Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g047400.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 9.3e-62 240.0 116 100.0
Solyc00g500087.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 1.4e-41 172.9 95 86.3
Solyc00g500124.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 1.4e-41 172.9 95 86.3
Solyc00g500192.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 1.4e-41 172.9 95 86.3
PGSC0003DMG401008783 Solanum tuberosum HOM05D000533 ORTHO05D001069 2.4e-41 172.2 95 85.3
SalBow1G1175 Salvia bowleyana HOM05D000533 ORTHO05D001069 2.2e-39 165.6 93 82.8
Peaxi162Scf00030g02114 Petunia axillaris HOM05D000533 ORTHO05D001069 6.5e-39 164.1 89 85.4
PGR111G0062 Punica granatum HOM05D000533 ORTHO05D001069 1.9e-38 162.5 93 81.7
Lju5009C0T5 Lonicera japonica HOM05D000533 ORTHO05D001069 1.2e-37 159.8 93 79.6
FvH4_6g41620 Fragaria vesca HOM05D000533 ORTHO05D001069 1.6e-37 159.5 93 80.6
FAN01G2373 Fragaria x ananassa HOM05D000533 ORTHO05D001069 1.6e-37 159.5 93 80.6
RhsimPtG0005000 Rhododendron simsii HOM05D000533 ORTHO05D001069 1.6e-37 159.5 93 79.6
DCAR_032542 Daucus carota HOM05D000533 ORTHO05D001069 2.7e-37 158.7 93 80.6
Hma1.2p1_0660F.1_g197430 Hydrangea macrophylla HOM05D000533 ORTHO05D001069 2.7e-37 158.7 93 79.6
AUR62028573 Chenopodium quinoa HOM05D000533 ORTHO05D001069 3.6e-37 158.3 93 79.6
ECA074G0013 Erigeron canadensis HOM05D000533 ORTHO05D001069 3.6e-37 158.3 93 80.6
HanXRQChr01g0000271 Helianthus annuus HOM05D000533 ORTHO05D001069 3.6e-37 158.3 93 80.6
HanXRQChr02g0059741 Helianthus annuus HOM05D000533 ORTHO05D001069 3.6e-37 158.3 93 80.6
HanXRQChr09g0258481 Helianthus annuus HOM05D000533 ORTHO05D001069 3.6e-37 158.3 93 80.6
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 3.6e-37 158.3 93 80.6
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 3.6e-37 158.3 93 80.6
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 3.6e-37 158.3 93 80.6
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 3.6e-37 158.3 93 80.6
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 3.6e-37 158.3 93 80.6
Lalb_Chr07g0191821 Lupinus albus HOM05D000533 ORTHO05D001069 4.7e-37 157.9 93 80.6
EL10Ac1g02290 Beta vulgaris HOM05D000533 ORTHO05D001069 6.1e-37 157.5 93 79.6
EL10Ac6g14289 Beta vulgaris HOM05D000533 ORTHO05D001069 6.1e-37 157.5 93 79.6
Lsat_1_v5_gn_9_49240 Lactuca sativa HOM05D000533 ORTHO05D001069 6.1e-37 157.5 93 80.6
Ah.10g027260 Amaranthus hybridus HOM05D000533 ORTHO05D001069 7.9e-37 157.1 93 79.6
Ah.10g027700 Amaranthus hybridus HOM05D000533 ORTHO05D001069 7.9e-37 157.1 93 79.6
