Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.5e-52 209.1 101 100.0
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 3.2e-42 174.9 94 90.4
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.8e-37 159.1 94 80.9
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 4.1e-37 157.9 94 80.9
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 5.0e-35 151.0 94 74.5
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 2.5e-34 148.7 94 73.4
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 2.5e-34 148.7 94 73.4
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 3.2e-34 148.3 96 68.8
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 7.2e-34 147.1 94 71.3
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 7.2e-34 147.1 94 69.1
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.6e-33 146.0 94 70.2
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 2.1e-33 145.6 94 69.1
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 2.1e-33 145.6 94 71.3
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 4.6e-33 144.4 94 68.1
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 6.1e-33 144.1 94 68.1
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 7.9e-33 143.7 94 70.2
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 7.9e-33 143.7 94 68.1
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 7.9e-33 143.7 94 67.0
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.0e-32 143.3 94 69.1
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 1.0e-32 143.3 94 70.2
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.0e-32 143.3 94 70.2
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.3e-32 142.9 94 69.1
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.8e-32 142.5 94 69.1
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.8e-32 142.5 94 70.2
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 2.3e-32 142.1 94 68.1
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 3.0e-32 141.7 94 70.2
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 3.0e-32 141.7 93 71.0
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 3.0e-32 141.7 93 71.0
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 3.0e-32 141.7 94 69.1
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 3.9e-32 141.4 94 67.0
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 3.9e-32 141.4 94 67.0
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 3.9e-32 141.4 93 67.7
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 5.1e-32 141.0 94 69.1
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 5.1e-32 141.0 94 67.0
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 5.1e-32 141.0 94 73.4
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 5.1e-32 141.0 94 71.3
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 6.7e-32 140.6 94 70.2
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 8.7e-32 140.2 94 67.0
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 8.7e-32 140.2 94 69.1
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 8.7e-32 140.2 94 70.2
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 1.1e-31 139.8 94 66.0
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 1.1e-31 139.8 94 68.1
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 1.5e-31 139.4 94 68.1
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.5e-31 139.4 94 69.1
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 1.5e-31 139.4 94 69.1
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 1.5e-31 139.4 94 69.1
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.9e-31 139.0 94 69.1
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 1.9e-31 139.0 94 69.1
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 2.5e-31 138.7 94 66.0
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 2.5e-31 138.7 94 67.0
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 2.5e-31 138.7 94 68.1
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 4.3e-31 137.9 94 67.0
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 4.3e-31 137.9 94 68.1
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 4.3e-31 137.9 94 64.9
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 5.7e-31 137.5 94 67.0
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 5.7e-31 137.5 94 66.0
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 7.4e-31 137.1 94 67.0
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 9.7e-31 136.7 94 64.9
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 9.7e-31 136.7 94 66.0
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 1.3e-30 136.3 94 67.0
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 1.3e-30 136.3 95 67.4
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.3e-30 136.3 94 64.9
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.3e-30 136.3 94 64.9
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 2.2e-30 135.6 94 66.0
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 2.2e-30 135.6 94 66.0
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 2.2e-30 135.6 94 64.9
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 2.8e-30 135.2 94 67.0
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 4.8e-30 134.4 94 66.0
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 8.2e-30 133.7 94 64.9
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 8.2e-30 133.7 94 64.9
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 8.2e-30 133.7 94 66.0
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 1.1e-29 133.3 94 64.9
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 1.1e-29 133.3 96 65.6
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.1e-29 133.3 94 64.9
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 1.4e-29 132.9 94 61.7
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 1.8e-29 132.5 94 64.9
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 2.4e-29 132.1 94 63.8
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 2.4e-29 132.1 94 66.0
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 3.1e-29 131.7 94 63.8
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 4.1e-29 131.3 89 67.4
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 4.1e-29 131.3 91 64.8
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 5.3e-29 131.0 94 63.8
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 6.9e-29 130.6 98 65.3
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 6.9e-29 130.6 94 64.9
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 6.9e-29 130.6 94 62.8
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 9.0e-29 130.2 94 62.8
