Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g047760.1 Solanum lycopersicum HOM05D000023 ORTHO05D010901 1.2e-31 139.0 63 100.0
Glyma.10G121900 Glycine max HOM05D000023 ORTHO05D000014 1.8e-11 72.0 57 54.4
Glyma.01G121600 Glycine max HOM05D000023 ORTHO05D000014 3.1e-11 71.2 57 54.4
Glyma.06G230700 Glycine max HOM05D000023 ORTHO05D000014 3.1e-11 71.2 57 54.4
Glyma.12G152900 Glycine max HOM05D000023 ORTHO05D000014 3.1e-11 71.2 57 54.4
Glyma.13G192700 Glycine max HOM05D000023 ORTHO05D000014 3.1e-11 71.2 57 54.4
Glyma.18G099100 Glycine max HOM05D000023 ORTHO05D000014 3.1e-11 71.2 57 54.4
Glyma.19G102600 Glycine max HOM05D000023 ORTHO05D000014 3.1e-11 71.2 57 54.4
Glyma.20G072800 Glycine max HOM05D000023 ORTHO05D000014 3.1e-11 71.2 57 54.4
Glyma.20G074600 Glycine max HOM05D000023 ORTHO05D000014 3.1e-11 71.2 57 54.4
Glyma.17G215100 Glycine max HOM05D000023 ORTHO05D000014 5.3e-11 70.5 57 54.4
Glyma.14G162700 Glycine max HOM05D000023 ORTHO05D000014 6.9e-11 70.1 57 52.6
Glyma.09G104100 Glycine max HOM05D000023 ORTHO05D000014 9.1e-11 69.7 57 52.6
Glyma.07G163900 Glycine max HOM05D000023 ORTHO05D000014 1.5e-10 68.9 57 50.9
Glyma.08G294500 Glycine max HOM05D000023 ORTHO05D000014 2.6e-10 68.2 54 53.7
Glyma.02G159600 Glycine max HOM05D000023 ORTHO05D000014 4.5e-10 67.4 51 56.9
Nn1g01508 Nelumbo nucifera HOM05D000023 ORTHO05D012305 4.5e-10 67.4 59 49.2
Glyma.04G163700 Glycine max HOM05D000023 ORTHO05D000014 5.9e-10 67.0 57 52.6
Glyma.09G064900 Glycine max HOM05D000023 ORTHO05D000014 7.7e-10 66.6 57 49.1
Sed0008376 Sechium edule HOM05D000023 ORTHO05D000014 3.8e-09 64.3 54 46.3
ECA236G3681 Erigeron canadensis HOM05D011018 ORTHO05D010901 6.5e-09 63.5 55 52.7
Glyma.16G099000 Glycine max HOM05D000023 ORTHO05D000014 8.5e-09 63.2 57 49.1
Dinv18131 Davidia involucrata HOM05D000022 ORTHO05D010901 1.1e-08 62.8 56 50.0
Hma1.2p1_0490F.1_g164210 Hydrangea macrophylla HOM05D000023 ORTHO05D000014 1.1e-08 62.8 61 47.5
Glyma.09G000200 Glycine max HOM05D000023 ORTHO05D000014 2.5e-08 61.6 57 49.1
SHI16918 Sapria himalayana HOM05D003924 ORTHO05D005216 2.5e-08 61.6 50 50.0
CSS0005925 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 3.2e-08 61.2 56 42.9
Hma1.2p1_2277F.1_g318670 Hydrangea macrophylla HOM05D000023 ORTHO05D000014 3.2e-08 61.2 61 47.5
Lj2g0024203 Lotus japonicus HOM05D000023 ORTHO05D000014 3.2e-08 61.2 52 51.9
Nn2g14678 Nelumbo nucifera HOM05D000023 ORTHO05D000014 4.2e-08 60.8 56 48.2
PSO170G4702 Papaver somniferum HOM05D000023 ORTHO05D000014 4.2e-08 60.8 51 51.0
Lj1g0008556 Lotus japonicus HOM05D000023 ORTHO05D000014 7.2e-08 60.1 51 51.0
SHI03890 Sapria himalayana HOM05D000023 ORTHO05D000014 7.2e-08 60.1 58 48.3
Glyma.15G205800 Glycine max HOM05D000023 ORTHO05D000014 1.6e-07 58.9 57 43.9
CSS0049915 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 2.1e-07 58.5 56 41.1
SHI25011 Sapria himalayana HOM05D000023 ORTHO05D000014 2.1e-07 58.5 52 46.2
THA.LOC104820419 Tarenaya hassleriana HOM05D000023 ORTHO05D000014 2.1e-07 58.5 48 52.1
MSTRG.23368 Avicennia marina HOM05D000023 ORTHO05D000014 2.7e-07 58.2 52 48.1
QL02p096245 Quercus lobata HOM05D000023 ORTHO05D000014 6.1e-07 57.0 53 43.4
PGSC0003DMG400044990 Solanum tuberosum HOM05D009083 ORTHO05D010901 6.1e-07 57.0 50 48.0
Sopen07g004430 Solanum pennellii HOM05D000002 ORTHO05D000001 7.9e-07 56.6 60 43.3
Nn1g09269 Nelumbo nucifera HOM05D000023 ORTHO05D000014 1.0e-06 56.2 57 52.6
arahy.Tifrunner.gnm1.ann1.YG44LD Arachis hypogaea HOM05D000023 ORTHO05D000014 1.4e-06 55.8 54 48.1
AL7G46890 Arabidopsis lyrata HOM05D000023 ORTHO05D000014 1.8e-06 55.5 50 52.0
Lj4g0005907 Lotus japonicus HOM05D000023 ORTHO05D000014 1.8e-06 55.5 52 48.1
Lj5g0017561 Lotus japonicus HOM05D000023 ORTHO05D000014 1.8e-06 55.5 52 48.1
Sopen10g005310 Solanum pennellii HOM05D000023 ORTHO05D000014 1.8e-06 55.5 50 50.0
Sopen10g007400 Solanum pennellii HOM05D000023 ORTHO05D000014 1.8e-06 55.5 50 50.0
THA.LOC104804899 Tarenaya hassleriana HOM05D000023 ORTHO05D000014 1.8e-06 55.5 51 45.1
Lj4g0000084 Lotus japonicus HOM05D000023 ORTHO05D000014 2.3e-06 55.1 54 44.4
SHI07783 Sapria himalayana HOM05D000023 ORTHO05D000014 2.3e-06 55.1 58 44.8
arahy.Tifrunner.gnm1.ann1.WBP0IL Arachis hypogaea HOM05D000023 ORTHO05D012305 3.0e-06 54.7 54 48.1
Glyma.14G109500 Glycine max HOM05D000023 ORTHO05D013849 3.0e-06 54.7 54 44.4
Sopen01g050040 Solanum pennellii HOM05D000023 ORTHO05D000014 3.9e-06 54.3 50 50.0
Glyma.03G080400 Glycine max HOM05D000023 ORTHO05D000014 6.7e-06 53.5 38 60.5
Glyma.04G117600 Glycine max HOM05D000023 ORTHO05D000014 6.7e-06 53.5 38 60.5
SHI30372 Sapria himalayana HOM05D000023 ORTHO05D000014 6.7e-06 53.5 47 48.9


User provided reference genes

Program Settings