TAR625G0265 Trochodendron aralioides HOM05D000533 ORTHO05D001069 1.0e-36 156.8 93 78.5
ATR0043G018 Amborella trichopoda HOM05D000533 ORTHO05D001069 1.8e-36 156.0 93 79.6
Gohir.1Z049694 Gossypium hirsutum HOM05D000533 ORTHO05D001069 1.8e-36 156.0 93 77.4
PSO548G0122 Papaver somniferum HOM05D000533 ORTHO05D001069 1.8e-36 156.0 93 79.6
Sed0014804 Sechium edule HOM05D000533 ORTHO05D001069 1.8e-36 156.0 93 78.5
AL9U11960 Arabidopsis lyrata HOM05D000533 ORTHO05D001069 2.3e-36 155.6 93 77.4
ATCG01110 Arabidopsis thaliana HOM05D000533 ORTHO05D001069 2.3e-36 155.6 93 77.4
arahy.Tifrunner.gnm1.ann1.EMA6B0 Arachis hypogaea HOM05D000533 ORTHO05D001069 2.3e-36 155.6 93 79.6
C05p53840 Brassica napus HOM05D000533 ORTHO05D001069 2.3e-36 155.6 93 77.4
C07p33470 Brassica napus HOM05D000533 ORTHO05D001069 2.3e-36 155.6 93 77.4
C09p40300 Brassica napus HOM05D000533 ORTHO05D001069 2.3e-36 155.6 93 77.4
BolSC37t60797H Brassica oleracea HOM05D000533 ORTHO05D001069 2.3e-36 155.6 93 77.4
BolSC44t60826H Brassica oleracea HOM05D000533 ORTHO05D001069 2.3e-36 155.6 93 77.4
BolSC45t60905H Brassica oleracea HOM05D000533 ORTHO05D001069 2.3e-36 155.6 93 77.4
BraSC143t45656Z Brassica rapa HOM05D000533 ORTHO05D001069 2.3e-36 155.6 93 77.4
BraSC25t45914Z Brassica rapa HOM05D000533 ORTHO05D001069 2.3e-36 155.6 93 77.4
BraSC59t46530Z Brassica rapa HOM05D000533 ORTHO05D001069 2.3e-36 155.6 93 77.4
BraSC59t46554Z Brassica rapa HOM05D000533 ORTHO05D001069 2.3e-36 155.6 93 77.4
MELO3C027054.2 Cucumis melo HOM05D000533 ORTHO05D001069 3.0e-36 155.2 92 77.2
LjContig00318g0022363 Lotus japonicus HOM05D000533 ORTHO05D001069 3.0e-36 155.2 93 79.6
LjContig00319g0004717 Lotus japonicus HOM05D000533 ORTHO05D001069 3.0e-36 155.2 93 79.6
ATR0924G001 Amborella trichopoda HOM05D000533 ORTHO05D001069 3.9e-36 154.8 93 78.5
Psat0s6989g0240 Pisum sativum HOM05D000533 ORTHO05D001069 3.9e-36 154.8 93 77.4
Psat1g050080 Pisum sativum HOM05D000533 ORTHO05D001069 3.9e-36 154.8 93 77.4
Psat3g095040 Pisum sativum HOM05D000533 ORTHO05D001069 3.9e-36 154.8 93 77.4
Psat7g150960 Pisum sativum HOM05D000533 ORTHO05D001069 3.9e-36 154.8 93 77.4
Eucgr.K01620 Eucalyptus grandis HOM05D000533 ORTHO05D001069 5.1e-36 154.5 93 78.5
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 5.1e-36 154.5 93 78.5
QL93p0141_0008 Quercus lobata HOM05D000533 ORTHO05D001069 5.1e-36 154.5 93 78.5
unitig_91.g26523 Utricularia gibba HOM05D000533 ORTHO05D001069 6.7e-36 154.1 93 76.3
HanXRQChr09g0251511 Helianthus annuus HOM05D000533 ORTHO05D001069 8.8e-36 153.7 93 78.5
Gohir.D11G334151 Gossypium hirsutum HOM05D000533 ORTHO05D001069 1.5e-35 152.9 93 76.3
