Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g050700.1 Solanum lycopersicum HOM05D000106 ORTHO05D051157 5.6e-40 167.2 85 100.0
Sopen09g002170 Solanum pennellii HOM05D000106 ORTHO05D001887 7.1e-19 97.1 122 50.0
PGSC0003DMG400001732 Solanum tuberosum HOM05D000106 ORTHO05D001887 7.1e-19 97.1 122 50.0
Solyc09g007280.4 Solanum lycopersicum HOM05D000106 ORTHO05D001887 1.6e-18 95.9 120 50.0
CAN.G608.23 Capsicum annuum HOM05D000106 ORTHO05D001887 1.0e-17 93.2 120 49.2
Nitab4.5_0006152g0020 Nicotiana tabacum HOM05D000106 ORTHO05D001887 1.9e-16 89.0 122 45.9
Nitab4.5_0001142g0010 Nicotiana tabacum HOM05D000106 ORTHO05D001887 4.3e-16 87.8 120 45.8
Peaxi162Scf00005g04914 Petunia axillaris HOM05D000106 ORTHO05D001887 5.7e-16 87.4 122 44.3
GSVIVG01025552001 Vitis vinifera HOM05D000106 ORTHO05D001887 3.1e-14 81.6 122 42.6
TAR636G2039 Trochodendron aralioides HOM05D000106 ORTHO05D001887 2.0e-13 79.0 122 41.0
Cfa017500 Carpinus fangiana HOM05D000106 ORTHO05D001887 3.4e-13 78.2 122 41.0
PGSC0003DMG400010120 Solanum tuberosum HOM05D000106 ORTHO05D051157 3.4e-13 78.2 47 80.9
Ciclev10011018m.g Citrus clementina HOM05D000106 ORTHO05D001887 4.5e-13 77.8 121 41.3
Cc06_g03500 Coffea canephora HOM05D000106 ORTHO05D001887 5.9e-13 77.4 122 41.8
HanXRQChr11g0349911 Helianthus annuus HOM05D000106 ORTHO05D001887 1.3e-12 76.3 122 40.2
Medtr1g066950 Medicago truncatula HOM05D000106 ORTHO05D001887 1.7e-12 75.9 122 40.2
TPR.G35659 Trifolium pratense HOM05D000106 ORTHO05D001887 1.7e-12 75.9 122 40.2
Lalb_Chr21g0314631 Lupinus albus HOM05D000106 ORTHO05D001887 2.2e-12 75.5 122 40.2
Manes.09G080500 Manihot esculenta HOM05D000106 ORTHO05D001887 2.2e-12 75.5 122 41.0
Oeu026069.1 Olea europaea HOM05D000106 ORTHO05D001887 2.2e-12 75.5 117 40.2
Psat6g067040 Pisum sativum HOM05D000106 ORTHO05D001887 2.2e-12 75.5 120 40.8
SGA_v2.0_scaffold126G33890 Striga asiatica HOM05D000106 ORTHO05D001887 2.2e-12 75.5 120 40.0
Ca_08820_v3 Cicer arietinum L. HOM05D000106 ORTHO05D001887 2.9e-12 75.1 122 40.2
Lj5g0002940 Lotus japonicus HOM05D000106 ORTHO05D001887 2.9e-12 75.1 122 40.2
Glyma.13G136700 Glycine max HOM05D000106 ORTHO05D001887 3.8e-12 74.7 114 42.1
HanXRQChr01g0027291 Helianthus annuus HOM05D000106 ORTHO05D001887 3.8e-12 74.7 122 39.3
TAR636G0023 Trochodendron aralioides HOM05D000106 ORTHO05D001887 3.8e-12 74.7 122 40.2
TAR685G0003 Trochodendron aralioides HOM05D000106 ORTHO05D001887 3.8e-12 74.7 122 40.2
CSS0008896 Camellia sinensis var. sinensis HOM05D000106 ORTHO05D001887 5.0e-12 74.3 122 39.3
