Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g047120.2 Solanum lycopersicum HOM05D004862 ORTHO05D005841 3.7e-290 1000.7 482 100.0
Sopen10g017280 Solanum pennellii HOM05D004862 ORTHO05D005841 4.6e-288 993.8 482 99.0
PGSC0003DMG400017691 Solanum tuberosum HOM05D004862 ORTHO05D005841 8.7e-279 963.0 518 90.3
CAN.G1.65 Capsicum annuum HOM05D004862 ORTHO05D005841 2.8e-261 904.8 482 89.2
Nitab4.5_0005079g0020 Nicotiana tabacum HOM05D004862 ORTHO05D005841 4.8e-253 877.5 491 85.9
Nitab4.5_0000078g0200 Nicotiana tabacum HOM05D004862 ORTHO05D005841 5.3e-252 874.0 491 86.4
CSS0014529 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 9.7e-246 853.2 495 80.4
CSS0027197 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 2.8e-245 851.7 495 80.2
Dinv24234 Davidia involucrata HOM05D004862 ORTHO05D005841 2.2e-242 842.0 489 81.2
Cc02_g18820 Coffea canephora HOM05D004862 ORTHO05D005841 3.9e-239 831.2 485 81.0
Rhsim11G0133700 Rhododendron simsii HOM05D004862 ORTHO05D005841 1.1e-238 829.7 491 79.6
Duzib132G0210 Durio zibethinus HOM05D004862 ORTHO05D005841 4.3e-238 827.8 487 80.7
Thecc.02G156500 Theobroma cacao HOM05D004862 ORTHO05D005841 6.3e-237 823.9 487 80.5
MD12G1223100 Malus domestica HOM05D004862 ORTHO05D005841 8.2e-237 823.5 482 79.5
Oeu000228.1 Olea europaea HOM05D004862 ORTHO05D005841 8.2e-237 823.5 482 80.3
FAN05G4126 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.1e-236 823.2 482 80.1
RcHm_v2.0_Chr3g0454151 Rosa chinensis HOM05D004862 ORTHO05D005841 5.3e-236 820.8 483 79.9
DCAR_021834 Daucus carota HOM05D004862 ORTHO05D005841 2.0e-235 818.9 483 79.1
CiPaw.13G145700 Carya illinoinensis HOM05D004862 ORTHO05D005841 2.6e-235 818.5 486 79.2
COL.COLO4_33088 Corchorus olitorius HOM05D004862 ORTHO05D005841 3.4e-235 818.1 487 80.1
FvH4_6g05370 Fragaria vesca HOM05D004862 ORTHO05D005841 1.0e-234 816.6 484 79.3
FAN14G5837 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.3e-234 816.2 484 79.3
Gohir.A01G012300 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.3e-234 816.2 487 79.1
FAN02G3155 Fragaria x ananassa HOM05D004862 ORTHO05D005841 5.0e-234 814.3 482 79.3
FAN14G4788 Fragaria x ananassa HOM05D004862 ORTHO05D005841 5.0e-234 814.3 484 79.1
Ciclev10015108m.g Citrus clementina HOM05D004862 ORTHO05D005841 8.5e-234 813.5 482 80.1
Glyma.08G075600 Glycine max HOM05D004862 ORTHO05D005841 1.9e-233 812.4 484 79.8
Phvul.002G205600 Phaseolus vulgaris HOM05D004862 ORTHO05D005841 1.9e-233 812.4 484 79.3
FAN09G3019 Fragaria x ananassa HOM05D004862 ORTHO05D005841 7.2e-233 810.4 482 79.0
Manes.14G165200 Manihot esculenta HOM05D004862 ORTHO05D005841 9.4e-233 810.1 482 79.5
CANSAT54G0577 Cannabis sativa HOM05D004862 ORTHO05D005841 1.2e-232 809.7 486 78.8
Gorai.002G015300 Gossypium raimondii HOM05D004862 ORTHO05D005841 1.2e-232 809.7 487 78.6
Prupe.6G329700 Prunus persica HOM05D004862 ORTHO05D005841 1.6e-232 809.3 483 78.9
Gohir.D13G060400 Gossypium hirsutum HOM05D004862 ORTHO05D005841 7.9e-232 807.0 485 79.8
Glyma.05G121000 Glycine max HOM05D004862 ORTHO05D005841 1.0e-231 806.6 484 78.5
SGA_v2.0_scaffold332G48937 Striga asiatica HOM05D004862 ORTHO05D005841 1.8e-231 805.8 482 79.3
Lsat_1_v5_gn_9_117961 Lactuca sativa HOM05D004862 ORTHO05D005841 2.3e-231 805.4 483 78.5
Nn1g06191 Nelumbo nucifera HOM05D004862 ORTHO05D005841 2.3e-231 805.4 483 77.4