Psat7g126800 Pisum sativum HOM05D000533 ORTHO05D001069 2.0e-35 152.5 93 76.3
Nitab4.5_0007400g0040 Nicotiana tabacum HOM05D000533 ORTHO05D001069 2.6e-35 152.1 97 77.3
AUR62015545 Chenopodium quinoa HOM05D000533 ORTHO05D001069 4.4e-35 151.4 91 78.0
Medtr6g042200 Medicago truncatula HOM05D000533 ORTHO05D001069 4.4e-35 151.4 93 77.4
Lsat_1_v5_gn_5_821 Lactuca sativa HOM05D000533 ORTHO05D001069 5.7e-35 151.0 93 76.3
BolSC29t60550H Brassica oleracea HOM05D000533 ORTHO05D001069 9.7e-35 150.2 95 75.8
AUR62043262 Chenopodium quinoa HOM05D000533 ORTHO05D001069 9.7e-35 150.2 93 76.3
Lsat_1_v5_gn_4_33860 Lactuca sativa HOM05D000533 ORTHO05D001069 2.2e-34 149.1 93 77.4
Sabra10G0056200 Salix brachista HOM05D000533 ORTHO05D001069 2.2e-34 149.1 93 77.4
SabraPtG0005900 Salix brachista HOM05D000533 ORTHO05D001069 2.2e-34 149.1 93 77.4
Medtr0002s0150 Medicago truncatula HOM05D000533 ORTHO05D001069 3.7e-34 148.3 93 72.0
Psat0s1920g0160 Pisum sativum HOM05D000533 ORTHO05D001069 8.2e-34 147.1 93 75.3
arahy.Tifrunner.gnm1.ann1.G8ZYC2 Arachis hypogaea HOM05D000533 ORTHO05D001069 3.1e-33 145.2 87 75.9
SEGI_36880 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 1.2e-32 143.3 92 73.9
SEGI_41539 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 1.2e-32 143.3 92 73.9
EL10Ac9g21011 Beta vulgaris HOM05D000533 ORTHO05D001069 1.0e-31 140.2 92 72.8
C02p28810 Brassica napus HOM05D000533 ORTHO05D001069 3.8e-31 138.3 90 74.4
Sed0009234 Sechium edule HOM05D000533 ORTHO05D001069 1.5e-30 136.3 87 73.6
arahy.Tifrunner.gnm1.ann1.V68ACY Arachis hypogaea HOM05D000533 ORTHO05D001069 1.9e-30 136.0 80 77.5
CSS0030738 Camellia sinensis var. sinensis HOM05D000533 ORTHO05D001069 1.9e-30 136.0 79 79.7
Mapoly0048s0043 Marchantia polymorpha HOM05D000533 ORTHO05D001069 2.5e-30 135.6 93 69.9
vmacro22393 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 2.5e-30 135.6 80 76.2
vmacro22419 Vaccinium macrocarpon HOM05D000533 ORTHO05D001069 2.5e-30 135.6 80 76.2
arahy.Tifrunner.gnm1.ann1.URY1CV Arachis hypogaea HOM05D000533 ORTHO05D011117 3.2e-30 135.2 79 78.5
Eucgr.B00847 Eucalyptus grandis HOM05D000533 ORTHO05D001069 4.2e-30 134.8 92 70.7
SEGI_11816 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 5.5e-30 134.4 86 73.3
SEGI_26586 Sequoiadendron giganteum HOM05D000533 ORTHO05D001069 5.5e-30 134.4 86 73.3
C09p40120 Brassica napus HOM05D000890 ORTHO05D000697 1.2e-29 133.3 79 75.9
Nitab4.5_0001478g0210 Nicotiana tabacum HOM05D000445 ORTHO05D000314 8.2e-26 120.6 69 79.7
Migut.D01248 Erythranthe guttata HOM05D000533 ORTHO05D001069 1.8e-25 119.4 93 64.5
