1.2e-09 66.6 57 54.4
Cpa.g.sc62.11 Carica papaya HOM05D000245 ORTHO05D000020 1.6e-09 66.2 58 62.1
DCAR_029052 Daucus carota HOM05D000245 ORTHO05D000020 1.6e-09 66.2 59 55.9
HanXRQChr16g0501311 Helianthus annuus HOM05D000245 ORTHO05D000020 1.6e-09 66.2 86 40.7
Sed0025007 Sechium edule HOM05D000245 ORTHO05D000020 1.6e-09 66.2 64 53.1
TWI31G0072 Tripterygium wilfordii HOM05D000245 ORTHO05D000020 1.6e-09 66.2 54 61.1
Actinidia16494 Actinidia chinensis HOM05D000245 ORTHO05D000020 2.0e-09 65.9 68 52.9
MD10G1094700 Malus domestica HOM05D000245 ORTHO05D000020 2.0e-09 65.9 89 43.8
Gohir.D12G024800 Gossypium hirsutum HOM05D000245 ORTHO05D000020 2.7e-09 65.5 72 47.2
Manes.10G056300 Manihot esculenta HOM05D000245 ORTHO05D000020 2.7e-09 65.5 54 59.3
Medtr4g086160 Medicago truncatula HOM05D000245 ORTHO05D000020 2.7e-09 65.5 74 48.6
TWI79G1533 Tripterygium wilfordii HOM05D000245 ORTHO05D000020 2.7e-09 65.5 59 54.2
FAN20G0843 Fragaria x ananassa HOM05D000245 ORTHO05D000020 3.5e-09 65.1 54 57.4
Lsat_1_v5_gn_4_166720 Lactuca sativa HOM05D000245 ORTHO05D000020 3.5e-09 65.1 87 41.4
PGR042G0553 Punica granatum HOM05D000245 ORTHO05D000020 3.5e-09 65.1 66 51.5
TAR381G0413 Trochodendron aralioides HOM05D000245 ORTHO05D000020 3.5e-09 65.1 91 48.4
Haze_10079 Corylus avellana HOM05D000245 ORTHO05D000020 4.5e-09 64.7 61 52.5
Nitab4.5_0000435g0080 Nicotiana tabacum HOM05D000245 ORTHO05D000020 5.9e-09 64.3 77 46.8
Nitab4.5_0004666g0020 Nicotiana tabacum HOM05D000245 ORTHO05D000020 5.9e-09 64.3 78 46.2
Gohir.A12G024200 Gossypium hirsutum HOM05D000245 ORTHO05D000020 7.7e-09 63.9 72 48.6
Gohir.D02G210000 Gossypium hirsutum HOM05D000245 ORTHO05D000020 7.7e-09 63.9 63 54.0
Gorai.005G238000 Gossypium raimondii HOM05D000245 ORTHO05D000020 7.7e-09 63.9 63 54.0
RcHm_v2.0_Chr6g0257181 Rosa chinensis HOM05D000245 ORTHO05D000020 7.7e-09 63.9 69 52.2
CiPaw.06G172500 Carya illinoinensis HOM05D000245 ORTHO05D000020 1.0e-08 63.5 119 38.7
Dinv29982 Davidia involucrata HOM05D000245 ORTHO05D000020 1.0e-08 63.5 54 53.7
Gohir.A03G189400 Gossypium hirsutum HOM05D000245 ORTHO05D000020 1.0e-08 63.5 63 54.0
Lj9C358T5 Lonicera japonica HOM05D000245 ORTHO05D000020 1.0e-08 63.5 71 49.3
Potri.004G141200 Populus trichocarpa HOM05D000245 ORTHO05D000020 1.0e-08 63.5 54 61.1
Potri.009G101900 Populus trichocarpa HOM05D000245 ORTHO05D000020 1.0e-08 63.5 54 61.1
Sabra09G0077900 Salix brachista HOM05D000245 ORTHO05D000020 1.0e-08 63.5 54 61.1