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 9.0e-29 130.2 94 60.6
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 1.2e-28 129.8 90 65.6
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 1.5e-28 129.4 100 60.0
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 2.0e-28 129.0 94 61.7
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 2.6e-28 128.6 100 60.0
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 2.6e-28 128.6 94 61.7
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 5.9e-28 127.5 94 63.8
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 1.3e-27 126.3 94 61.7
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 1.7e-27 125.9 95 64.2
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 1.7e-27 125.9 92 60.9
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 1.7e-27 125.9 91 62.6
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 2.2e-27 125.6 91 64.8
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 3.8e-27 124.8 91 63.7
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 5.0e-27 124.4 95 63.2
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 8.5e-27 123.6 91 63.7
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 8.5e-27 123.6 91 62.6
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 2.5e-26 122.1 93 60.2
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 5.5e-26 120.9 91 61.5
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 7.2e-26 120.6 91 62.6
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 7.2e-26 120.6 91 61.5
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 7.2e-26 120.6 91 60.4
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 9.4e-26 120.2 92 56.5
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 9.4e-26 120.2 91 60.4
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 1.2e-25 119.8 81 67.9
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 2.1e-25 119.0 94 57.4
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 2.1e-25 119.0 95 58.9
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 2.1e-25 119.0 97 59.8
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 2.7e-25 118.6 90 61.1
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 2.7e-25 118.6 91 58.2
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 3.6e-25 118.2 93 59.1
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 4.6e-25 117.9 91 59.3
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 4.6e-25 117.9 91 57.1
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 6.1e-25 117.5 92 55.4
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 6.1e-25 117.5 92 56.5
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 1.0e-24 116.7 93 60.2
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 1.0e-24 116.7 91 54.9
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 1.8e-24 115.9 94 62.8
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 1.8e-24 115.9 91 58.2
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 2.3e-24 115.5 91 60.4
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 3.0e-24 115.2 92 57.6
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 3.9e-24 114.8 92 56.5
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 6.7e-24 114.0 91 57.1
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 8.8e-24 113.6 92 57.6
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 2.5e-23 112.1 92 53.3
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 4.3e-23 111.3 92 54.3
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 4.3e-23 111.3 94 55.3
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 5.7e-23 110.9 91 54.9
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 5.7e-23 110.9 91 57.1
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 1.3e-22 109.8 90 55.6
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 1.3e-22 109.8 90 55.6
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 1.7e-22 109.4 92 52.2
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 4.8e-22 107.8 94 51.1
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 8.2e-22 107.1 94 56.4
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 1.1e-21 106.7 95 52.6
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 1.4e-21 106.3 92 55.4
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 5.3e-21 104.4 92 55.4
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 1.2e-20 103.2 91 54.9
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 7.7e-20 100.5 93 52.7
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 1.7e-19 99.4 90 53.3
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 5.0e-19 97.8 70 65.7
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.1e-18 96.7 86 55.8
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 1.1e-18 96.7 99 51.5
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.5e-18 95.5 93 50.5
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.5e-18 95.5 93 50.5
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 3.2e-18 95.1 93 50.5
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.2e-18 95.1 93 50.5
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 2.7e-17 92.0 50 88.0
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 6.1e-17 90.9 95 44.2
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 1.8e-16 89.4 92 50.0
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 5.1e-16 87.8 74 56.8
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 5.7e-15 84.3 60 61.7
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 7.4e-15 84.0 89 48.3
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 7.4e-15 84.0 60 63.3
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.3e-14 83.2 92 46.7
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 8.2e-14 80.5 82 48.8
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 1.4e-13 79.7 60 60.0
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 5.3e-13 77.8 50 66.0
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 5.3e-13 77.8 50 68.0
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 1.7e-11 72.8 57 56.1
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 2.9e-11 72.0 50 66.0
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 6.5e-11 70.9 50 64.0
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 6.5e-11 70.9 50 62.0
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 6.1e-09 64.3 82 40.2
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.3e-08 62.4 36 80.6
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 1.5e-07 59.7 36 75.0
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 6.3e-06 54.3 76 42.1


User provided reference genes

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