arahy.Tifrunner.gnm1.ann1.WE1E8S Arachis hypogaea HOM05D004862 ORTHO05D005841 5.7e-230 800.8 484 77.5
Lj5A244T54 Lonicera japonica HOM05D004862 ORTHO05D005841 5.7e-230 800.8 482 78.0
Gorai.013G068500 Gossypium raimondii HOM05D004862 ORTHO05D005841 9.7e-230 800.0 498 77.7
arahy.Tifrunner.gnm1.ann1.34Q84K Arachis hypogaea HOM05D004862 ORTHO05D005841 1.3e-229 799.7 484 77.5
Cfa010154 Carpinus fangiana HOM05D004862 ORTHO05D005841 2.2e-229 798.9 483 78.1
Aqoxy6G00342 Aquilegia oxysepala HOM05D004862 ORTHO05D005841 3.7e-229 798.1 482 77.6
HanXRQChr03g0065771 Helianthus annuus HOM05D004862 ORTHO05D005841 6.3e-229 797.3 482 77.0
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 3.1e-228 795.0 483 77.4
Potri.001G207000 Populus trichocarpa HOM05D004862 ORTHO05D005841 9.1e-228 793.5 482 77.2
Medtr4g094315 Medicago truncatula HOM05D004862 ORTHO05D005841 1.2e-227 793.1 484 77.7
PGR042G3925 Punica granatum HOM05D004862 ORTHO05D005841 1.5e-227 792.7 485 77.1
Sed0027136 Sechium edule HOM05D004862 ORTHO05D005841 2.0e-227 792.3 483 78.1
VMungo0251G1232 Vigna mungo HOM05D004862 ORTHO05D005841 5.9e-227 790.8 509 75.0
Ca_29818_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 7.7e-227 790.4 485 77.7
Gohir.D01G013500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.0e-226 790.0 472 78.8
Psat7g096360 Pisum sativum HOM05D004862 ORTHO05D005841 1.0e-226 790.0 484 76.9
vmacro01803 Vaccinium macrocarpon HOM05D004862 ORTHO05D005841 2.2e-226 788.9 572 68.0
Hund06875 Selenicereus undatus HOM05D004862 ORTHO05D005841 8.5e-226 786.9 491 76.0
TWI23G0249 Tripterygium wilfordii HOM05D004862 ORTHO05D005841 8.5e-226 786.9 482 76.8
Lj4g0019477 Lotus japonicus HOM05D004862 ORTHO05D005841 1.4e-225 786.2 485 76.1
Lj9A317G73 Lonicera japonica HOM05D004862 ORTHO05D005841 1.2e-224 783.1 491 76.6
MSTRG.16558 Avicennia marina HOM05D004862 ORTHO05D005841 4.7e-224 781.2 484 76.9
ECA240G2004 Erigeron canadensis HOM05D004862 ORTHO05D005841 4.7e-224 781.2 474 76.6
MELO3C012691.2 Cucumis melo HOM05D004862 ORTHO05D005841 3.0e-223 778.5 483 76.8
Peaxi162Scf00003g03739 Petunia axillaris HOM05D004862 ORTHO05D005841 3.0e-223 778.5 417 89.9
THA.LOC104818254 Tarenaya hassleriana HOM05D004862 ORTHO05D005841 1.5e-222 776.2 482 75.7
ClCG09G014610 Citrullus lanatus HOM05D004862 ORTHO05D005841 2.0e-222 775.8 482 76.3
Gohir.A13G061500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 2.6e-222 775.4 459 80.2
PSO675G5038 Papaver somniferum HOM05D004862 ORTHO05D005841 2.6e-222 775.4 483 75.2
Ah.04g163010 Amaranthus hybridus HOM05D004862 ORTHO05D005841 4.4e-222 774.6 486 76.3
AUR62003397 Chenopodium quinoa HOM05D004862 ORTHO05D005841 5.7e-222 774.2 487 74.7
Thhalv10004120m.g Eutrema salsugineum HOM05D004862 ORTHO05D005841 1.4e-220 769.6 482 74.1
PSO541G6054 Papaver somniferum HOM05D004862 ORTHO05D005841 1.8e-220 769.2 488 74.2
Lalb_Chr07g0189371 Lupinus albus HOM05D004862 ORTHO05D005841 2.4e-220 768.8 489 75.5
CARHR147430 Cardamine hirsuta HOM05D004862 ORTHO05D005841 7.0e-220 767.3 483 74.5
QL01p020593 Quercus lobata HOM05D004862 ORTHO05D005841 9.1e-220 766.9 578 65.4
CDE02G2941 Ceratophyllum demersum HOM05D004862 ORTHO05D005841 1.2e-219 766.5 482 74.5
Migut.B00646 Erythranthe guttata HOM05D004862 ORTHO05D005841 3.5e-219 765.0 483 75.6