CSS0046268 Camellia sinensis var. sinensis HOM05D000106 ORTHO05D001887 5.0e-12 74.3 122 39.3
Glyma.19G178400 Glycine max HOM05D000106 ORTHO05D001887 5.0e-12 74.3 122 39.3
Hma1.2p1_0111F.1_g053800 Hydrangea macrophylla HOM05D000106 ORTHO05D001887 5.0e-12 74.3 122 40.2
TAR623G0365 Trochodendron aralioides HOM05D000106 ORTHO05D001887 5.0e-12 74.3 122 40.2
Actinidia05275 Actinidia chinensis HOM05D000106 ORTHO05D001887 6.5e-12 73.9 122 39.3
Phvul.001G174500 Phaseolus vulgaris HOM05D000106 ORTHO05D001887 6.5e-12 73.9 122 39.3
TAR633G0187 Trochodendron aralioides HOM05D000106 ORTHO05D001887 6.5e-12 73.9 118 39.8
Dinv37246 Davidia involucrata HOM05D000106 ORTHO05D001887 8.5e-12 73.6 122 39.3
VMungo1383G3207 Vigna mungo HOM05D000106 ORTHO05D001887 8.5e-12 73.6 122 39.3
Nn2g12977 Nelumbo nucifera HOM05D000106 ORTHO05D001887 1.1e-11 73.2 120 38.3
Psat3g045680 Pisum sativum HOM05D000106 ORTHO05D001887 1.1e-11 73.2 122 40.2
Ca_11446_v3 Cicer arietinum L. HOM05D000106 ORTHO05D001887 1.4e-11 72.8 122 39.3
Glyma.03G177600 Glycine max HOM05D000106 ORTHO05D001887 1.4e-11 72.8 122 38.5
Lalb_Chr06g0171341 Lupinus albus HOM05D000106 ORTHO05D001887 1.4e-11 72.8 120 38.3
QL07p045366 Quercus lobata HOM05D000106 ORTHO05D001887 1.4e-11 72.8 122 39.3
Aqoxy4G03178 Aquilegia oxysepala HOM05D000106 ORTHO05D001887 1.9e-11 72.4 121 39.7
ECA238G4645 Erigeron canadensis HOM05D000106 ORTHO05D001887 1.9e-11 72.4 122 36.9
ECA248G1493 Erigeron canadensis HOM05D000106 ORTHO05D001887 1.9e-11 72.4 122 38.5
Glyma.10G048800 Glycine max HOM05D000106 ORTHO05D001887 1.9e-11 72.4 118 39.0
Lsat_1_v5_gn_1_53780 Lactuca sativa HOM05D000106 ORTHO05D001887 1.9e-11 72.4 120 40.0
PGR004G1620 Punica granatum HOM05D000106 ORTHO05D001887 1.9e-11 72.4 120 40.0
CsaV3_3G035480 Cucumis sativus L. HOM05D000106 ORTHO05D001887 2.5e-11 72.0 120 40.0
Medtr7g100630 Medicago truncatula HOM05D000106 ORTHO05D001887 2.5e-11 72.0 122 39.3
Oeu029547.1 Olea europaea HOM05D000106 ORTHO05D001887 2.5e-11 72.0 117 39.3
MELO3C009308.2 Cucumis melo HOM05D000106 ORTHO05D001887 3.2e-11 71.6 120 40.0
Lj2A106T36 Lonicera japonica HOM05D000106 ORTHO05D001887 3.2e-11 71.6 127 37.8
Manes.08G002800 Manihot esculenta HOM05D000106 ORTHO05D001887 4.2e-11 71.2 122 37.7
Nn2g10638 Nelumbo nucifera HOM05D000106 ORTHO05D001887 4.2e-11 71.2 122 38.5
Ah.08g211960 Amaranthus hybridus HOM05D000106 ORTHO05D001887 5.5e-11 70.9 120 39.2
vmacro08694 Vaccinium macrocarpon HOM05D000106 ORTHO05D001887 5.5e-11 70.9 122 37.7
VMungo0720G2752 Vigna mungo HOM05D000106 ORTHO05D001887 5.5e-11 70.9 114 40.4
