Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g050850.2 Solanum lycopersicum HOM05D006263 ORTHO05D007549 6.7e-201 703.7 343 100.0
Sopen10g022420 Solanum pennellii HOM05D006263 ORTHO05D007549 2.8e-199 698.4 343 98.5
PGSC0003DMG400008259 Solanum tuberosum HOM05D006263 ORTHO05D007549 2.6e-197 691.8 343 98.3
CAN.G216.5 Capsicum annuum HOM05D006263 ORTHO05D007549 1.2e-186 656.4 339 92.0
Nitab4.5_0002825g0060 Nicotiana tabacum HOM05D006263 ORTHO05D007549 1.1e-182 643.3 339 90.9
Nitab4.5_0000001g0100 Nicotiana tabacum HOM05D006263 ORTHO05D007549 1.6e-181 639.4 339 89.7
Peaxi162Scf00076g01055 Petunia axillaris HOM05D006263 ORTHO05D007549 1.8e-161 572.8 340 83.2
Oeu060008.1 Olea europaea HOM05D006263 ORTHO05D007549 7.1e-150 534.3 343 74.3
Dinv14580 Davidia involucrata HOM05D006263 ORTHO05D007549 1.2e-149 533.5 341 74.5
Migut.B01469 Erythranthe guttata HOM05D006263 ORTHO05D007549 9.2e-142 507.3 333 70.3
DCAR_013689 Daucus carota HOM05D006263 ORTHO05D007549 4.6e-141 505.0 337 69.7
Rhsim04G0087300 Rhododendron simsii HOM05D006263 ORTHO05D007549 6.0e-141 504.6 342 71.6
GSVIVG01033398001 Vitis vinifera HOM05D006263 ORTHO05D007549 4.3e-139 498.4 338 70.1
Lj2A357T95 Lonicera japonica HOM05D006263 ORTHO05D007549 2.8e-138 495.7 343 68.8
CSS0025413 Camellia sinensis var. sinensis HOM05D006263 ORTHO05D007549 8.1e-138 494.2 335 71.3
Ciclev10020896m.g Citrus clementina HOM05D006263 ORTHO05D007549 4.0e-137 491.9 344 66.6
TAR623G0038 Trochodendron aralioides HOM05D006263 ORTHO05D007549 2.6e-136 489.2 338 71.0
SGA_v2.0_scaffold145G36025 Striga asiatica HOM05D006263 ORTHO05D007549 3.2e-134 482.3 334 66.8
COL.COLO4_13602 Corchorus olitorius HOM05D006263 ORTHO05D007549 4.2e-134 481.9 345 66.4
PSO339G1401 Papaver somniferum HOM05D006263 ORTHO05D007549 4.6e-133 478.4 337 68.0
Atru.chr2.1379 Acer truncatum HOM05D006263 ORTHO05D007549 7.8e-133 477.6 348 66.7
Cfa016439 Carpinus fangiana HOM05D006263 ORTHO05D007549 1.0e-132 477.2 337 69.4
Gorai.007G289300 Gossypium raimondii HOM05D006263 ORTHO05D007549 1.3e-132 476.9 340 66.2
Thecc.05G294200 Theobroma cacao HOM05D006263 ORTHO05D007549 1.3e-132 476.9 342 66.4
Haze_19416 Corylus avellana HOM05D006263 ORTHO05D007549 1.7e-132 476.5 337 68.5
Duzib177G1028 Durio zibethinus HOM05D006263 ORTHO05D007549 3.9e-132 475.3 339 67.3
Prupe.7G003700 Prunus persica HOM05D006263 ORTHO05D007549 5.1e-132 474.9 334 67.7
Haze_19445 Corylus avellana HOM05D006263 ORTHO05D007549 6.6e-132 474.6 337 68.2
Gohir.A11G259300 Gossypium hirsutum HOM05D006263 ORTHO05D007549 1.1e-131 473.8 340 66.2
MSTRG.20649 Avicennia marina HOM05D006263 ORTHO05D007549 1.5e-131 473.4 333 67.9
Potri.006G233200 Populus trichocarpa HOM05D006263 ORTHO05D007549 1.5e-131 473.4 343 65.9
CiPaw.10G000900 Carya illinoinensis HOM05D006263 ORTHO05D007549 1.9e-131 473.0 343 67.6
Manes.09G141600 Manihot esculenta HOM05D006263 ORTHO05D007549 1.9e-131 473.0 342 67.3
Hund06464 Selenicereus undatus HOM05D006263 ORTHO05D007549 1.9e-131 473.0 333 67.0