BraA06t27120Z Brassica rapa HOM05D004862 ORTHO05D005841 4.5e-219 764.6 482 73.7
EL10Ac4g08938 Beta vulgaris HOM05D004862 ORTHO05D005841 5.9e-219 764.2 486 74.7
BolC2t11381H Brassica oleracea HOM05D004862 ORTHO05D005841 1.7e-218 762.7 482 73.7
AL5G15180 Arabidopsis lyrata HOM05D004862 ORTHO05D005841 2.2e-218 762.3 482 73.9
A06p42030 Brassica napus HOM05D004862 ORTHO05D005841 2.9e-218 761.9 482 73.4
C07p35450 Brassica napus HOM05D004862 ORTHO05D005841 5.0e-218 761.1 482 73.2
BolC7t44069H Brassica oleracea HOM05D004862 ORTHO05D005841 5.0e-218 761.1 482 73.2
AT3G26410 Arabidopsis thaliana HOM05D004862 ORTHO05D005841 6.5e-218 760.8 482 73.2
Aa31LG2G6120 Aethionema arabicum HOM05D004862 ORTHO05D005841 1.2e-216 756.5 482 73.2
Carub.0005s0438 Capsella rubella HOM05D004862 ORTHO05D005841 2.7e-216 755.4 482 73.4
CsaV3_7G022230 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.7e-216 755.4 458 77.7
MBI06_g20970_MAGBIO Magnolia biondii HOM05D004862 ORTHO05D005841 6.1e-216 754.2 487 72.9
Sp2g15560 Schrenkiella parvula HOM05D004862 ORTHO05D005841 8.0e-216 753.8 482 72.4
BcaB07g30229 Brassica carinata HOM05D004862 ORTHO05D005841 2.3e-215 752.3 482 72.8
Sc09g0004450 Simmondsia chinensis HOM05D004862 ORTHO05D005841 4.0e-215 751.5 482 73.0
BraA02t08465Z Brassica rapa HOM05D004862 ORTHO05D005841 5.2e-215 751.1 482 72.4
BcaC03g17366 Brassica carinata HOM05D004862 ORTHO05D005841 2.0e-214 749.2 506 70.2
Sabra01G0160300 Salix brachista HOM05D004862 ORTHO05D005841 6.3e-213 744.2 566 64.7
ATR1136G066 Amborella trichopoda HOM05D004862 ORTHO05D005841 8.2e-213 743.8 488 71.5
Os02g0556400 Oryza sativa ssp. japonica HOM05D004862 ORTHO05D005841 1.4e-207 726.5 486 70.0
SalBow5G3806 Salvia bowleyana HOM05D004862 ORTHO05D005841 1.8e-207 726.1 571 63.6
GSVIVG01029751001 Vitis vinifera HOM05D004862 ORTHO05D005841 2.3e-207 725.7 482 73.4
Eucgr.G00660 Eucalyptus grandis HOM05D004862 ORTHO05D005841 1.3e-205 719.9 411 81.8
BcaNung06886 Brassica carinata HOM05D004862 ORTHO05D005841 1.1e-204 716.8 491 69.7
SalBow5G4932 Salvia bowleyana HOM05D004862 ORTHO05D005841 1.4e-204 716.5 596 60.9
AUR62004780 Chenopodium quinoa HOM05D004862 ORTHO05D005841 3.5e-203 711.8 545 65.1
SHI16537 Sapria himalayana HOM05D004862 ORTHO05D005841 1.3e-202 709.9 482 70.5
C02p53070 Brassica napus HOM05D004862 ORTHO05D005841 1.7e-202 709.5 506 68.0
Ciclev10008412m.g Citrus clementina HOM05D004862 ORTHO05D005841 7.8e-195 684.1 450 74.0
Mapoly0006s0193 Marchantia polymorpha HOM05D004862 ORTHO05D005841 1.6e-184 649.8 488 64.3
A02p34570 Brassica napus HOM05D004862 ORTHO05D005841 4.7e-184 648.3 411 73.5
SEGI_34202 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 1.7e-181 639.8 431 70.8
Pp3c13_18080 Physcomitrium patens HOM05D004862 ORTHO05D005841 1.1e-180 637.1 494 62.1
SMO115G0021 Selaginella moellendorffii HOM05D004862 ORTHO05D005841 1.7e-178 629.8 487 62.6
TAR116G0002 Trochodendron aralioides HOM05D004862 ORTHO05D005841 3.6e-176 622.1 374 78.3
Atru.chr6.1121 Acer truncatum HOM05D004862 ORTHO05D005841 9.2e-172 607.4 360 79.2
HPP92_004639 Vanilla planifolia HOM05D004862 ORTHO05D005841 5.6e-169 598.2 373 72.9
HPP92_004630 Vanilla planifolia HOM05D004862 ORTHO05D005841 3.1e-167 592.4 373 72.4
FAN05G4337 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.9e-161 573.2 327 82.6
