Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g049910.2 Solanum lycopersicum HOM05D002207 ORTHO05D002250 6.9e-50 200.3 98 100.0
Solyc10g049970.2 Solanum lycopersicum HOM05D002207 ORTHO05D002250 2.1e-14 82.4 40 95.0
Sopen10g020100 Solanum pennellii HOM05D002207 ORTHO05D002250 2.1e-14 82.4 40 95.0
PGSC0003DMG400023115 Solanum tuberosum HOM05D002207 ORTHO05D002250 2.1e-14 82.4 40 95.0
CAN.G193.29 Capsicum annuum HOM05D002207 ORTHO05D002250 1.5e-12 76.3 39 84.6
Peaxi162Scf00003g02427 Petunia axillaris HOM05D002207 ORTHO05D002250 3.4e-12 75.1 40 85.0
Nitab4.5_0011730g0010 Nicotiana tabacum HOM05D002207 ORTHO05D002250 7.5e-12 73.9 40 85.0
Sopen10g019960 Solanum pennellii HOM05D002207 ORTHO05D002250 4.1e-10 68.2 44 77.3
Thecc.02G106400 Theobroma cacao HOM05D002207 ORTHO05D002250 2.9e-08 62.0 40 65.0
Nitab4.5_0001185g0080 Nicotiana tabacum HOM05D001181 ORTHO05D002250 3.8e-08 61.6 32 87.5
PGSC0003DMG401023116 Solanum tuberosum HOM05D002207 ORTHO05D002250 3.8e-08 61.6 61 60.7
Atru.chr5.2589 Acer truncatum HOM05D002207 ORTHO05D002250 5.0e-08 61.2 42 61.9
Gohir.D12G022900 Gossypium hirsutum HOM05D002207 ORTHO05D002250 5.0e-08 61.2 37 70.3
Gohir.D13G041700 Gossypium hirsutum HOM05D002207 ORTHO05D002250 5.0e-08 61.2 40 65.0
Gorai.008G023400 Gossypium raimondii HOM05D002207 ORTHO05D002250 5.0e-08 61.2 37 70.3
Gorai.013G046600 Gossypium raimondii HOM05D002207 ORTHO05D002250 5.0e-08 61.2 40 65.0
Duzib052G0320 Durio zibethinus HOM05D002207 ORTHO05D002250 6.5e-08 60.8 40 65.0
Duzib132G1209 Durio zibethinus HOM05D002207 ORTHO05D002250 6.5e-08 60.8 40 65.0
Potri.001G301600 Populus trichocarpa HOM05D002207 ORTHO05D002250 6.5e-08 60.8 40 67.5
Potri.009G097201 Populus trichocarpa HOM05D002207 ORTHO05D002250 6.5e-08 60.8 40 67.5
Actinidia00417 Actinidia chinensis HOM05D002207 ORTHO05D002250 1.1e-07 60.1 40 65.0
SMO351G0380 Selaginella moellendorffii HOM05D002207 ORTHO05D002250 1.1e-07 60.1 37 73.0
QL11p034099 Quercus lobata HOM05D002207 ORTHO05D002250 1.5e-07 59.7 39 64.1
Sabra16G0189600 Salix brachista HOM05D002207 ORTHO05D002250 1.5e-07 59.7 40 67.5
Gohir.A13G043200 Gossypium hirsutum HOM05D002207 ORTHO05D002250 1.9e-07 59.3 40 62.5
Aqoxy6G02889 Aquilegia oxysepala HOM05D002207 ORTHO05D002250 3.2e-07 58.5 40 62.5
Gohir.A13G045100 Gossypium hirsutum HOM05D002207 ORTHO05D002250 3.2e-07 58.5 37 67.6
Gohir.D13G041600 Gossypium hirsutum HOM05D002207 ORTHO05D002250 3.2e-07 58.5 37 67.6
Gorai.013G046500 Gossypium raimondii HOM05D002207 ORTHO05D002250 3.2e-07 58.5 37 67.6
Prupe.8G132800 Prunus persica HOM05D002207 ORTHO05D002250 3.2e-07 58.5 40 62.5
Thecc.02G106300 Theobroma cacao HOM05D002207 ORTHO05D002250 3.2e-07 58.5 37 67.6
TAR376G0083 Trochodendron aralioides HOM05D002207 ORTHO05D002250 3.2e-07 58.5 40 62.5
FvH4_2g05380 Fragaria vesca HOM05D002207 ORTHO05D002250 4.2e-07 58.2 40 62.5
FAN15G2920 Fragaria x ananassa HOM05D002207 ORTHO05D002250 4.2e-07 58.2 40 62.5
