Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g047040.3 Solanum lycopersicum HOM05D007421 ORTHO05D009203 1.8e-182 642.5 340 100.0
Sopen10g016990 Solanum pennellii HOM05D007421 ORTHO05D009203 2.2e-180 635.6 340 99.1
PGSC0003DMG400024171 Solanum tuberosum HOM05D007421 ORTHO05D009203 1.7e-151 539.7 338 87.9
Nitab4.5_0011639g0020 Nicotiana tabacum HOM05D007421 ORTHO05D009203 1.1e-118 430.6 343 72.0
Nitab4.5_0000078g0170 Nicotiana tabacum HOM05D007421 ORTHO05D009203 4.3e-115 418.7 342 73.1
CAN.G1034.36 Capsicum annuum HOM05D007421 ORTHO05D009203 4.2e-110 402.1 355 67.6
Nitab4.5_0004176g0040 Nicotiana tabacum HOM05D007421 ORTHO05D009203 1.5e-107 393.7 342 71.1
Peaxi162Scf00003g03742 Petunia axillaris HOM05D007421 ORTHO05D009203 9.0e-73 278.1 344 56.1
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 7.7e-48 195.3 363 40.5
Cc02_g21850 Coffea canephora HOM05D007421 ORTHO05D009203 3.8e-47 193.0 353 39.9
Dinv24220 Davidia involucrata HOM05D007421 ORTHO05D009203 2.1e-45 187.2 364 39.8
CSS0048527 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 1.5e-43 181.0 360 40.0
CSS0030012 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 1.7e-42 177.6 360 39.4
Rhsim11G0134600 Rhododendron simsii HOM05D007421 ORTHO05D009203 3.2e-38 163.3 384 34.4
CiPaw.06G151100 Carya illinoinensis HOM05D007421 ORTHO05D009203 8.0e-37 158.7 250 41.6
vmacro01809 Vaccinium macrocarpon HOM05D007421 ORTHO05D009203 5.2e-36 156.0 360 36.4
Oeu000232.1 Olea europaea HOM05D007421 ORTHO05D009203 1.5e-35 154.5 353 36.5
Cfa005578 Carpinus fangiana HOM05D007421 ORTHO05D009203 4.4e-35 152.9 301 37.2
Nn5g28883 Nelumbo nucifera HOM05D007421 ORTHO05D009203 3.1e-33 146.7 311 36.3
Ca_18335_v3 Cicer arietinum L. HOM05D007421 ORTHO05D009203 1.2e-32 144.8 361 33.5
ClCG09G021300 Citrullus lanatus HOM05D007421 ORTHO05D009203 1.3e-31 141.4 245 37.6
DCAR_029217 Daucus carota HOM05D007421 ORTHO05D009203 1.3e-31 141.4 302 40.1
Actinidia00249 Actinidia chinensis HOM05D007421 ORTHO05D009203 2.9e-31 140.2 292 38.0
Manes.11G148500 Manihot esculenta HOM05D007421 ORTHO05D009203 3.8e-31 139.8 282 37.6
TAR628G0675 Trochodendron aralioides HOM05D007421 ORTHO05D009203 1.9e-30 137.5 354 31.9
CsaV3_7G012710 Cucumis sativus L. HOM05D007421 ORTHO05D009203 1.6e-29 134.4 280 33.6
Sed0000945 Sechium edule HOM05D007421 ORTHO05D009203 4.0e-28 129.8 366 32.8
Sc08g0004770 Simmondsia chinensis HOM05D007421 ORTHO05D009203 1.5e-27 127.9 354 35.6
TWI59G0537 Tripterygium wilfordii HOM05D007421 ORTHO05D009203 2.0e-27 127.5 357 33.1
TPR.G10446 Trifolium pratense HOM05D007421 ORTHO05D009203 2.6e-27 127.1 348 33.0
Psat7g097480 Pisum sativum HOM05D007421 ORTHO05D009203 4.4e-27 126.3 343 31.2
EL10Ac8g19356 Beta vulgaris HOM05D007421 ORTHO05D009203 1.3e-26 124.8 311 35.0
Thecc.02G143500 Theobroma cacao HOM05D007421 ORTHO05D009203 1.7e-26 124.4 271 35.1
Potri.005G176900 Populus trichocarpa HOM05D007421 ORTHO05D009203 2.9e-26 123.6 310 32.3
Cpa.g.sc0.12 Carica papaya HOM05D007421 ORTHO05D009203 6.4e-26 122.5 362 32.0
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 2.4e-25 120.6 212 39.2
Lj4g0022412 Lotus japonicus HOM05D007421 ORTHO05D009203 3.2e-25 120.2 351 32.5
Sabra05G0133500 Salix brachista HOM05D007421 ORTHO05D009203 3.2e-25 120.2 311 31.2
Haze_10776 Corylus avellana HOM05D007421 ORTHO05D009203 1.6e-24 117.9 302 34.8
Gorai.013G063400 Gossypium raimondii HOM05D007421 ORTHO05D009203 1.6e-24 117.9 300 33.7
Gohir.A13G065600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 2.0e-24 117.5 300 33.7
COL.COLO4_20870 Corchorus olitorius HOM05D007321 ORTHO05D009244 4.6e-24 116.3 323 32.8