CiPaw.10G137900 Carya illinoinensis HOM05D000106 ORTHO05D001887 7.2e-11 70.5 122 38.5
Sed0019041 Sechium edule HOM05D000106 ORTHO05D001887 7.2e-11 70.5 120 39.2
Thecc.05G053300 Theobroma cacao HOM05D000106 ORTHO05D001887 7.2e-11 70.5 121 38.8
TWI74G1182 Tripterygium wilfordii HOM05D000106 ORTHO05D001887 7.2e-11 70.5 117 38.5
HanXRQChr14g0454611 Helianthus annuus HOM05D000106 ORTHO05D001887 9.4e-11 70.1 122 37.7
Phvul.007G163000 Phaseolus vulgaris HOM05D000106 ORTHO05D001887 9.4e-11 70.1 114 40.4
Rhsim04G0151800 Rhododendron simsii HOM05D000106 ORTHO05D001887 9.4e-11 70.1 122 38.5
Sabra06G0103700 Salix brachista HOM05D000106 ORTHO05D001887 9.4e-11 70.1 122 38.5
Sabra16G0091900 Salix brachista HOM05D000106 ORTHO05D001887 9.4e-11 70.1 122 37.7
SalBow3G0908 Salvia bowleyana HOM05D000106 ORTHO05D001887 9.4e-11 70.1 120 38.3
SalBow3G2961 Salvia bowleyana HOM05D000106 ORTHO05D001887 9.4e-11 70.1 120 38.3
TPR.G36905 Trifolium pratense HOM05D000106 ORTHO05D001887 9.4e-11 70.1 122 38.5
Actinidia19719 Actinidia chinensis HOM05D000106 ORTHO05D001887 1.2e-10 69.7 122 39.3
arahy.Tifrunner.gnm1.ann1.SU0VWY Arachis hypogaea HOM05D000106 ORTHO05D001887 1.2e-10 69.7 122 38.5
arahy.Tifrunner.gnm1.ann1.UPJJ9W Arachis hypogaea HOM05D000106 ORTHO05D001887 1.2e-10 69.7 122 38.5
COL.COLO4_27088 Corchorus olitorius HOM05D000106 ORTHO05D001887 1.2e-10 69.7 122 37.7
Potri.016G084900 Populus trichocarpa HOM05D000106 ORTHO05D001887 1.2e-10 69.7 122 38.5
arahy.Tifrunner.gnm1.ann1.I5MSTN Arachis hypogaea HOM05D000106 ORTHO05D001887 2.1e-10 68.9 120 37.5
arahy.Tifrunner.gnm1.ann1.UWY0VP Arachis hypogaea HOM05D000106 ORTHO05D001887 2.1e-10 68.9 120 37.5
BcaC01g05628 Brassica carinata HOM05D000106 ORTHO05D001887 2.1e-10 68.9 122 36.1
Hund20153 Selenicereus undatus HOM05D000106 ORTHO05D001887 2.1e-10 68.9 114 39.5
Sc02g0002050 Simmondsia chinensis HOM05D000106 ORTHO05D001887 2.1e-10 68.9 120 38.3
SGA_v2.0_scaffold75G24884 Striga asiatica HOM05D000106 ORTHO05D001887 2.1e-10 68.9 120 38.3
Ah.15g092070 Amaranthus hybridus HOM05D000106 ORTHO05D001887 2.7e-10 68.6 120 37.5
AT2G37050 Arabidopsis thaliana HOM05D000106 ORTHO05D001887 2.7e-10 68.6 121 37.2
MSTRG.5715 Avicennia marina HOM05D000106 ORTHO05D001887 2.7e-10 68.6 122 36.9
CSS0000635 Camellia sinensis var. sinensis HOM05D000106 ORTHO05D001887 2.7e-10 68.6 122 38.5
CSS0026471 Camellia sinensis var. sinensis HOM05D000106 ORTHO05D001887 2.7e-10 68.6 122 38.5
Potri.006G132100 Populus trichocarpa HOM05D000106 ORTHO05D001887 2.7e-10 68.6 122 38.5