FAN20G2386 Fragaria x ananassa HOM05D002207 ORTHO05D002250 4.2e-07 58.2 40 62.5
FAN24G2839 Fragaria x ananassa HOM05D002207 ORTHO05D002250 4.2e-07 58.2 40 62.5
Rhsim11G0160800 Rhododendron simsii HOM05D002207 ORTHO05D002250 4.2e-07 58.2 40 62.5
RcHm_v2.0_Chr6g0255671 Rosa chinensis HOM05D002207 ORTHO05D002250 4.2e-07 58.2 40 62.5
ATR0724G073 Amborella trichopoda HOM05D002207 ORTHO05D002250 5.5e-07 57.8 40 60.0
MSTRG.16719 Avicennia marina HOM05D002207 ORTHO05D002250 5.5e-07 57.8 40 62.5
CANSAT25G1013 Cannabis sativa HOM05D002207 ORTHO05D002250 5.5e-07 57.8 40 65.0
Cc02_g19150 Coffea canephora HOM05D002207 ORTHO05D002250 5.5e-07 57.8 40 62.5
Glyma.11G000800 Glycine max HOM05D002207 ORTHO05D002250 5.5e-07 57.8 40 62.5
Manes.07G067900 Manihot esculenta HOM05D002207 ORTHO05D002250 5.5e-07 57.8 42 54.8
SalBow6G3559 Salvia bowleyana HOM05D002207 ORTHO05D002250 5.5e-07 57.8 40 65.0
Sed0016071 Sechium edule HOM05D002207 ORTHO05D002250 5.5e-07 57.8 42 61.9
GSVIVG01003170001 Vitis vinifera HOM05D002207 ORTHO05D002250 5.5e-07 57.8 41 58.5
ATR0827G110 Amborella trichopoda HOM05D002207 ORTHO05D002250 7.2e-07 57.4 40 60.0
BcaNung00622 Brassica carinata HOM05D002207 ORTHO05D002250 7.2e-07 57.4 42 61.9
A01p03370 Brassica napus HOM05D002207 ORTHO05D002250 7.2e-07 57.4 42 61.9
C01p03680 Brassica napus HOM05D002207 ORTHO05D002250 7.2e-07 57.4 42 61.9
BolC1t00360H Brassica oleracea HOM05D002207 ORTHO05D002250 7.2e-07 57.4 42 61.9
BraA01t00323Z Brassica rapa HOM05D002207 ORTHO05D002250 7.2e-07 57.4 42 61.9
Potri.009G097300 Populus trichocarpa HOM05D002207 ORTHO05D002250 7.2e-07 57.4 40 60.0
Sabra09G0074800 Salix brachista HOM05D002207 ORTHO05D002250 7.2e-07 57.4 40 60.0
Sp7g32990 Schrenkiella parvula HOM05D002207 ORTHO05D002250 7.2e-07 57.4 42 61.9
unitig_0.g842 Utricularia gibba HOM05D002207 ORTHO05D002250 7.2e-07 57.4 37 67.6
Aqoxy5G01159 Aquilegia oxysepala HOM05D002207 ORTHO05D002250 9.4e-07 57.0 40 65.0
DCAR_001639 Daucus carota HOM05D002207 ORTHO05D002250 9.4e-07 57.0 40 62.5
Migut.B00378 Erythranthe guttata HOM05D002207 ORTHO05D002250 9.4e-07 57.0 40 62.5
Lj5A213G83 Lonicera japonica HOM05D002207 ORTHO05D002250 9.4e-07 57.0 40 65.0
CAN.G1231.14 Capsicum annuum HOM05D002207 ORTHO05D002250 1.2e-06 56.6 40 62.5
CiPaw.05G010100 Carya illinoinensis HOM05D002207 ORTHO05D002250 1.2e-06 56.6 40 60.0
CsaV3_7G008280 Cucumis sativus L. HOM05D002207 ORTHO05D002250 1.2e-06 56.6 40 62.5
PSO541G3404 Papaver somniferum HOM05D002207 ORTHO05D002250 1.2e-06 56.6 40 62.5
PGSC0003DMG402023116 Solanum tuberosum HOM05D002207 ORTHO05D002250 1.2e-06 56.6 40 57.5
Zm00001eb206470 Zea mays HOM05D002207 ORTHO05D002250 1.2e-06 56.6 40 62.5
CARHR243520 Cardamine hirsuta HOM05D002207 ORTHO05D002250 1.6e-06 56.2 39 64.1
MELO3C018478.2 Cucumis melo HOM05D002207 ORTHO05D002250 1.6e-06 56.2 42 59.5
MELO3C018479.2 Cucumis melo HOM05D002207 ORTHO05D002250 1.6e-06 56.2 40 62.5