Thecc.02G100800 Theobroma cacao HOM05D000245 ORTHO05D000020 1.0e-08 63.5 63 54.0
TWI73G0426 Tripterygium wilfordii HOM05D000245 ORTHO05D000020 1.0e-08 63.5 67 46.3
CSS0047404 Camellia sinensis var. sinensis HOM05D000245 ORTHO05D000020 1.3e-08 63.2 64 51.6
Gorai.008G025100 Gossypium raimondii HOM05D000245 ORTHO05D000020 1.3e-08 63.2 72 47.2
Prupe.8G125100 Prunus persica HOM05D000245 ORTHO05D000020 1.3e-08 63.2 54 59.3
Eucgr.H01659 Eucalyptus grandis HOM05D000245 ORTHO05D000020 1.7e-08 62.8 84 42.9
Lsat_1_v5_gn_4_166640 Lactuca sativa HOM05D000245 ORTHO05D000020 1.7e-08 62.8 62 51.6
Nitab4.5_0002097g0010 Nicotiana tabacum HOM05D000245 ORTHO05D000020 1.7e-08 62.8 79 45.6
Psat7g124720 Pisum sativum HOM05D000245 ORTHO05D000020 1.7e-08 62.8 77 49.4
Duzib132G0581 Durio zibethinus HOM05D000245 ORTHO05D000020 2.2e-08 62.4 56 57.1
Sabra04G0093000 Salix brachista HOM05D000245 ORTHO05D000020 2.2e-08 62.4 54 55.6
CDE10G0714 Ceratophyllum demersum HOM05D000245 ORTHO05D000020 2.9e-08 62.0 83 48.2
CsaV3_7G008630 Cucumis sativus L. HOM05D000245 ORTHO05D000020 2.9e-08 62.0 58 51.7
Eucgr.I01153 Eucalyptus grandis HOM05D000245 ORTHO05D000020 2.9e-08 62.0 65 49.2
FAN15G2684 Fragaria x ananassa HOM05D000245 ORTHO05D000020 2.9e-08 62.0 54 57.4
Gohir.D13G038900 Gossypium hirsutum HOM05D000245 ORTHO05D000020 2.9e-08 62.0 62 50.0
Gorai.013G043700 Gossypium raimondii HOM05D000245 ORTHO05D000020 2.9e-08 62.0 62 50.0
Peaxi162Scf00016g00183 Petunia axillaris HOM05D000245 ORTHO05D000020 2.9e-08 62.0 64 50.0
TPR.G25437 Trifolium pratense HOM05D000245 ORTHO05D000020 2.9e-08 62.0 59 55.9
unitig_744.g24237 Utricularia gibba HOM05D000245 ORTHO05D000020 2.9e-08 62.0 54 57.4
Dinv39856 Davidia involucrata HOM05D000245 ORTHO05D000020 3.8e-08 61.6 54 55.6
Rhsim08G0100800 Rhododendron simsii HOM05D000227 ORTHO05D004725 3.8e-08 61.6 65 49.2
SGA_v2.0_scaffold32G13066 Striga asiatica HOM05D000245 ORTHO05D000020 5.0e-08 61.2 54 57.4
HPP92_016721 Vanilla planifolia HOM05D000245 ORTHO05D000020 5.0e-08 61.2 54 53.7
Cfa004013 Carpinus fangiana HOM05D000245 ORTHO05D000020 6.5e-08 60.8 53 56.6
ECA234G2764 Erigeron canadensis HOM05D000245 ORTHO05D000020 6.5e-08 60.8 59 50.8
FvH4_2g06060 Fragaria vesca HOM05D000245 ORTHO05D000020 6.5e-08 60.8 54 57.4
Nn1g04860 Nelumbo nucifera HOM05D000245 ORTHO05D000020 6.5e-08 60.8 61 50.8
Prupe.7G134100 Prunus persica HOM05D000245 ORTHO05D000020 6.5e-08 60.8 60 50.0