Lj2C1238G35 Lonicera japonica HOM05D000533 ORTHO05D001069 2.4e-25 119.0 68 79.4
Solyc00g500280.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 1.6e-24 116.3 70 77.1
Nitab4.5_0006502g0030 Nicotiana tabacum HOM05D000533 ORTHO05D001069 2.0e-24 115.9 68 79.4
SMO086G0065 Selaginella moellendorffii HOM05D000533 ORTHO05D001069 3.5e-24 115.2 91 64.8
CAN.G30.7 Capsicum annuum HOM05D000533 ORTHO05D001069 5.9e-24 114.4 73 74.0
Nn1g08631 Nelumbo nucifera HOM05D000533 ORTHO05D001069 5.0e-23 111.3 64 79.7
Thecc.01G108100 Theobroma cacao HOM05D000533 ORTHO05D001069 5.0e-23 111.3 68 75.0
Sc02g0003430 Simmondsia chinensis HOM05D000533 ORTHO05D001069 6.5e-23 110.9 72 72.2
HanXRQChr00c0504g0575321 Helianthus annuus HOM05D000533 ORTHO05D001069 8.5e-23 110.5 66 77.3
HanXRQChr00c0336g0573701 Helianthus annuus HOM05D000533 ORTHO05D001069 1.5e-22 109.8 65 76.9
BolSC29t60510H Brassica oleracea HOM05D000533 ORTHO05D001069 1.9e-22 109.4 66 74.2
CAN.G1045.9 Capsicum annuum HOM05D000533 ORTHO05D001069 3.2e-22 108.6 65 76.9
FvH4_c3g00020 Fragaria vesca HOM05D000533 ORTHO05D001069 4.2e-22 108.2 66 74.2
Solyc08g022150.2 Solanum lycopersicum HOM05D000533 ORTHO05D001069 9.4e-22 107.1 66 77.3
Nitab4.5_0000843g0020 Nicotiana tabacum HOM05D000533 ORTHO05D001069 1.2e-21 106.7 95 61.1
BolC2t10601H Brassica oleracea HOM05D000533 ORTHO05D001069 1.6e-21 106.3 65 72.3
BolSC35t60708H Brassica oleracea HOM05D000533 ORTHO05D001069 1.6e-21 106.3 65 72.3
Gorai.011G083800 Gossypium raimondii HOM05D000533 ORTHO05D001069 2.7e-21 105.5 74 67.6
Hma1.2p1_0660F.1_g197440 Hydrangea macrophylla HOM05D000533 ORTHO05D002807 3.6e-21 105.1 61 77.0
Hma1.2p1_2753F.1_g327925 Hydrangea macrophylla HOM05D000533 ORTHO05D002807 3.6e-21 105.1 61 77.0
Psat0s1160g0320 Pisum sativum HOM05D000533 ORTHO05D001069 1.4e-20 103.2 125 47.2
Lsat_1_v5_gn_5_65981 Lactuca sativa HOM05D000533 ORTHO05D001069 6.8e-20 100.9 74 71.6
arahy.Tifrunner.gnm1.ann1.1262SD Arachis hypogaea HOM05D000533 ORTHO05D002807 8.8e-20 100.5 61 73.8
Gohir.A13G086335 Gossypium hirsutum HOM05D000533 ORTHO05D001069 1.3e-18 96.7 59 72.9
GSVIVG01012613001 Vitis vinifera HOM05D000533 ORTHO05D001069 6.3e-18 94.4 64 68.8
Sed0015694 Sechium edule HOM05D000533 ORTHO05D001069 1.8e-17 92.8 70 65.7
Nitab4.5_0000660g0050 Nicotiana tabacum HOM05D000533 ORTHO05D001069 3.1e-17 92.0 55 76.4
CAN.G127.9 Capsicum annuum HOM05D000533 ORTHO05D001069 5.3e-17 91.3 58 74.1
Haze_22013 Corylus avellana HOM05D000001 ORTHO05D000003 7.0e-17 90.9 72 61.1
Gohir.D08G207450 Gossypium hirsutum HOM05D000533 ORTHO05D001069 7.0e-17 90.9 93 52.7
