Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g050220.2 Solanum lycopersicum HOM05D011234 ORTHO05D003195 5.4e-136 487.6 244 100.0
Sopen10g021380 Solanum pennellii HOM05D011234 ORTHO05D003195 1.4e-123 446.4 234 95.3
PGSC0003DMG400006224 Solanum tuberosum HOM05D011234 ORTHO05D003195 7.8e-119 430.6 238 90.3
Nitab4.5_0007480g0060 Nicotiana tabacum HOM05D011234 ORTHO05D003195 6.1e-71 271.6 296 56.1
Nitab4.5_0002543g0100 Nicotiana tabacum HOM05D011234 ORTHO05D003195 1.8e-70 270.0 249 63.9
Solyc01g108100.3 Solanum lycopersicum HOM05D011234 ORTHO05D003195 2.4e-51 206.5 262 49.2
Sopen01g050330 Solanum pennellii HOM05D011234 ORTHO05D003195 3.1e-51 206.1 259 49.8
PGSC0003DMG401025788 Solanum tuberosum HOM05D011234 ORTHO05D003195 4.1e-51 205.7 260 50.4
Peaxi162Scf00003g02336 Petunia axillaris HOM05D011234 ORTHO05D003195 3.8e-49 199.1 173 60.7
Peaxi162Scf00016g01956 Petunia axillaris HOM05D011234 ORTHO05D003195 4.2e-48 195.7 240 49.2
Cc02_g18840 Coffea canephora HOM05D011234 ORTHO05D003195 4.0e-22 109.4 252 35.3
Dinv42162 Davidia involucrata HOM05D003792 ORTHO05D003195 4.0e-22 109.4 272 36.0
Actinidia00436 Actinidia chinensis HOM05D003792 ORTHO05D003195 1.1e-19 101.3 264 34.1
Dinv15716 Davidia involucrata HOM05D003792 ORTHO05D003195 1.1e-19 101.3 251 35.1
CSS0015140 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 9.2e-19 98.2 246 34.6
Oeu025580.1 Olea europaea HOM05D003792 ORTHO05D003195 1.3e-17 94.4 221 38.0
CSS0036112 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 1.5e-16 90.9 198 39.4
Rhsim11G0165200 Rhododendron simsii HOM05D003792 ORTHO05D003195 1.4e-14 84.3 258 32.6
GSVIVG01031734001 Vitis vinifera HOM05D003792 ORTHO05D003195 1.4e-14 84.3 246 30.1
SalBow6G6536 Salvia bowleyana HOM05D011234 ORTHO05D003195 2.3e-14 83.6 225 32.4
Migut.B00353 Erythranthe guttata HOM05D011234 ORTHO05D003195 5.2e-14 82.4 240 32.9
Duzib052G0481 Durio zibethinus HOM05D003792 ORTHO05D003195 1.2e-13 81.3 248 31.5
Lalb_Chr05g0219211 Lupinus albus HOM05D003792 ORTHO05D003195 3.4e-13 79.7 260 28.1
MD05G1081700 Malus domestica HOM05D003792 ORTHO05D003195 3.4e-13 79.7 249 30.9
QL11p035325 Quercus lobata HOM05D003792 ORTHO05D003195 3.4e-13 79.7 214 31.3
MSTRG.20159 Avicennia marina HOM05D011234 ORTHO05D003195 1.7e-12 77.4 253 31.2
Lalb_Chr09g0328351 Lupinus albus HOM05D003792 ORTHO05D003195 7.1e-11 72.0 229 28.8
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 1.2e-10 71.2 205 30.2
TAR381G1051 Trochodendron aralioides HOM05D003792 ORTHO05D003195 2.7e-10 70.1 198 32.3
MSTRG.5362 Avicennia marina HOM05D011234 ORTHO05D003195 3.5e-10 69.7 186 34.4
CANSAT25G2784 Cannabis sativa HOM05D003792 ORTHO05D003195 4.6e-10 69.3 228 28.1
THA.LOC104819577 Tarenaya hassleriana HOM05D009953 ORTHO05D003195 1.0e-09 68.2 239 28.5
Haze_10092 Corylus avellana HOM05D003792 ORTHO05D003195 1.3e-09 67.8 283 28.3
CANSAT25G3506 Cannabis sativa HOM05D003792 ORTHO05D003195 2.3e-09 67.0 228 27.6
PSO210G6487 Papaver somniferum HOM05D003792 ORTHO05D003195 3.0e-09 66.6 205 31.2
Aa31LG2G16400 Aethionema arabicum HOM05D009953 ORTHO05D003195 3.9e-09 66.2 216 29.2
Dinv35957 Davidia involucrata HOM05D003792 ORTHO05D003195 3.9e-09 66.2 208 29.3
Sabra14G0019900 Salix brachista HOM05D003792 ORTHO05D003195 3.9e-09 66.2 246 30.5
Ciclev10029147m.g Citrus clementina HOM05D003792 ORTHO05D003195 5.1e-09 65.9 248 28.2
Lj4g0023306 Lotus japonicus HOM05D003792 ORTHO05D003195 6.6e-09 65.5 262 26.0
TAR376G0615 Trochodendron aralioides HOM05D003792 ORTHO05D003195 8.6e-09 65.1 200 31.5
Gorai.008G024800 Gossypium raimondii HOM05D003792 ORTHO05D003195 1.1e-08 64.7 259 28.2
Oeu007289.1 Olea europaea HOM05D011234 ORTHO05D003195 1.1e-08 64.7 140 33.6
Lj5C209G18 Lonicera japonica HOM05D003792 ORTHO05D003195 1.5e-08 64.3 177 33.9