Ca_18684_v3 Cicer arietinum L. HOM05D000245 ORTHO05D000020 8.5e-08 60.5 59 54.2
Dinv42157 Davidia involucrata HOM05D000245 ORTHO05D000020 8.5e-08 60.5 60 50.0
Medtr4g086190 Medicago truncatula HOM05D000245 ORTHO05D000020 8.5e-08 60.5 54 55.6
FvH4_1g15960 Fragaria vesca HOM05D000245 ORTHO05D000020 1.1e-07 60.1 54 57.4
FAN19G1205 Fragaria x ananassa HOM05D000245 ORTHO05D000020 1.1e-07 60.1 54 57.4
Phvul.003G292400 Phaseolus vulgaris HOM05D000245 ORTHO05D000020 1.1e-07 60.1 54 59.3
PGR142G1803 Punica granatum HOM05D000245 ORTHO05D000020 1.1e-07 60.1 64 50.0
DCAR_007861 Daucus carota HOM05D000245 ORTHO05D000020 1.5e-07 59.7 62 54.8
Lalb_Chr05g0219161 Lupinus albus HOM05D000245 ORTHO05D000020 1.5e-07 59.7 54 55.6
unitig_21.g20744 Utricularia gibba HOM05D000245 ORTHO05D000020 1.5e-07 59.7 59 50.8
VMungo0251G2704 Vigna mungo HOM05D000245 ORTHO05D000020 1.5e-07 59.7 68 47.1
FAN26G3270 Fragaria x ananassa HOM05D000245 ORTHO05D000020 1.9e-07 59.3 54 55.6
Sc16g0004700 Simmondsia chinensis HOM05D000245 ORTHO05D000020 1.9e-07 59.3 61 55.7
THA.LOC104804373 Tarenaya hassleriana HOM05D000245 ORTHO05D000020 1.9e-07 59.3 95 41.1
MSTRG.27725 Avicennia marina HOM05D000245 ORTHO05D000020 2.5e-07 58.9 75 42.7
A01p04030 Brassica napus HOM05D000245 ORTHO05D000020 2.5e-07 58.9 109 34.9
BolC7t46488H Brassica oleracea HOM05D000245 ORTHO05D000020 2.5e-07 58.9 91 38.5
BraA01t00391Z Brassica rapa HOM05D000245 ORTHO05D000020 2.5e-07 58.9 109 34.9
Duzib248G0373 Durio zibethinus HOM05D000245 ORTHO05D000020 2.5e-07 58.9 54 55.6
Lj5P209T52 Lonicera japonica HOM05D000245 ORTHO05D000020 2.5e-07 58.9 71 40.8
Lj4g0002903 Lotus japonicus HOM05D000245 ORTHO05D000020 2.5e-07 58.9 54 55.6
PGR102G0683 Punica granatum HOM05D000245 ORTHO05D000020 2.5e-07 58.9 70 44.3
PGR142G0566 Punica granatum HOM05D000245 ORTHO05D000020 2.5e-07 58.9 74 45.9
Sed0018799 Sechium edule HOM05D000245 ORTHO05D000020 2.5e-07 58.9 54 51.9
Atru.chr5.2701 Acer truncatum HOM05D000245 ORTHO05D000020 3.2e-07 58.5 54 51.9
Lalb_Chr05g0219151 Lupinus albus HOM05D000245 ORTHO05D000020 3.2e-07 58.5 59 54.2
Medtr4g086220 Medicago truncatula HOM05D000245 ORTHO05D000020 3.2e-07 58.5 59 52.5
THA.LOC104807360 Tarenaya hassleriana HOM05D000245 ORTHO05D000020 3.2e-07 58.5 67 50.7
Cfa004015 Carpinus fangiana HOM05D000245 ORTHO05D000020 4.2e-07 58.2 54 53.7
Glyma.07G212400 Glycine max HOM05D000245 ORTHO05D000020 4.2e-07 58.2 54 57.4
