Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g049340.1 Solanum lycopersicum HOM05D011121 ORTHO05D018079 8.1e-126 453.8 229 100.0
Sopen10g019830 Solanum pennellii HOM05D000002 ORTHO05D018079 8.7e-104 380.6 228 88.2
Sopen09g012490 Solanum pennellii HOM05D011121 ORTHO05D018079 6.3e-46 188.3 147 71.4
Sopen03g013960 Solanum pennellii HOM05D000002 ORTHO05D000001 4.0e-40 169.1 128 75.0
Sopen03g013150 Solanum pennellii HOM05D000004 ORTHO05D000002 9.5e-34 147.9 210 42.9
Solyc01g009980.1 Solanum lycopersicum HOM05D011121 ORTHO05D018079 2.5e-26 123.2 95 68.4
Sopen09g011010 Solanum pennellii HOM05D011121 ORTHO05D018873 5.6e-26 122.1 193 40.9
Sopen08g006650 Solanum pennellii HOM05D000014 ORTHO05D000016 2.1e-20 103.6 75 74.7
TWI75G1210 Tripterygium wilfordii HOM05D011121 ORTHO05D018873 7.8e-20 101.7 243 34.2
Sopen07g022910 Solanum pennellii HOM05D011121 ORTHO05D018873 1.5e-18 97.4 175 40.6
TAR042G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 1.4e-16 90.9 224 31.7
Peaxi162Scf00031g00092 Petunia axillaris HOM05D011121 ORTHO05D018079 4.4e-15 85.9 108 40.7
TAR084G0004 Trochodendron aralioides HOM05D001435 ORTHO05D001304 7.6e-15 85.1 228 30.7
Hma1.2p1_0948F.1_g240460 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.9e-14 83.2 244 28.3
Rhsim05G0196600 Rhododendron simsii HOM05D000002 ORTHO05D000001 3.8e-14 82.8 226 29.2
Hma1.2p1_0020F.1_g014040 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 6.4e-14 82.0 236 27.1
Atru.chr11.277 Acer truncatum HOM05D000002 ORTHO05D000001 3.2e-13 79.7 204 29.4
Solyc05g024330.1 Solanum lycopersicum HOM05D011121 ORTHO05D018079 7.1e-13 78.6 110 47.3
TAR386G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 7.1e-13 78.6 234 29.1
QL08p061042 Quercus lobata HOM05D000002 ORTHO05D000001 2.7e-12 76.6 228 32.5
RcHm_v2.0_Chr5g0032551 Rosa chinensis HOM05D000002 ORTHO05D000001 4.6e-12 75.9 207 35.7
RcHm_v2.0_Chr7g0190501 Rosa chinensis HOM05D000002 ORTHO05D000001 6.0e-12 75.5 222 28.4
CAN.G2055.2 Capsicum annuum HOM05D011121 ORTHO05D018873 7.8e-12 75.1 57 61.4
TAR650G0001 Trochodendron aralioides HOM05D000067 ORTHO05D000001 7.8e-12 75.1 196 30.1
RcHm_v2.0_Chr2g0129181 Rosa chinensis HOM05D000002 ORTHO05D000001 1.3e-11 74.3 220 29.1
CAN.G624.9 Capsicum annuum HOM05D011121 ORTHO05D018873 2.3e-11 73.6 46 67.4
QL04p024973 Quercus lobata HOM05D000002 ORTHO05D000001 5.1e-11 72.4 221 28.5
CANSAT21G1279 Cannabis sativa HOM05D000002 ORTHO05D000001 6.6e-11 72.0 97 43.3
RcHm_v2.0_Chr2g0124571 Rosa chinensis HOM05D000011 ORTHO05D000157 6.6e-11 72.0 206 35.0
Hma1.2p1_0862F.1_g229960 Hydrangea macrophylla HOM05D004993 ORTHO05D008532 1.1e-10 71.2 242 29.8
Rhsim05G0026100 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.5e-10 70.9 229 26.2
TWI23G0778 Tripterygium wilfordii HOM05D011121 ORTHO05D018873 1.5e-10 70.9 103 46.6
Rhsim02G0228300 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.9e-10 70.5 225 29.3
MD17G1115400 Malus domestica HOM05D000002 ORTHO05D000001 4.3e-10 69.3 233 29.2
Solyc06g033780.1 Solanum lycopersicum HOM05D011121 ORTHO05D018079 7.3e-10 68.6 92 48.9
CANSAT54G2325 Cannabis sativa HOM05D000002 ORTHO05D000001 9.6e-10 68.2 92 40.2
MD11G1146000 Malus domestica HOM05D000002 ORTHO05D000001 1.3e-09 67.8 240 25.4
RcHm_v2.0_Chr3g0465981 Rosa chinensis HOM05D000002 ORTHO05D000001 1.6e-09 67.4 219 28.3
Hma1.2p1_0001F.1_g001500 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.1e-09 67.0 237 27.0
QL08p052300 Quercus lobata HOM05D000002 ORTHO05D000001 2.1e-09 67.0 93 39.8
FvH4_7g19191 Fragaria vesca HOM05D000002 ORTHO05D000001 3.6e-09 66.2 211 31.8
PGR102G3059 Punica granatum HOM05D000002 ORTHO05D000001 3.6e-09 66.2 224 27.7
Hma1.2p1_0000F.1_g000910 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 4.8e-09 65.9 219 26.0
MD12G1020900 Malus domestica HOM05D000103 ORTHO05D000001 4.8e-09 65.9 245 28.2