Gohir.D11G269500 Gossypium hirsutum HOM05D006263 ORTHO05D007549 2.5e-131 472.6 340 65.6
PSO384G1918 Papaver somniferum HOM05D006263 ORTHO05D007549 3.3e-131 472.2 336 67.9
TWI34G1357 Tripterygium wilfordii HOM05D006263 ORTHO05D007549 3.3e-131 472.2 345 66.1
Psat1g096040 Pisum sativum HOM05D006263 ORTHO05D007549 1.6e-130 469.9 337 65.0
Aqoxy1G00489 Aquilegia oxysepala HOM05D006263 ORTHO05D007549 2.1e-130 469.5 336 66.1
Lj6g0008715 Lotus japonicus HOM05D006263 ORTHO05D007549 2.8e-130 469.2 341 64.8
Lsat_1_v5_gn_1_59641 Lactuca sativa HOM05D006263 ORTHO05D007549 4.8e-130 468.4 342 64.6
MELO3C006156.2 Cucumis melo HOM05D006263 ORTHO05D007549 1.1e-129 467.2 339 64.6
Cc06_g22910 Coffea canephora HOM05D006263 ORTHO05D007549 1.4e-129 466.8 335 65.7
Phvul.004G080400 Phaseolus vulgaris HOM05D006263 ORTHO05D007549 3.1e-129 465.7 330 67.6
Potri.019G034400 Populus trichocarpa HOM05D006263 ORTHO05D007549 3.1e-129 465.7 342 65.2
MD12G1003100 Malus domestica HOM05D006263 ORTHO05D007549 5.3e-129 464.9 346 64.5
Glyma.16G153300 Glycine max HOM05D006263 ORTHO05D007549 6.9e-129 464.5 339 65.8
Nn7g35844 Nelumbo nucifera HOM05D006263 ORTHO05D007549 6.9e-129 464.5 340 66.5
CANSAT78G2484 Cannabis sativa HOM05D006263 ORTHO05D007549 1.2e-128 463.8 339 64.6
HanXRQChr01g0024721 Helianthus annuus HOM05D006263 ORTHO05D007549 1.5e-128 463.4 347 63.4
VMungo0464G2181 Vigna mungo HOM05D006263 ORTHO05D007549 3.4e-128 462.2 334 65.9
ClCG05G001960 Citrullus lanatus HOM05D006263 ORTHO05D007549 7.6e-128 461.1 339 63.7
QL07p019666 Quercus lobata HOM05D006263 ORTHO05D007549 2.9e-127 459.1 347 65.7
unitig_26.g9717 Utricularia gibba HOM05D006263 ORTHO05D007549 2.9e-127 459.1 332 63.0
Sabra19G0044500 Salix brachista HOM05D006263 ORTHO05D007549 4.9e-127 458.4 343 63.6
BraA10t44195Z Brassica rapa HOM05D006263 ORTHO05D007549 1.4e-126 456.8 331 62.2
RcHm_v2.0_Chr3g0497171 Rosa chinensis HOM05D006263 ORTHO05D007549 1.4e-126 456.8 350 64.0
THA.LOC104827270 Tarenaya hassleriana HOM05D006263 ORTHO05D007549 2.4e-126 456.1 330 65.5
Carub.0006s1648 Capsella rubella HOM05D006263 ORTHO05D007549 3.2e-126 455.7 348 61.5
C09p58780 Brassica napus HOM05D006263 ORTHO05D007549 4.2e-126 455.3 333 61.9
Sp6g26120 Schrenkiella parvula HOM05D006263 ORTHO05D007549 4.2e-126 455.3 332 63.9
AT5G18200 Arabidopsis thaliana HOM05D006263 ORTHO05D007549 1.2e-125 453.8 333 63.1
A10p21320 Brassica napus HOM05D006263 ORTHO05D007549 1.2e-125 453.8 331 61.9
BcaC04g18720 Brassica carinata HOM05D006263 ORTHO05D007549 4.6e-125 451.8 333 61.6
AUR62027102 Chenopodium quinoa HOM05D006263 ORTHO05D007549 6.0e-125 451.4 346 64.2
AUR62012878 Chenopodium quinoa HOM05D006263 ORTHO05D007549 1.0e-124 450.7 335 66.0
BolC9t58720H Brassica oleracea HOM05D006263 ORTHO05D007549 1.3e-124 450.3 334 61.7
Eucgr.L01413 Eucalyptus grandis HOM05D006263 ORTHO05D007549 3.0e-124 449.1 336 64.0
Thhalv10013996m.g Eutrema salsugineum HOM05D006263 ORTHO05D007549 3.0e-124 449.1 332 62.3
TAR369G0989 Trochodendron aralioides HOM05D006263 ORTHO05D007549 5.1e-124 448.4 337 65.9