RcHm_v2.0_Chr2g0105521 Rosa chinensis HOM05D000245 ORTHO05D000020 4.2e-07 58.2 54 51.9
MD05G1080900 Malus domestica HOM05D000245 ORTHO05D000020 5.5e-07 57.8 55 54.5
Lalb_Chr09g0328321 Lupinus albus HOM05D000245 ORTHO05D000020 7.2e-07 57.4 54 55.6
MD02G1171300 Malus domestica HOM05D000245 ORTHO05D000020 7.2e-07 57.4 61 50.8
MD15G1283200 Malus domestica HOM05D000245 ORTHO05D000020 7.2e-07 57.4 64 50.0
Manes.13G125100 Manihot esculenta HOM05D000245 ORTHO05D000020 7.2e-07 57.4 56 50.0
Nitab4.5_0005249g0050 Nicotiana tabacum HOM05D000245 ORTHO05D000020 7.2e-07 57.4 74 44.6
THA.LOC104819579 Tarenaya hassleriana HOM05D000245 ORTHO05D000020 7.2e-07 57.4 60 51.7
Aa31LG2G16320 Aethionema arabicum HOM05D000245 ORTHO05D000020 9.4e-07 57.0 67 44.8
Aqoxy6G01326 Aquilegia oxysepala HOM05D000245 ORTHO05D000020 9.4e-07 57.0 115 33.9
C07p60580 Brassica napus HOM05D000245 ORTHO05D000020 9.4e-07 57.0 91 37.4
DCAR_022022 Daucus carota HOM05D000245 ORTHO05D000020 9.4e-07 57.0 102 33.3
ECA232G4874 Erigeron canadensis HOM05D000245 ORTHO05D000020 1.2e-06 56.6 56 53.6
MBI02_g02997_MAGBIO Magnolia biondii HOM05D000245 ORTHO05D000020 1.2e-06 56.6 59 49.2
CSS0023536 Camellia sinensis var. sinensis HOM05D000245 ORTHO05D000020 1.6e-06 56.2 59 49.2
CSS0023891 Camellia sinensis var. sinensis HOM05D000245 ORTHO05D000020 1.6e-06 56.2 59 49.2
Ciclev10028930m.g Citrus clementina HOM05D000245 ORTHO05D000020 1.6e-06 56.2 83 42.2
Medtr4g086165 Medicago truncatula HOM05D000245 ORTHO05D000020 2.1e-06 55.8 59 45.8
FAN20G0248 Fragaria x ananassa HOM05D000245 ORTHO05D000020 2.7e-06 55.5 54 51.9
FAN27G3315 Fragaria x ananassa HOM05D000245 ORTHO05D000020 2.7e-06 55.5 54 51.9
THA.LOC104807359 Tarenaya hassleriana HOM05D000245 ORTHO05D000020 2.7e-06 55.5 67 44.8
TAR625G1412 Trochodendron aralioides HOM05D000245 ORTHO05D000020 2.7e-06 55.5 54 53.7
BcaNung05027 Brassica carinata HOM05D000245 ORTHO05D000020 3.6e-06 55.1 76 38.2
C01p04380 Brassica napus HOM05D000245 ORTHO05D000020 3.6e-06 55.1 76 38.2
Lalb_Chr16g0384721 Lupinus albus HOM05D000245 ORTHO05D000020 4.7e-06 54.7 59 49.2
TPR.G10249 Trifolium pratense HOM05D000245 ORTHO05D000020 4.7e-06 54.7 54 51.9
Psat4g089120 Pisum sativum HOM05D000245 ORTHO05D000020 8.0e-06 53.9 94 37.2
Sed0021609 Sechium edule HOM05D000245 ORTHO05D000020 8.0e-06 53.9 54 51.9


User provided reference genes

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