CsaV3_7G008290 Cucumis sativus L. HOM05D002207 ORTHO05D002250 1.6e-06 56.2 42 59.5
Eucgr.E02953 Eucalyptus grandis HOM05D002207 ORTHO05D002250 1.6e-06 56.2 40 62.5
PGR042G1755 Punica granatum HOM05D002207 ORTHO05D002250 1.6e-06 56.2 40 62.5
RcHm_v2.0_Chr6g0255661 Rosa chinensis HOM05D002207 ORTHO05D002250 1.6e-06 56.2 40 62.5
Solyc01g107700.4 Solanum lycopersicum HOM05D002207 ORTHO05D002250 1.6e-06 56.2 40 62.5
Sopen01g049880 Solanum pennellii HOM05D002207 ORTHO05D002250 1.6e-06 56.2 40 62.5
AT1G44542 Arabidopsis thaliana HOM05D002207 ORTHO05D002250 2.1e-06 55.8 40 62.5
ClCG02G006240 Citrullus lanatus HOM05D002207 ORTHO05D002250 2.1e-06 55.8 41 58.5
Eucgr.E02952 Eucalyptus grandis HOM05D002207 ORTHO05D002250 2.1e-06 55.8 40 62.5
HanXRQChr13g0412301 Helianthus annuus HOM05D002207 ORTHO05D002250 2.1e-06 55.8 40 60.0
RcHm_v2.0_Chr6g0255711 Rosa chinensis HOM05D002207 ORTHO05D002250 2.1e-06 55.8 52 50.0
SEGI_40227 Sequoiadendron giganteum HOM05D002207 ORTHO05D002250 2.1e-06 55.8 40 60.0
TWI75G0770 Tripterygium wilfordii HOM05D002207 ORTHO05D002250 2.1e-06 55.8 40 60.0
CiPaw.05G010200 Carya illinoinensis HOM05D002207 ORTHO05D002250 2.7e-06 55.5 40 60.0
Duzib132G0876 Durio zibethinus HOM05D002207 ORTHO05D002250 2.7e-06 55.5 37 64.9
Glyma.10G263300 Glycine max HOM05D002207 ORTHO05D002250 2.7e-06 55.5 40 60.0
Glyma.20G126900 Glycine max HOM05D002207 ORTHO05D002250 2.7e-06 55.5 40 60.0
Gorai.002G009000 Gossypium raimondii HOM05D002207 ORTHO05D002250 2.7e-06 55.5 40 60.0
MD05G1087600 Malus domestica HOM05D002207 ORTHO05D002250 2.7e-06 55.5 40 60.0
Medtr1g107525 Medicago truncatula HOM05D002207 ORTHO05D002250 2.7e-06 55.5 41 56.1
Os06g0638700 Oryza sativa ssp. japonica HOM05D002207 ORTHO05D002250 2.7e-06 55.5 52 50.0
Potri.001G301501 Populus trichocarpa HOM05D002207 ORTHO05D002250 2.7e-06 55.5 40 60.0
Prupe.8G133000 Prunus persica HOM05D002207 ORTHO05D002250 2.7e-06 55.5 44 56.8
PGR042G1326 Punica granatum HOM05D002207 ORTHO05D002250 2.7e-06 55.5 40 60.0
TWI79G0816 Tripterygium wilfordii HOM05D002207 ORTHO05D002250 2.7e-06 55.5 40 60.0
TAR376G1158 Trochodendron aralioides HOM05D002207 ORTHO05D002250 2.7e-06 55.5 40 60.0
vmacro02009 Vaccinium macrocarpon HOM05D002207 ORTHO05D002250 2.7e-06 55.5 40 60.0
arahy.Tifrunner.gnm1.ann1.F6J9N2 Arachis hypogaea HOM05D002207 ORTHO05D002250 3.6e-06 55.1 40 60.0
arahy.Tifrunner.gnm1.ann1.YC4BVH Arachis hypogaea HOM05D002207 ORTHO05D002250 3.6e-06 55.1 40 60.0
Carub.0007s0509 Capsella rubella HOM05D002207 ORTHO05D002250 3.6e-06 55.1 42 59.5
Cfa004567 Carpinus fangiana HOM05D002207 ORTHO05D002250 3.6e-06 55.1 40 60.0
CiPaw.05G010300 Carya illinoinensis HOM05D002207 ORTHO05D002250 3.6e-06 55.1 40 60.0
COL.COLO4_32607 Corchorus olitorius HOM05D002207 ORTHO05D002250 3.6e-06 55.1 110 33.6
Duzib052G0980 Durio zibethinus HOM05D002207 ORTHO05D002250 3.6e-06 55.1 40 60.0