Lsat_1_v5_gn_9_115440 Lactuca sativa HOM05D000533 ORTHO05D001069 1.2e-16 90.1 52 78.8
Peaxi162Scf01018g00211 Petunia axillaris HOM05D000533 ORTHO05D001069 5.9e-16 87.8 59 71.2
Psat5g037800 Pisum sativum HOM05D000533 ORTHO05D001069 5.9e-16 87.8 53 75.5
MELO3C031837.2 Cucumis melo HOM05D000533 ORTHO05D001069 3.8e-15 85.1 64 59.4
GSVIVG01029925001 Vitis vinifera HOM05D000533 ORTHO05D001069 6.5e-15 84.3 57 70.2
ClCG10G006000 Citrullus lanatus HOM05D000533 ORTHO05D001069 8.5e-15 84.0 53 69.8
COL.COLO4_01565 Corchorus olitorius HOM05D000533 ORTHO05D001069 1.1e-14 83.6 49 77.6
Nitab4.5_0006409g0060 Nicotiana tabacum HOM05D000533 ORTHO05D001069 7.2e-14 80.9 46 78.3
Gohir.A04G053078 Gossypium hirsutum HOM05D000533 ORTHO05D001069 2.1e-13 79.3 93 47.3
Nitab4.5_0000003g0640 Nicotiana tabacum HOM05D000533 ORTHO05D001069 1.4e-12 76.6 50 70.0
Gorai.006G101200 Gossypium raimondii HOM05D000533 ORTHO05D001069 4.0e-12 75.1 54 63.0
Peaxi162Scf00654g00052 Petunia axillaris HOM05D000533 ORTHO05D001069 4.0e-12 75.1 80 51.2
Psat0s1160g0400 Pisum sativum HOM05D000533 ORTHO05D002807 6.8e-12 74.3 38 86.8
Sed0022513 Sechium edule HOM05D000533 ORTHO05D001069 2.0e-11 72.8 40 82.5
Atru.chr5.1326 Acer truncatum HOM05D000533 ORTHO05D001069 3.7e-10 68.6 35 88.6
BolSC49t61147H Brassica oleracea HOM05D000533 ORTHO05D001069 4.8e-10 68.2 37 78.4
A08p24980 Brassica napus HOM05D000533 ORTHO05D001069 6.3e-10 67.8 40 72.5
BraA08t34453Z Brassica rapa HOM05D000533 ORTHO05D001069 6.3e-10 67.8 40 72.5
Gorai.013G076700 Gossypium raimondii HOM05D000533 ORTHO05D001069 8.3e-10 67.4 57 56.1
Solyc11g021237.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 8.3e-10 67.4 40 77.5
Gorai.003G071300 Gossypium raimondii HOM05D000533 ORTHO05D001069 3.1e-09 65.5 39 71.8
CAN.G615.5 Capsicum annuum HOM05D000533 ORTHO05D001069 1.2e-08 63.5 37 75.7
Gohir.D09G085250 Gossypium hirsutum HOM05D000533 ORTHO05D001069 2.0e-08 62.8 48 58.3
arahy.Tifrunner.gnm1.ann1.JUM97N Arachis hypogaea HOM05D000533 ORTHO05D001069 4.5e-08 61.6 43 69.8
Hund28343 Selenicereus undatus HOM05D000533 ORTHO05D001069 1.3e-07 60.1 42 71.4
Hund29094 Selenicereus undatus HOM05D000533 ORTHO05D001069 1.3e-07 60.1 42 71.4
Hund30925 Selenicereus undatus HOM05D000533 ORTHO05D001069 1.3e-07 60.1 42 71.4
Solyc07g032430.1 Solanum lycopersicum HOM05D000533 ORTHO05D001069 3.8e-07 58.5 33 81.8
arahy.Tifrunner.gnm1.ann1.840LER Arachis hypogaea HOM05D000533 ORTHO05D002807 5.0e-07 58.2 30 80.0
Nitab4.5_0002739g0180 Nicotiana tabacum HOM05D001560 ORTHO05D003613 2.5e-06 55.8 35 74.3


User provided reference genes

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