Medtr4g094292 Medicago truncatula HOM05D007421 ORTHO05D009203 8.6e-23 112.1 369 31.4
QL11p019404 Quercus lobata HOM05D007421 ORTHO05D009203 4.3e-22 109.8 261 35.6
VMungo0251G1640 Vigna mungo HOM05D007421 ORTHO05D009203 5.6e-22 109.4 365 28.5
Glyma.08G075000 Glycine max HOM05D007421 ORTHO05D009203 9.5e-22 108.6 345 30.1
Gohir.A03G171600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 2.8e-21 107.1 316 30.7
Glyma.05G120200 Glycine max HOM05D007421 ORTHO05D009203 3.6e-21 106.7 332 34.0
Phvul.002G206600 Phaseolus vulgaris HOM05D007421 ORTHO05D009203 3.6e-21 106.7 348 29.3
Prupe.1G559900 Prunus persica HOM05D007421 ORTHO05D009203 6.2e-21 105.9 282 35.1
DCAR_001801 Daucus carota HOM05D007421 ORTHO05D009203 1.0e-20 105.1 140 44.3
Lj9C318G13 Lonicera japonica HOM05D007421 ORTHO05D009203 3.1e-20 103.6 203 36.5
SGA_v2.0_scaffold332G48944 Striga asiatica HOM05D007421 ORTHO05D009203 5.2e-20 102.8 370 30.5
Gohir.D13G056100 Gossypium hirsutum HOM05D007421 ORTHO05D009203 2.6e-19 100.5 211 35.5
Gorai.005G217800 Gossypium raimondii HOM05D007421 ORTHO05D009203 3.4e-19 100.1 273 29.3
FvH4_5g30620 Fragaria vesca HOM05D007421 ORTHO05D009203 3.2e-17 93.6 255 41.2
FAN18G4438 Fragaria x ananassa HOM05D007421 ORTHO05D009203 3.2e-17 93.6 265 40.4
Aqoxy5G02013 Aquilegia oxysepala HOM05D007421 ORTHO05D009203 5.4e-17 92.8 322 28.9
ECA236G4083 Erigeron canadensis HOM05D007421 ORTHO05D009203 1.6e-16 91.3 321 29.3
RcHm_v2.0_Chr7g0225501 Rosa chinensis HOM05D007421 ORTHO05D009203 4.6e-16 89.7 282 33.3
Migut.B00638 Erythranthe guttata HOM05D007421 ORTHO05D009203 1.3e-15 88.2 252 32.5
Ah.09g232060 Amaranthus hybridus HOM05D007421 ORTHO05D009203 1.7e-15 87.8 309 29.1
Atru.chr6.906 Acer truncatum HOM05D007421 ORTHO05D009203 2.3e-15 87.4 257 29.6
MD08G1222100 Malus domestica HOM05D007421 ORTHO05D009203 6.6e-15 85.9 220 33.2
Potri.002G084750 Populus trichocarpa HOM05D007421 ORTHO05D009203 6.6e-15 85.9 296 28.7
CDE02G3538 Ceratophyllum demersum HOM05D007421 ORTHO05D009203 7.3e-14 82.4 133 40.6
MBI07_g32548_MAGBIO Magnolia biondii HOM05D007421 ORTHO05D009203 1.8e-12 77.8 194 35.1
RcHm_v2.0_Chr5g0049711 Rosa chinensis HOM05D007421 ORTHO05D009203 1.8e-12 77.8 166 34.3
FAN04G0435 Fragaria x ananassa HOM05D007421 ORTHO05D009203 1.5e-11 74.7 266 36.5
RcHm_v2.0_Chr7g0236151 Rosa chinensis HOM05D007421 ORTHO05D009203 4.4e-11 73.2 149 35.6
Ciclev10003479m.g Citrus clementina HOM05D007421 ORTHO05D009203 7.5e-11 72.4 289 28.4
CANSAT11G0077 Cannabis sativa HOM05D007421 ORTHO05D009203 8.3e-10 68.9 152 33.6
Eucgr.I02692 Eucalyptus grandis HOM05D007421 ORTHO05D009203 2.4e-09 67.4 232 31.0
Gohir.D02G194950 Gossypium hirsutum HOM05D007421 ORTHO05D009203 5.4e-09 66.2 306 26.1
SEGI_03000 Sequoiadendron giganteum HOM05D007421 ORTHO05D009203 7.1e-09 65.9 99 35.4
HPP92_013365 Vanilla planifolia HOM05D007421 ORTHO05D009203 7.1e-09 65.9 147 34.7
ATR0753G155 Amborella trichopoda HOM05D007421 ORTHO05D009203 1.6e-08 64.7 89 39.3
Hma1.2p1_0012F.1_g007610 Hydrangea macrophylla HOM05D007421 ORTHO05D009203 1.3e-07 61.6 60 51.7
GSVIVG01022264001 Vitis vinifera HOM05D007421 ORTHO05D009203 1.7e-07 61.2 126 34.1
CBR_g30215 Chara braunii HOM05D002710 ORTHO05D009203 5.6e-06 56.2 63 46.0
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 5.6e-06 56.2 34 58.8
SMO198G0058 Selaginella moellendorffii HOM05D002710 ORTHO05D002905 5.6e-06 56.2 34 58.8
MELO3C024933.2 Cucumis melo HOM05D007421 ORTHO05D009203 9.5e-06 55.5 93 36.6
RcHm_v2.0_Chr7g0231151 Rosa chinensis HOM05D007421 ORTHO05D009203 9.5e-06 55.5 66 45.5


User provided reference genes

Program Settings