Thhalv10026013m.g Eutrema salsugineum HOM05D002207 ORTHO05D002250 3.6e-06 55.1 40 60.0
FAN15G3663 Fragaria x ananassa HOM05D002207 ORTHO05D002250 3.6e-06 55.1 40 60.0
HanXRQChr13g0412381 Helianthus annuus HOM05D002207 ORTHO05D002250 3.6e-06 55.1 40 60.0
Manes.10G077303 Manihot esculenta HOM05D002207 ORTHO05D002250 3.6e-06 55.1 40 60.0
Nitab4.5_0002815g0120 Nicotiana tabacum HOM05D002207 ORTHO05D002250 3.6e-06 55.1 40 60.0
Nitab4.5_0005392g0100 Nicotiana tabacum HOM05D002207 ORTHO05D002250 3.6e-06 55.1 40 60.0
Prupe.8G133400 Prunus persica HOM05D002207 ORTHO05D002250 3.6e-06 55.1 40 60.0
RcHm_v2.0_Chr6g0255621 Rosa chinensis HOM05D002207 ORTHO05D002250 3.6e-06 55.1 40 60.0
RcHm_v2.0_Chr6g0255631 Rosa chinensis HOM05D002207 ORTHO05D002250 3.6e-06 55.1 40 60.0
Sed0024993 Sechium edule HOM05D002207 ORTHO05D002250 3.6e-06 55.1 42 57.1
THA.LOC104807249 Tarenaya hassleriana HOM05D002207 ORTHO05D002250 3.6e-06 55.1 40 60.0
Thecc.02G106500 Theobroma cacao HOM05D002207 ORTHO05D002250 3.6e-06 55.1 40 60.0
unitig_0.g868 Utricularia gibba HOM05D002207 ORTHO05D002250 3.6e-06 55.1 37 62.2
Atru.chr5.2574 Acer truncatum HOM05D002207 ORTHO05D002250 4.7e-06 54.7 40 57.5
BcaNung00618 Brassica carinata HOM05D002207 ORTHO05D002250 4.7e-06 54.7 42 59.5
Duzib132G0742 Durio zibethinus HOM05D002207 ORTHO05D002250 4.7e-06 54.7 40 60.0
Lsat_1_v5_gn_5_61981 Lactuca sativa HOM05D002207 ORTHO05D002250 4.7e-06 54.7 40 60.0
Sp7g31940 Schrenkiella parvula HOM05D002207 ORTHO05D002250 4.7e-06 54.7 40 60.0
Sed0021372 Sechium edule HOM05D002207 ORTHO05D002250 4.7e-06 54.7 40 60.0
AL1G52360 Arabidopsis lyrata HOM05D002207 ORTHO05D002250 6.1e-06 54.3 40 60.0
Glyma.10G263400 Glycine max HOM05D002207 ORTHO05D002250 6.1e-06 54.3 39 59.0
Glyma.20G126800 Glycine max HOM05D002207 ORTHO05D002250 6.1e-06 54.3 39 59.0
Os08g0319900 Oryza sativa ssp. japonica HOM05D002207 ORTHO05D002250 6.1e-06 54.3 40 57.5
Os09g0110300 Oryza sativa ssp. japonica HOM05D002207 ORTHO05D002250 6.1e-06 54.3 52 48.1
Peaxi162Scf00016g02254 Petunia axillaris HOM05D002207 ORTHO05D002250 6.1e-06 54.3 39 59.0
Potri.001G301700 Populus trichocarpa HOM05D002207 ORTHO05D002250 6.1e-06 54.3 40 60.0
QL11p034113 Quercus lobata HOM05D002207 ORTHO05D002250 6.1e-06 54.3 38 55.3
CSS0005589 Camellia sinensis var. sinensis HOM05D002207 ORTHO05D002250 8.0e-06 53.9 40 60.0
Thhalv10025961m.g Eutrema salsugineum HOM05D002207 ORTHO05D002250 8.0e-06 53.9 39 61.5
PSO675G6309 Papaver somniferum HOM05D002207 ORTHO05D002250 8.0e-06 53.9 40 60.0
Prupe.8G133300 Prunus persica HOM05D002207 ORTHO05D002250 8.0e-06 53.9 40 60.0
QL11p034091 Quercus lobata HOM05D002207 ORTHO05D002250 8.0e-06 53.9 39 56.4
QL93p0189_0042 Quercus lobata HOM05D002207 ORTHO05D002250 8.0e-06 53.9 39 56.4
VMungo0720G2683 Vigna mungo HOM05D002207 ORTHO05D002250 8.0e-06 53.9 37 64.9


User provided reference genes

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