TPR.G31479 Trifolium pratense HOM05D004862 ORTHO05D005841 1.6e-160 570.1 342 77.2
TAR628G0283 Trochodendron aralioides HOM05D004862 ORTHO05D005841 6.2e-160 568.2 327 82.0
Cpa.g.sc845.1 Carica papaya HOM05D004862 ORTHO05D005841 5.8e-158 561.6 327 80.4
CBR_g37214 Chara braunii HOM05D004862 ORTHO05D005841 5.8e-158 561.6 530 53.0
C02p53050 Brassica napus HOM05D004862 ORTHO05D005841 3.8e-149 532.3 324 77.2
BolC2t11366H Brassica oleracea HOM05D004862 ORTHO05D005841 3.8e-149 532.3 333 76.0
BcaC03g17340 Brassica carinata HOM05D004862 ORTHO05D005841 7.9e-147 524.6 360 70.3
Zm00001eb243830 Zea mays HOM05D004862 ORTHO05D005841 5.1e-146 521.9 328 75.9
SEGI_00112 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 1.6e-139 500.4 351 70.9
CsaV3_7G014980 Cucumis sativus L. HOM05D004862 ORTHO05D005841 6.2e-136 488.4 298 76.5
C02p52870 Brassica napus HOM05D004862 ORTHO05D005841 2.5e-132 476.5 327 70.9
MCO05G740 Micromonas commoda HOM05D004862 ORTHO05D005841 2.0e-105 387.1 498 42.0
Cre08.g359100 Chlamydomonas reinhardtii HOM05D004862 ORTHO05D005841 4.8e-104 382.5 386 49.5
CsaV3_UNG189490 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.3e-101 374.4 222 77.9
Ca_29817_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.3e-93 347.8 211 79.1
PRCOL_00003583 Prasinoderma coloniale HOM05D004862 ORTHO05D005841 2.5e-92 343.6 437 44.2
unitig_26.g9584 Utricularia gibba HOM05D004862 ORTHO05D005841 6.1e-91 339.0 230 68.7
Ca_25384_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 2.4e-79 300.4 187 78.1
CsaV3_7G015000 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.0e-74 283.1 159 82.4
CsaV3_UNG187480 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.0e-74 283.1 159 82.4
CsaV3_7G014960 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.9e-71 274.2 159 81.1
unitig_26.g9585 Utricularia gibba HOM05D004862 ORTHO05D005841 1.6e-70 271.2 145 83.4
Cfa021801 Carpinus fangiana HOM05D004862 ORTHO05D005841 1.3e-56 224.9 426 33.6
Ca_31280_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.1e-42 178.7 106 79.2
CsaV3_UNG197500 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.0e-42 176.8 106 79.2
AagrBONN_evm.TU.Sc2ySwM_344.4621 Anthoceros agrestis HOM05D004862 ORTHO05D005841 9.0e-42 175.6 141 58.2
CsaV3_7G014970 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.5e-41 174.9 94 86.2
CsaV3_7G015010 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.4e-41 173.7 93 87.1
BolC2t11379H Brassica oleracea HOM05D004862 ORTHO05D005841 7.1e-39 166.0 119 68.9
Potri.003G022650 Populus trichocarpa HOM05D004862 ORTHO05D005841 2.9e-32 144.1 91 71.4
TAR628G0087 Trochodendron aralioides HOM05D004862 ORTHO05D005841 2.7e-22 110.9 67 73.1
Actinidia00239 Actinidia chinensis HOM05D004862 ORTHO05D005841 3.9e-21 107.1 87 58.6
Potri.003G022701 Populus trichocarpa HOM05D004862 ORTHO05D005841 2.8e-19 100.9 76 65.8
CsaV3_7G014950 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.4e-18 98.6 65 66.2
Cfa010153 Carpinus fangiana HOM05D004862 ORTHO05D005841 6.9e-18 96.3 70 65.7
unitig_26.g9586 Utricularia gibba HOM05D004862 ORTHO05D005841 5.8e-17 93.2 69 68.1
Dinv28090 Davidia involucrata HOM05D000259 ORTHO05D000155 4.3e-12 77.0 122 37.7
MCO05G371 Micromonas commoda HOM05D004862 ORTHO05D267887 5.0e-08 63.5 130 34.6


User provided reference genes

Program Settings