Ca_04490_v3 Cicer arietinum L. HOM05D006263 ORTHO05D007549 6.7e-124 448.0 343 63.0
AL6G29400 Arabidopsis lyrata HOM05D006263 ORTHO05D007549 8.7e-124 447.6 333 63.1
arahy.Tifrunner.gnm1.ann1.NGU2DL Arachis hypogaea HOM05D006263 ORTHO05D007549 8.7e-124 447.6 338 63.3
Eucgr.K02258 Eucalyptus grandis HOM05D006263 ORTHO05D007549 8.7e-124 447.6 336 63.7
PGR042G1093 Punica granatum HOM05D006263 ORTHO05D007549 1.1e-123 447.2 337 63.5
Lalb_Chr06g0173981 Lupinus albus HOM05D006263 ORTHO05D007549 1.5e-123 446.8 342 62.9
BcaB08g36696 Brassica carinata HOM05D006263 ORTHO05D007549 1.9e-123 446.4 329 62.3
ECA285G0004 Erigeron canadensis HOM05D006263 ORTHO05D007549 1.9e-123 446.4 340 63.2
Medtr6g029470 Medicago truncatula HOM05D006263 ORTHO05D007549 2.5e-123 446.0 333 65.5
Actinidia17306 Actinidia chinensis HOM05D000412 ORTHO05D000429 8.1e-122 441.0 286 73.8
CARHR194860 Cardamine hirsuta HOM05D006263 ORTHO05D007549 1.1e-121 440.7 338 60.7
Sabra19G0042300 Salix brachista HOM05D006263 ORTHO05D007549 4.0e-121 438.7 389 56.3
vmacro09144 Vaccinium macrocarpon HOM05D006263 ORTHO05D007549 7.1e-118 427.9 334 62.0
CDE02G1162 Ceratophyllum demersum HOM05D006263 ORTHO05D007549 3.5e-117 425.6 337 60.2
FAN23G2537 Fragaria x ananassa HOM05D006263 ORTHO05D007549 4.6e-117 425.2 330 62.7
Aa31LG11G11400 Aethionema arabicum HOM05D006263 ORTHO05D007549 7.9e-117 424.5 365 57.3
FvH4_1g28080 Fragaria vesca HOM05D006263 ORTHO05D007549 7.9e-117 424.5 330 62.1
FAN19G0970 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.8e-116 423.3 330 61.8
SalBow5G0264 Salvia bowleyana HOM05D006263 ORTHO05D007549 1.1e-115 420.6 334 60.2
HPP92_015639 Vanilla planifolia HOM05D006263 ORTHO05D007549 1.9e-115 419.9 344 58.4
FAN28G0550 Fragaria x ananassa HOM05D006263 ORTHO05D007549 5.6e-115 418.3 330 61.8
FAN26G0246 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.3e-114 417.2 330 61.8
Ca_04491_v3 Cicer arietinum L. HOM05D006263 ORTHO05D000429 2.8e-114 416.0 336 61.0
ATR0697G038 Amborella trichopoda HOM05D006263 ORTHO05D007549 3.1e-113 412.5 376 56.6
FAN28G1368 Fragaria x ananassa HOM05D006263 ORTHO05D007549 6.9e-113 411.4 330 60.3
EL10Ac9g22064 Beta vulgaris HOM05D006263 ORTHO05D007549 1.5e-112 410.2 337 61.1
Zm00001eb301000 Zea mays HOM05D006263 ORTHO05D007549 2.6e-112 409.5 354 57.1
Oeu003888.1 Olea europaea HOM05D006263 ORTHO05D007549 3.2e-110 402.5 265 72.5
TPR.G34629 Trifolium pratense HOM05D006263 ORTHO05D007549 2.1e-109 399.8 335 57.0
Cpa.g.sc51.112 Carica papaya HOM05D006263 ORTHO05D007549 1.3e-108 397.1 349 59.6
Ah.01g007390 Amaranthus hybridus HOM05D006263 ORTHO05D007549 3.0e-108 396.0 435 49.9
Psat1g096000 Pisum sativum HOM05D006263 ORTHO05D007549 8.7e-108 394.4 336 57.1
Sc18g0007080 Simmondsia chinensis HOM05D006263 ORTHO05D007549 6.9e-105 384.8 333 58.3
Medtr6g029530 Medicago truncatula HOM05D006263 ORTHO05D007549 1.5e-104 383.6 335 56.7
SEGI_37923 Sequoiadendron giganteum HOM05D006263 ORTHO05D007549 1.8e-100 370.2 346 52.9
MBI11_g31289_MAGBIO Magnolia biondii HOM05D006263 ORTHO05D007549 5.1e-100 368.6 352 54.3
