Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 1.0e-268 929.5 462 100.0
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 1.5e-259 899.0 449 99.3
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 6.6e-252 873.6 449 96.4
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 9.7e-203 710.3 441 80.0
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 6.9e-201 704.1 458 77.9
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 1.2e-200 703.4 458 76.4
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 1.0e-199 700.3 460 76.1
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 1.3e-194 683.3 441 76.4
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.0e-191 673.7 446 77.8
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 1.8e-185 652.9 454 72.2
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 1.7e-183 646.4 432 73.4
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 1.7e-183 646.4 458 71.6
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 2.2e-183 646.0 450 71.1
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 1.5e-182 643.3 454 72.0
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 8.8e-180 634.0 457 70.0
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 4.4e-179 631.7 457 70.5
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 5.7e-179 631.3 439 71.8
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 7.5e-179 630.9 450 70.2
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 7.5e-179 630.9 454 70.3
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 1.7e-178 629.8 439 71.1
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 3.7e-178 628.6 450 70.2
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 3.7e-178 628.6 454 69.8
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 3.7e-178 628.6 458 67.9
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 4.8e-178 628.2 455 69.7
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 8.3e-178 627.5 453 69.5
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 1.1e-177 627.1 451 68.7
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 1.4e-177 626.7 443 71.6
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 4.1e-177 625.2 461 69.4
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 9.1e-177 624.0 460 71.1
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 1.6e-176 623.2 436 70.4
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 1.6e-176 623.2 454 69.8
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 1.6e-176 623.2 454 69.8
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 2.0e-176 622.9 454 70.0
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 3.5e-176 622.1 454 69.8
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 4.5e-176 621.7 454 69.2
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 5.9e-176 621.3 455 69.5
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.7e-175 619.8 454 68.9
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 5.0e-175 618.2 454 68.7
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 6.5e-175 617.8 455 69.5
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 8.5e-175 617.5 438 70.8
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 1.1e-174 617.1 416 72.4
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 1.1e-174 617.1 450 68.2
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 1.5e-174 616.7 450 68.0
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 1.9e-174 616.3 436 70.6
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 1.9e-174 616.3 440 68.2
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.9e-174 616.3 454 68.5
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 4.2e-174 615.1 454 68.7
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 7.2e-174 614.4 424 70.8
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 7.2e-174 614.4 452 68.6
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 7.2e-174 614.4 452 68.6
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 9.4e-174 614.0 422 70.4
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 9.4e-174 614.0 450 67.8
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 1.6e-173 613.2 445 68.8
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.1e-173 612.8 424 70.8
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 3.6e-173 612.1 429 69.5
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 3.6e-173 612.1 420 69.8
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 4.7e-173 611.7 460 67.8
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 8.0e-173 610.9 454 66.7
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 1.4e-172 610.1 455 67.7
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 1.4e-172 610.1 446 67.7
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 1.8e-172 609.8 443 68.2
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 1.8e-172 609.8 443 68.2
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 1.8e-172 609.8 452 67.5
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 1.8e-172 609.8 431 70.3
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 3.0e-172 609.0 455 67.0
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 4.0e-172 608.6 443 67.9
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 4.0e-172 608.6 453 67.1
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 5.2e-172 608.2 446 67.3
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 5.2e-172 608.2 424 70.5
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 5.2e-172 608.2 437 69.1
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 8.8e-172 607.4 455 68.4
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 8.8e-172 607.4 419 71.1
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 8.8e-172 607.4 454 67.0
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 1.5e-171 606.7 456 67.5
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 2.0e-171 606.3 443 67.7
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 2.0e-171 606.3 453 68.9
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 2.6e-171 605.9 443 67.7
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 3.4e-171 605.5 460 66.7
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 4.9e-170 601.7 454 67.0
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 1.4e-169 600.1 404 72.5
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 1.8e-169 599.7 454 66.7
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.8e-169 599.7 440 67.7
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 3.1e-169 599.0 440 67.7
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 9.2e-169 597.4 418 69.1
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 9.2e-169 597.4 456 66.4
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 4.5e-168 595.1 455 65.9
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 7.7e-168 594.3 456 66.2
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 3.8e-167 592.0 430 68.6
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 1.9e-166 589.7 429 69.9
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 1.9e-166 589.7 467 65.3
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 5.6e-166 588.2 460 64.8
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 9.5e-166 587.4 449 65.7
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 1.6e-165 586.6 442 65.8
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 2.8e-165 585.9 571 55.7
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 3.6e-165 585.5 477 63.5
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 6.1e-165 584.7 456 66.9
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 1.8e-164 583.2 461 66.4
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 1.8e-164 583.2 466 64.8
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 2.3e-164 582.8 435 69.2
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 8.9e-164 580.9 467 65.3
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 1.5e-163 580.1 460 66.1
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 2.6e-163 579.3 421 69.6
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 1.7e-162 576.6 469 64.4
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 1.7e-162 576.6 495 60.2
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 2.9e-162 575.9 449 64.1
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 3.7e-162 575.5 464 63.6
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 1.1e-161 573.9 467 64.7
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 4.1e-161 572.0 466 64.6
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 1.7e-159 566.6 470 63.2
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 1.1e-158 563.9 392 71.2
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 3.3e-158 562.4 449 62.4
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 8.9e-156 554.3 372 73.9
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 4.4e-155 552.0 455 63.5
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 4.9e-154 548.5 419 63.0
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 8.3e-154 547.7 420 65.2
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 4.6e-152 542.0 446 61.0
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 3.9e-151 538.9 459 60.8
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 9.5e-150 534.3 419 63.2
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 4.9e-146 521.9 448 60.3
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.0e-143 514.2 452 61.9
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 4.7e-141 505.4 401 61.3
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 7.6e-139 498.0 334 74.0
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 9.2e-137 491.1 398 64.8
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 2.1e-133 479.9 363 67.2
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 5.2e-132 475.3 418 56.7
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 6.6e-127 458.4 366 61.2
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 2.5e-126 456.4 338 73.7
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 3.3e-126 456.1 416 55.8
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 7.3e-126 454.9 435 54.3
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.3e-125 454.1 330 66.4
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 1.1e-124 451.1 456 51.3
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 8.4e-122 441.4 424 55.2
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 1.6e-120 437.2 320 68.8
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 6.7e-111 405.2 448 51.1
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 2.6e-99 366.7 304 61.5
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 1.0e-82 311.6 254 61.0
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 1.1e-78 298.1 262 61.5
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 1.1e-73 281.6 209 66.5
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 1.8e-71 274.2 207 65.2
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 4.0e-71 273.1 434 39.4
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 1.7e-66 257.7 191 65.4
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 7.0e-60 235.7 178 64.0
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 2.2e-45 187.6 154 59.7
Lsat_1_v5_gn_7_73760 Lactuca sativa HOM05D004984 ORTHO05D006508 3.4e-38 163.7 136 59.6
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 1.2e-32 145.2 150 47.3
MBI16_g47408_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D029932 3.1e-31 140.6 210 40.5
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 4.4e-30 136.7 149 48.3
HanXRQChr14g0429701 Helianthus annuus HOM05D004984 ORTHO05D029932 1.9e-17 94.7 61 72.1
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 2.3e-10 71.2 56 58.9


User provided reference genes

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