BcaB01g03793 Brassica carinata HOM05D000106 ORTHO05D001887 3.6e-10 68.2 122 36.1
Gohir.A09G152300 Gossypium hirsutum HOM05D000106 ORTHO05D001887 3.6e-10 68.2 114 37.7
Sp4g19360 Schrenkiella parvula HOM05D000106 ORTHO05D001887 3.6e-10 68.2 120 36.7
AL4G33390 Arabidopsis lyrata HOM05D000106 ORTHO05D001887 4.6e-10 67.8 121 38.0
MSTRG.19134 Avicennia marina HOM05D000106 ORTHO05D001887 4.6e-10 67.8 114 37.7
Duzib128G0991 Durio zibethinus HOM05D000106 ORTHO05D001887 4.6e-10 67.8 122 37.7
Gohir.D09G147900 Gossypium hirsutum HOM05D000106 ORTHO05D001887 4.6e-10 67.8 122 36.1
Gorai.006G169000 Gossypium raimondii HOM05D000106 ORTHO05D001887 4.6e-10 67.8 122 36.1
AUR62040477 Chenopodium quinoa HOM05D000106 ORTHO05D001887 6.1e-10 67.4 120 37.5
AUR62042617 Chenopodium quinoa HOM05D000106 ORTHO05D001887 6.1e-10 67.4 120 37.5
PSO339G0510 Papaver somniferum HOM05D000106 ORTHO05D001887 6.1e-10 67.4 121 38.0
A03p20410 Brassica napus HOM05D000106 ORTHO05D001887 7.9e-10 67.0 122 36.1
C03p24000 Brassica napus HOM05D000106 ORTHO05D001887 7.9e-10 67.0 122 36.1
BolC3t14791H Brassica oleracea HOM05D000106 ORTHO05D001887 7.9e-10 67.0 122 36.1
BraA03t11285Z Brassica rapa HOM05D000106 ORTHO05D001887 7.9e-10 67.0 122 36.1
DCAR_020871 Daucus carota HOM05D000106 ORTHO05D001887 7.9e-10 67.0 122 36.1
Eucgr.K03208 Eucalyptus grandis HOM05D000106 ORTHO05D001887 7.9e-10 67.0 122 36.1
Sed0011403 Sechium edule HOM05D000106 ORTHO05D001887 7.9e-10 67.0 120 38.3
CARHR131550 Cardamine hirsuta HOM05D000106 ORTHO05D001887 1.0e-09 66.6 120 36.7
Aqoxy2G01880 Aquilegia oxysepala HOM05D000106 ORTHO05D001887 1.4e-09 66.2 118 39.0
EL10Ac7g17341 Beta vulgaris HOM05D000106 ORTHO05D001887 1.4e-09 66.2 120 37.5
Duzib093G1433 Durio zibethinus HOM05D000106 ORTHO05D001887 1.4e-09 66.2 122 36.1
Thhalv10016198m.g Eutrema salsugineum HOM05D000106 ORTHO05D001887 1.4e-09 66.2 120 36.7
CANSAT80G0390 Cannabis sativa HOM05D000106 ORTHO05D001887 1.8e-09 65.9 114 37.7
Carub.0004s1893 Capsella rubella HOM05D000106 ORTHO05D001887 1.8e-09 65.9 121 37.2
MD12G1125100 Malus domestica HOM05D000106 ORTHO05D001887 1.8e-09 65.9 118 37.3
PSO384G4763 Papaver somniferum HOM05D000106 ORTHO05D001887 1.8e-09 65.9 122 38.5
THA.LOC104805273 Tarenaya hassleriana HOM05D000106 ORTHO05D001887 1.8e-09 65.9 123 37.4
BcaB02g09306 Brassica carinata HOM05D000106 ORTHO05D001887 2.3e-09 65.5 121 37.2
Eucgr.K03207 Eucalyptus grandis HOM05D000106 ORTHO05D001887 3.0e-09 65.1 122 35.2