Thhalv10026267m.g Eutrema salsugineum HOM05D009953 ORTHO05D003195 1.9e-08 63.9 224 30.4
Medtr4g085990 Medicago truncatula HOM05D003792 ORTHO05D003195 1.9e-08 63.9 203 27.1
AL7G17410 Arabidopsis lyrata HOM05D009953 ORTHO05D003195 3.3e-08 63.2 180 30.0
Glyma.02G131800 Glycine max HOM05D003792 ORTHO05D003195 4.3e-08 62.8 268 26.5
Potri.002G125900 Populus trichocarpa HOM05D003792 ORTHO05D003195 4.3e-08 62.8 213 31.0
Oeu012963.1 Olea europaea HOM05D003792 ORTHO05D003195 7.3e-08 62.0 227 26.9
Thecc.02G101400 Theobroma cacao HOM05D003792 ORTHO05D003195 7.3e-08 62.0 266 28.2
Gohir.A06G018700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 9.5e-08 61.6 232 28.9
Gohir.D12G024500 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.2e-07 61.2 257 28.0
Gorai.010G020000 Gossypium raimondii HOM05D003792 ORTHO05D003195 1.2e-07 61.2 190 31.1
Gohir.A12G023800 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.6e-07 60.8 245 25.7
Potri.014G029000 Populus trichocarpa HOM05D003792 ORTHO05D003195 1.6e-07 60.8 211 31.8
vmacro02043 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 1.6e-07 60.8 78 43.6
BcaNung03785 Brassica carinata HOM05D009953 ORTHO05D003195 2.1e-07 60.5 219 29.2
Eucgr.F00223 Eucalyptus grandis HOM05D003792 ORTHO05D003195 2.8e-07 60.1 190 30.5
Gohir.D06G017100 Gossypium hirsutum HOM05D003792 ORTHO05D003195 2.8e-07 60.1 191 30.9
TWI36G1706 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 2.8e-07 60.1 267 27.3
Carub.0007s0642 Capsella rubella HOM05D009953 ORTHO05D003195 4.7e-07 59.3 191 27.7
Duzib248G0608 Durio zibethinus HOM05D003792 ORTHO05D003195 6.2e-07 58.9 273 28.6
Migut.N01186 Erythranthe guttata HOM05D011234 ORTHO05D003195 6.2e-07 58.9 216 30.1
Aqoxy6G01313 Aquilegia oxysepala HOM05D003792 ORTHO05D003195 1.1e-06 58.2 241 27.4
BcaB03g11864 Brassica carinata HOM05D009953 ORTHO05D003195 1.1e-06 58.2 211 28.4
Lsat_1_v5_gn_9_109780 Lactuca sativa HOM05D003465 ORTHO05D004034 1.1e-06 58.2 101 38.6
Prupe.1G435100 Prunus persica HOM05D003792 ORTHO05D003195 1.1e-06 58.2 201 29.4
PGR042G0828 Punica granatum HOM05D003792 ORTHO05D003195 1.1e-06 58.2 253 26.5
TPR.G12693 Trifolium pratense HOM05D003792 ORTHO05D003195 1.4e-06 57.8 236 26.7
BcaC01g00943 Brassica carinata HOM05D009953 ORTHO05D003195 2.4e-06 57.0 183 30.6
BolC9t55450H Brassica oleracea HOM05D003792 ORTHO05D003195 2.4e-06 57.0 236 28.0
TAR628G0921 Trochodendron aralioides HOM05D003792 ORTHO05D003195 2.4e-06 57.0 246 27.6
FvH4_2g05920 Fragaria vesca HOM05D025254 ORTHO05D003195 3.1e-06 56.6 188 31.9
BraA03t15320Z Brassica rapa HOM05D009953 ORTHO05D003195 4.0e-06 56.2 219 29.2
COL.COLO4_32649 Corchorus olitorius HOM05D003465 ORTHO05D004034 4.0e-06 56.2 128 39.1
FAN15G1261 Fragaria x ananassa HOM05D003792 ORTHO05D003195 4.0e-06 56.2 197 31.0
BolC1t00464H Brassica oleracea HOM05D009953 ORTHO05D003195 5.2e-06 55.8 217 28.6
Gohir.D01G007300 Gossypium hirsutum HOM05D003792 ORTHO05D003195 5.2e-06 55.8 57 52.6
Gorai.002G008300 Gossypium raimondii HOM05D003792 ORTHO05D003195 5.2e-06 55.8 222 30.2
GSVIVG01009490001 Vitis vinifera HOM05D003792 ORTHO05D003195 5.2e-06 55.8 211 28.9
Atru.chr5.2692 Acer truncatum HOM05D003792 ORTHO05D003195 6.8e-06 55.5 264 28.8
Actinidia22631 Actinidia chinensis HOM05D003792 ORTHO05D003195 6.8e-06 55.5 241 24.1
Cfa018558 Carpinus fangiana HOM05D000207 ORTHO05D000606 6.8e-06 55.5 245 27.8
Gohir.A01G007200 Gossypium hirsutum HOM05D003792 ORTHO05D003195 6.8e-06 55.5 225 29.8
C04p25040 Brassica napus HOM05D003792 ORTHO05D003195 8.9e-06 55.1 226 27.9
C07p60100 Brassica napus HOM05D009953 ORTHO05D003195 8.9e-06 55.1 190 30.0
BolC4t24005H Brassica oleracea HOM05D003792 ORTHO05D003195 8.9e-06 55.1 226 27.9


User provided reference genes

Program Settings