Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g050055.1 Solanum lycopersicum HOM05D001961 ORTHO05D051028 9.5e-37 156.4 81 100.0
Sopen10g021180 Solanum pennellii HOM05D001961 ORTHO05D051028 2.3e-30 135.2 72 97.2
PGSC0003DMG400013181 Solanum tuberosum HOM05D001961 ORTHO05D002286 3.6e-28 127.9 70 94.3
CAN.G999.31 Capsicum annuum HOM05D001961 ORTHO05D002286 1.3e-22 109.4 72 81.9
Sopen03g032420 Solanum pennellii HOM05D001961 ORTHO05D002286 9.5e-21 103.2 64 87.5
Solyc03g113370.3 Solanum lycopersicum HOM05D001961 ORTHO05D002286 4.7e-20 100.9 64 85.9
Nitab4.5_0004478g0040 Nicotiana tabacum HOM05D001961 ORTHO05D002286 3.7e-17 91.3 68 73.5
Peaxi162Scf00689g00564 Petunia axillaris HOM05D001961 ORTHO05D002286 6.4e-17 90.5 71 71.8
Nitab4.5_0007282g0070 Nicotiana tabacum HOM05D001961 ORTHO05D002286 7.0e-16 87.0 68 70.6
Sopen06g027420 Solanum pennellii HOM05D001961 ORTHO05D002286 1.7e-14 82.4 71 64.8
PGSC0003DMG400033067 Solanum tuberosum HOM05D001961 ORTHO05D002286 5.0e-14 80.9 71 64.8
Solyc06g071120.3 Solanum lycopersicum HOM05D001961 ORTHO05D002286 5.6e-13 77.4 70 62.9
Ciclev10018472m.g Citrus clementina HOM05D001961 ORTHO05D002286 6.2e-12 73.9 71 62.0
Atru.chr9.2337 Acer truncatum HOM05D001961 ORTHO05D002286 2.3e-11 72.0 73 61.6
Cfa019014 Carpinus fangiana HOM05D001961 ORTHO05D002286 6.8e-11 70.5 74 56.8
Nitab4.5_0000909g0070 Nicotiana tabacum HOM05D001961 ORTHO05D002286 6.8e-11 70.5 71 62.0
Manes.14G073702 Manihot esculenta HOM05D001961 ORTHO05D002286 8.9e-11 70.1 67 62.7
Nitab4.5_0000003g0050 Nicotiana tabacum HOM05D001961 ORTHO05D002286 1.5e-10 69.3 71 62.0
Gohir.D03G090700 Gossypium hirsutum HOM05D001961 ORTHO05D002286 3.4e-10 68.2 69 62.3
Gorai.003G070500 Gossypium raimondii HOM05D001961 ORTHO05D002286 3.4e-10 68.2 69 62.3
Haze_07394 Corylus avellana HOM05D001961 ORTHO05D002286 5.8e-10 67.4 74 55.4
Dinv38651 Davidia involucrata HOM05D001961 ORTHO05D002286 1.7e-09 65.9 73 56.2
Gohir.A03G064400 Gossypium hirsutum HOM05D001961 ORTHO05D002286 1.7e-09 65.9 69 59.4
Dinv19903 Davidia involucrata HOM05D001961 ORTHO05D002286 2.2e-09 65.5 73 56.2
Lj9C457G12 Lonicera japonica HOM05D001961 ORTHO05D002286 1.1e-08 63.2 72 56.9
DCAR_021541 Daucus carota HOM05D001961 ORTHO05D002286 1.4e-08 62.8 48 68.8
ClCG06G016460 Citrullus lanatus HOM05D001961 ORTHO05D002286 2.4e-08 62.0 48 68.8
unitig_744.g24389 Utricularia gibba HOM05D001961 ORTHO05D002286 2.4e-08 62.0 63 61.9
Ca_21858_v3 Cicer arietinum L. HOM05D001961 ORTHO05D002286 5.4e-08 60.8 74 52.7
TAR374G1240 Trochodendron aralioides HOM05D001961 ORTHO05D002286 5.4e-08 60.8 54 63.0
Dinv33705 Davidia involucrata HOM05D001961 ORTHO05D002286 9.2e-08 60.1 72 52.8
Medtr4g107470 Medicago truncatula HOM05D001961 ORTHO05D002286 9.2e-08 60.1 80 51.2
PSO832G1192 Papaver somniferum HOM05D001961 ORTHO05D002286 9.2e-08 60.1 52 65.4
TPR.G38388 Trifolium pratense HOM05D001961 ORTHO05D002286 9.2e-08 60.1 74 52.7
Gorai.007G034900 Gossypium raimondii HOM05D001961 ORTHO05D002286 1.6e-07 59.3 48 68.8
Psat4g054160 Pisum sativum HOM05D001961 ORTHO05D002286 2.1e-07 58.9 74 50.0
CsaV3_1G002070 Cucumis sativus L. HOM05D001961 ORTHO05D002286 2.7e-07 58.5 74 51.4
Gohir.A11G028810 Gossypium hirsutum HOM05D001961 ORTHO05D002286 3.5e-07 58.2 54 64.8
Manes.06G097300 Manihot esculenta HOM05D001961 ORTHO05D002286 4.6e-07 57.8 75 53.3
PSO591G0439 Papaver somniferum HOM05D001961 ORTHO05D002286 4.6e-07 57.8 44 70.5
Nn3g17102 Nelumbo nucifera HOM05D001961 ORTHO05D002286 7.8e-07 57.0 39 74.4
Cc04_g15870 Coffea canephora HOM05D001961 ORTHO05D002286 1.0e-06 56.6 70 55.7
Lj1g0021908 Lotus japonicus HOM05D001961 ORTHO05D002286 1.3e-06 56.2 53 58.5
RcHm_v2.0_Chr7g0180371 Rosa chinensis HOM05D001961 ORTHO05D002286 1.3e-06 56.2 50 66.0
Zm00001eb005070 Zea mays HOM05D001961 ORTHO05D002286 1.3e-06 56.2 72 48.6
EL10Ac5g10921 Beta vulgaris HOM05D001961 ORTHO05D002286 1.7e-06 55.8 72 55.6
QL10p014874 Quercus lobata HOM05D001961 ORTHO05D002286 1.7e-06 55.8 72 50.0
AT3G47890 Arabidopsis thaliana HOM05D001961 ORTHO05D002286 2.3e-06 55.5 42 69.0
Gohir.D11G032100 Gossypium hirsutum HOM05D001961 ORTHO05D002286 3.0e-06 55.1 54 63.0
Cc04_g15890 Coffea canephora HOM05D001961 ORTHO05D002286 3.9e-06 54.7 70 54.3
SalBow5G1786 Salvia bowleyana HOM05D001961 ORTHO05D002286 3.9e-06 54.7 56 58.9
Thhalv10010060m.g Eutrema salsugineum HOM05D001961 ORTHO05D002286 5.1e-06 54.3 42 69.0
Oeu039544.2 Olea europaea HOM05D001961 ORTHO05D002286 5.1e-06 54.3 70 52.9
BcaB02g10685 Brassica carinata HOM05D001961 ORTHO05D002286 6.6e-06 53.9 42 69.0


User provided reference genes

Program Settings