PSO339G3836 Papaver somniferum HOM05D000106 ORTHO05D001887 3.9e-09 64.7 123 35.8
PSO384G4538 Papaver somniferum HOM05D000106 ORTHO05D001887 3.9e-09 64.7 123 35.8
TAR685G0004 Trochodendron aralioides HOM05D000106 ORTHO05D001887 3.9e-09 64.7 124 36.3
BcaC02g11832 Brassica carinata HOM05D000106 ORTHO05D001887 8.8e-09 63.5 121 36.4
C04p10890 Brassica napus HOM05D000106 ORTHO05D001887 8.8e-09 63.5 121 36.4
BolC4t22681H Brassica oleracea HOM05D000106 ORTHO05D001887 8.8e-09 63.5 121 36.4
Cpa.g.sc114.54 Carica papaya HOM05D000106 ORTHO05D001887 1.1e-08 63.2 120 34.2
FvH4_6g15210 Fragaria vesca HOM05D000106 ORTHO05D001887 1.1e-08 63.2 114 36.8
FAN05G4784 Fragaria x ananassa HOM05D000106 ORTHO05D001887 1.1e-08 63.2 114 36.8
FAN14G4306 Fragaria x ananassa HOM05D000106 ORTHO05D001887 1.1e-08 63.2 114 36.8
A05p08770 Brassica napus HOM05D000106 ORTHO05D001887 1.5e-08 62.8 121 36.4
Eucgr.D01371 Eucalyptus grandis HOM05D000106 ORTHO05D001887 1.5e-08 62.8 120 35.0
RcHm_v2.0_Chr3g0468561 Rosa chinensis HOM05D000106 ORTHO05D001887 1.5e-08 62.8 114 36.8
MD12G1125000 Malus domestica HOM05D000106 ORTHO05D001887 1.9e-08 62.4 114 36.8
Solyc12g039080.3 Solanum lycopersicum HOM05D000106 ORTHO05D001887 1.9e-08 62.4 98 42.9
Lsat_1_v5_gn_2_109721 Lactuca sativa HOM05D000106 ORTHO05D001887 2.5e-08 62.0 122 32.8
PSO339G2768 Papaver somniferum HOM05D000106 ORTHO05D001887 2.5e-08 62.0 121 36.4
Aa31LG5G22390 Aethionema arabicum HOM05D000106 ORTHO05D001887 4.3e-08 61.2 120 35.0
BraA05t19845Z Brassica rapa HOM05D000106 ORTHO05D001887 4.3e-08 61.2 121 35.5
MD04G1104800 Malus domestica HOM05D000106 ORTHO05D001887 4.3e-08 61.2 118 36.4
Prupe.6G241900 Prunus persica HOM05D000106 ORTHO05D001887 4.3e-08 61.2 118 35.6
Actinidia13108 Actinidia chinensis HOM05D000106 ORTHO05D001887 7.4e-08 60.5 53 58.5
SEGI_09941 Sequoiadendron giganteum HOM05D000106 ORTHO05D000160 9.7e-08 60.1 120 36.7
CDE09G0679 Ceratophyllum demersum HOM05D000106 ORTHO05D001887 1.3e-07 59.7 120 33.3
FAN02G2336 Fragaria x ananassa HOM05D000106 ORTHO05D001887 1.3e-07 59.7 114 36.0
ATR0594G050 Amborella trichopoda HOM05D000106 ORTHO05D001887 8.2e-07 57.0 118 34.7
MBI14_g24331_MAGBIO Magnolia biondii HOM05D000106 ORTHO05D001887 8.2e-07 57.0 114 33.3
PGR004G1726 Punica granatum HOM05D000106 ORTHO05D001887 1.8e-06 55.8 122 34.4
PSO339G1372 Papaver somniferum HOM05D000106 ORTHO05D001887 5.3e-06 54.3 121 33.9
PSO384G3995 Papaver somniferum HOM05D000106 ORTHO05D001887 9.1e-06 53.5 121 33.1


User provided reference genes

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