CsaV3_3G009370 Cucumis sativus L. HOM05D006263 ORTHO05D007549 1.7e-90 337.0 251 63.3
Sed0020840 Sechium edule HOM05D006263 ORTHO05D007549 6.5e-87 325.1 254 61.0
Eucgr.A02096 Eucalyptus grandis HOM05D006263 ORTHO05D007549 1.1e-86 324.3 287 58.5
Os07g0171200 Oryza sativa ssp. japonica HOM05D006263 ORTHO05D007549 2.2e-82 310.1 232 62.9
Hma1.2p1_0376F.1_g139140 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 5.5e-78 295.4 227 63.0
Hma1.2p1_0376F.1_g139150 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 1.4e-76 290.8 183 74.3
Mapoly0103s0062 Marchantia polymorpha HOM05D006263 ORTHO05D007549 4.5e-72 275.8 345 40.9
Pp3c17_20460 Physcomitrium patens HOM05D006263 ORTHO05D007549 9.4e-70 268.1 343 38.5
SMO367G0539 Selaginella moellendorffii HOM05D006263 ORTHO05D007549 1.2e-59 234.6 337 38.0
FAN16G0439 Fragaria x ananassa HOM05D006263 ORTHO05D007549 3.4e-59 233.0 201 58.2
Hma1.2p1_0376F.1_g139120 Hydrangea macrophylla HOM05D006263 ORTHO05D007549 1.5e-51 207.6 166 67.5
RhsimUnG0048700 Rhododendron simsii HOM05D006263 ORTHO05D007549 4.6e-48 196.1 183 57.9
FAN18G1683 Fragaria x ananassa HOM05D000349 ORTHO05D007549 2.1e-45 187.2 195 50.8
Pp3c2_1350 Physcomitrium patens HOM05D006263 ORTHO05D007549 2.1e-45 187.2 261 39.5
FAN06G4136 Fragaria x ananassa HOM05D000349 ORTHO05D007549 9.2e-41 171.8 181 50.3
FAN18G1526 Fragaria x ananassa HOM05D000349 ORTHO05D007549 2.3e-36 157.1 173 49.7
FAN24G0044 Fragaria x ananassa HOM05D006263 ORTHO05D007549 1.5e-35 154.5 224 41.5
TPR.G18346 Trifolium pratense HOM05D006263 ORTHO05D007549 1.4e-25 121.3 81 69.1
SMO275G0019 Selaginella moellendorffii HOM05D006263 ORTHO05D007549 2.9e-18 97.1 130 38.5
FAN03G3217 Fragaria x ananassa HOM05D002676 ORTHO05D003194 4.9e-18 96.3 70 62.9
FAN11G1140 Fragaria x ananassa HOM05D002676 ORTHO05D003194 4.9e-18 96.3 70 62.9
FAN22G0360 Fragaria x ananassa HOM05D002676 ORTHO05D003194 4.9e-18 96.3 70 62.9
FAN22G1437 Fragaria x ananassa HOM05D002676 ORTHO05D007549 4.2e-17 93.2 70 61.4
SMO367G0580 Selaginella moellendorffii HOM05D006263 ORTHO05D378923 8.7e-15 85.5 128 35.9
FAN08G1181 Fragaria x ananassa HOM05D003914 ORTHO05D001189 2.8e-13 80.5 76 52.6
FAN27G3525 Fragaria x ananassa HOM05D003914 ORTHO05D001189 2.8e-13 80.5 76 52.6
FAN15G0659 Fragaria x ananassa HOM05D006263 ORTHO05D007549 8.1e-13 79.0 161 35.4
FAN22G0951 Fragaria x ananassa HOM05D000005 ORTHO05D000294 1.5e-11 74.7 71 52.1
FAN25G1138 Fragaria x ananassa HOM05D012843 ORTHO05D017973 2.6e-11 73.9 71 52.1
FAN12G3135 Fragaria x ananassa HOM05D000005 ORTHO05D000294 9.9e-11 72.0 71 50.7
FAN22G2156 Fragaria x ananassa HOM05D002676 ORTHO05D003194 1.4e-09 68.2 69 49.3
FAN09G2057 Fragaria x ananassa HOM05D000005 ORTHO05D000294 2.4e-09 67.4 55 54.5
Phvul.004G082000 Phaseolus vulgaris HOM05D006263 ORTHO05D007549 2.1e-08 64.3 61 52.5
SHI23126 Sapria himalayana HOM05D006263 ORTHO05D007549 6.7e-07 59.3 89 37.1


User provided reference genes

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