MD09G1100700 Malus domestica HOM05D000002 ORTHO05D000001 6.2e-09 65.5 225 26.7
CANSAT25G3406 Cannabis sativa HOM05D024232 ORTHO05D000001 1.1e-08 64.7 73 47.9
MD02G1010600 Malus domestica HOM05D000002 ORTHO05D000001 1.8e-08 63.9 227 28.6
Nitab4.5_0000164g0090 Nicotiana tabacum HOM05D002833 ORTHO05D003210 1.8e-08 63.9 225 26.7
CSS0034832 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.4e-08 63.5 198 30.8
CANSAT25G2670 Cannabis sativa HOM05D000002 ORTHO05D000001 2.4e-08 63.5 121 35.5
GSVIVG01036343001 Vitis vinifera HOM05D000067 ORTHO05D000097 2.4e-08 63.5 203 28.1
Atru.chr2.1455 Acer truncatum HOM05D000002 ORTHO05D000001 4.0e-08 62.8 96 36.5
Psat4g210200 Pisum sativum HOM05D018610 ORTHO05D000001 6.9e-08 62.0 202 29.2
Hma1.2p1_0565F.1_g179600 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 9.0e-08 61.6 222 29.3
Hma1.2p1_1397F.1_g280780 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.2e-07 61.2 234 27.8
Lj2C1206G8 Lonicera japonica HOM05D014274 ORTHO05D000001 1.2e-07 61.2 234 27.8
HanXRQChr15g0476521 Helianthus annuus HOM05D000002 ORTHO05D000001 1.5e-07 60.8 215 28.8
CANSAT64G1606 Cannabis sativa HOM05D000002 ORTHO05D000001 2.6e-07 60.1 86 34.9
MD12G1231800 Malus domestica HOM05D000002 ORTHO05D000001 3.4e-07 59.7 241 26.6
FvH4_6g20601 Fragaria vesca HOM05D000002 ORTHO05D000001 4.4e-07 59.3 210 26.7
MD00G1084700 Malus domestica HOM05D000002 ORTHO05D000001 4.4e-07 59.3 197 28.4
Prupe.8G084200 Prunus persica HOM05D000002 ORTHO05D000001 4.4e-07 59.3 239 27.6
Atru.chr2.1090 Acer truncatum HOM05D000034 ORTHO05D000001 5.8e-07 58.9 93 39.8
Aa31LG1G6100 Aethionema arabicum HOM05D000002 ORTHO05D000001 5.8e-07 58.9 206 28.2
Psat1g047720 Pisum sativum HOM05D000002 ORTHO05D000001 5.8e-07 58.9 97 36.1
SGA_v2.0_scaffold400G50849 Striga asiatica HOM05D000002 ORTHO05D000001 5.8e-07 58.9 93 37.6
CSS0041353 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.6e-07 58.5 197 26.9
Sabra18G0040600 Salix brachista HOM05D000002 ORTHO05D010776 7.6e-07 58.5 189 24.9
Sabra18G0120700 Salix brachista HOM05D000002 ORTHO05D000001 7.6e-07 58.5 208 29.8
Sed0000135 Sechium edule HOM05D000002 ORTHO05D000001 7.6e-07 58.5 203 27.1
CSS0014384 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.9e-07 58.2 206 25.7
COL.COLO4_33905 Corchorus olitorius HOM05D000002 ORTHO05D000001 9.9e-07 58.2 225 24.4
Hma1.2p1_0939F.1_g239370 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 9.9e-07 58.2 219 27.9
Rhsim03G0160800 Rhododendron simsii HOM05D029833 ORTHO05D000001 9.9e-07 58.2 218 28.4
Peaxi162Scf00202g00046 Petunia axillaris HOM05D002833 ORTHO05D003210 1.3e-06 57.8 195 26.2
TAR301G0003 Trochodendron aralioides HOM05D000002 ORTHO05D000001 1.3e-06 57.8 148 30.4
Sopen07g019840 Solanum pennellii HOM05D000002 ORTHO05D000001 1.7e-06 57.4 233 28.3
Hma1.2p1_0233F.1_g098110 Hydrangea macrophylla HOM05D014274 ORTHO05D024986 2.2e-06 57.0 117 35.9
Hma1.2p1_1307F.1_g274730 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.2e-06 57.0 205 27.3
Nn1g06783 Nelumbo nucifera HOM05D023713 ORTHO05D000001 2.9e-06 56.6 95 34.7
ClCG10G007770 Citrullus lanatus HOM05D000034 ORTHO05D000001 4.9e-06 55.8 99 34.3
MD05G1320000 Malus domestica HOM05D000002 ORTHO05D000001 4.9e-06 55.8 215 25.6
Nn2g11549 Nelumbo nucifera HOM05D000002 ORTHO05D000001 4.9e-06 55.8 86 34.9
GSVIVG01016108001 Vitis vinifera HOM05D000002 ORTHO05D000001 4.9e-06 55.8 94 37.2
Migut.G00019 Erythranthe guttata HOM05D000002 ORTHO05D000001 6.4e-06 55.5 101 39.6
Hma1.2p1_0602F.1_g187610 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 6.4e-06 55.5 198 26.8
SEGI_13448 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 6.4e-06 55.5 91 35.2
SGA_v2.0_scaffold2G01302 Striga asiatica HOM05D000033 ORTHO05D001614 8.4e-06 55.1 203 26.1
TPR.G34891 Trifolium pratense HOM05D004978 ORTHO05D005621 8.4e-06 55.1 88 33.0


User provided reference genes

Program Settings