Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g045750.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 7.1e-47 190.3 98 100.0
BcaC05g26880 Brassica carinata HOM05D003666 ORTHO05D004770 4.8e-19 97.8 69 76.8
BNapus_Darmor_BZH_scaffold_234p00230 Brassica napus HOM05D003666 ORTHO05D004770 4.8e-19 97.8 69 76.8
Nitab4.5_0006007g0010 Nicotiana tabacum HOM05D003666 ORTHO05D004770 1.1e-18 96.7 69 76.8
Solyc00g500172.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 1.1e-18 96.7 69 76.8
Solyc00g500189.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 1.1e-18 96.7 69 76.8
Solyc00g500253.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 1.1e-18 96.7 69 76.8
Aa31csc553G70 Aethionema arabicum HOM05D003666 ORTHO05D004770 1.4e-18 96.3 69 75.4
Lj2C1223T18 Lonicera japonica HOM05D003666 ORTHO05D004770 9.1e-18 93.6 69 75.4
Potri.007G061861 Populus trichocarpa HOM05D003666 ORTHO05D004770 9.1e-18 93.6 69 75.4
RcHm_v2.0_MTg0498711 Rosa chinensis HOM05D003666 ORTHO05D004770 1.2e-17 93.2 69 75.4
Aqoxy12s018 Aquilegia oxysepala HOM05D003666 ORTHO05D004770 1.6e-17 92.8 69 73.9
TAR626G1001 Trochodendron aralioides HOM05D003666 ORTHO05D004770 1.6e-17 92.8 69 73.9
Nitab4.5_0000172g1740 Nicotiana tabacum HOM05D003666 ORTHO05D004770 2.6e-17 92.0 70 72.9
ATMG00580 Arabidopsis thaliana HOM05D003666 ORTHO05D004770 3.5e-17 91.7 65 76.9
BraSC177t45766Z Brassica rapa HOM05D003666 ORTHO05D004770 3.5e-17 91.7 65 76.9
Cfa023044 Carpinus fangiana HOM05D003666 ORTHO05D004770 3.5e-17 91.7 77 68.8
Ah.10g028200 Amaranthus hybridus HOM05D003666 ORTHO05D004770 4.5e-17 91.3 69 73.9
Ah.10g028750 Amaranthus hybridus HOM05D003666 ORTHO05D004770 4.5e-17 91.3 69 73.9
Lsat_1_v5_gn_8_46780 Lactuca sativa HOM05D003666 ORTHO05D004770 5.9e-17 90.9 69 73.9
LjContig00439g0017912 Lotus japonicus HOM05D003666 ORTHO05D004770 1.7e-16 89.4 69 72.5
LjContig00439g0019818 Lotus japonicus HOM05D003666 ORTHO05D004770 1.7e-16 89.4 69 72.5
Lalb_Chr00c24g0407401 Lupinus albus HOM05D003666 ORTHO05D004770 1.7e-16 89.4 69 72.5
Medtr0082s0090 Medicago truncatula HOM05D003666 ORTHO05D004770 1.7e-16 89.4 69 72.5
TPR.G36115 Trifolium pratense HOM05D003666 ORTHO05D004770 1.7e-16 89.4 69 72.5
PSO210G0035 Papaver somniferum HOM05D003666 ORTHO05D004770 2.9e-16 88.6 75 65.3
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 2.9e-16 88.6 68 75.0
BcaC05g26875 Brassica carinata HOM05D003666 ORTHO05D004770 3.8e-16 88.2 73 67.1
CANSAT16G0036 Cannabis sativa HOM05D003666 ORTHO05D004770 6.5e-16 87.4 65 75.4
DCAR_032432 Daucus carota HOM05D003666 ORTHO05D004770 1.9e-15 85.9 65 73.8
CSS0015485 Camellia sinensis var. sinensis HOM05D003666 ORTHO05D004770 3.2e-15 85.1 65 73.8
Sed0020058 Sechium edule HOM05D003666 ORTHO05D004770 3.2e-15 85.1 65 73.8
Sed0023789 Sechium edule HOM05D003666 ORTHO05D004770 3.2e-15 85.1 65 73.8
BraSC48t46269Z Brassica rapa HOM05D003666 ORTHO05D004770 4.2e-15 84.7 60 76.7
HanXRQMTg0579201 Helianthus annuus HOM05D003666 ORTHO05D004770 4.2e-15 84.7 65 73.8
Glyma.10G098500 Glycine max HOM05D003666 ORTHO05D004770 5.5e-15 84.3 69 68.1
Gorai.001G166300 Gossypium raimondii HOM05D003666 ORTHO05D004770 1.0e-13 80.1 72 63.9
CDE02G1260 Ceratophyllum demersum HOM05D003666 ORTHO05D004770 2.6e-12 75.5 59 72.9
CARHR288310 Cardamine hirsuta HOM05D003666 ORTHO05D004770 3.7e-11 71.6 46 80.4
Nitab4.5_0000172g0120 Nicotiana tabacum HOM05D003666 ORTHO05D004770 3.7e-11 71.6 89 55.1
Solyc10g061990.3 Solanum lycopersicum HOM05D003666 ORTHO05D004770 6.3e-11 70.9 64 60.9
Ca_14829_v3 Cicer arietinum L. HOM05D003666 ORTHO05D004770 1.8e-10 69.3 75 58.7
arahy.Tifrunner.gnm1.ann1.AQ5GJP Arachis hypogaea HOM05D003666 ORTHO05D004770 1.2e-09 66.6 85 54.1
arahy.Tifrunner.gnm1.ann1.U43JHG Arachis hypogaea HOM05D003666 ORTHO05D004770 1.2e-09 66.6 53 69.8
arahy.Tifrunner.gnm1.ann1.WXF1XT Arachis hypogaea HOM05D003666 ORTHO05D004770 1.2e-09 66.6 53 69.8
SHI15675 Sapria himalayana HOM05D003666 ORTHO05D004770 1.2e-09 66.6 90 52.2
Dinv06695 Davidia involucrata HOM05D003666 ORTHO05D004770 2.0e-09 65.9 62 61.3
Lalb_Chr00c54g0413611 Lupinus albus HOM05D003666 ORTHO05D004770 2.7e-09 65.5 51 70.6
Lj2A1228G70 Lonicera japonica HOM05D003666 ORTHO05D004770 4.5e-09 64.7 53 66.0
Thhalv10015926m.g Eutrema salsugineum HOM05D003666 ORTHO05D004770 7.7e-09 63.9 50 68.0
BolSC28t60439H Brassica oleracea HOM05D003666 ORTHO05D004770 3.8e-08 61.6 46 71.7
BraSC77t46648Z Brassica rapa HOM05D003666 ORTHO05D004770 3.8e-08 61.6 47 68.1
Lsat_1_v5_gn_3_105380 Lactuca sativa HOM05D003666 ORTHO05D004770 9.4e-07 57.0 46 69.6


User provided reference genes

Program Settings