Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g045630.2 Solanum lycopersicum HOM05D004517 ORTHO05D005366 1.0e-124 450.3 263 100.0
Sopen10g015980 Solanum pennellii HOM05D004517 ORTHO05D005366 5.5e-110 401.4 238 99.2
Nitab4.5_0010875g0020 Nicotiana tabacum HOM05D004517 ORTHO05D005366 2.9e-95 352.4 250 86.8
CAN.G1577.11 Capsicum annuum HOM05D004517 ORTHO05D005366 4.2e-78 295.4 254 76.0
Oeu012748.1 Olea europaea HOM05D004517 ORTHO05D005366 7.2e-78 294.7 251 74.5
PGSC0003DMG400023789 Solanum tuberosum HOM05D004517 ORTHO05D005366 1.2e-77 293.9 251 74.9
CSS0045081 Camellia sinensis var. sinensis HOM05D004517 ORTHO05D005366 6.1e-77 291.6 262 72.5
Solyc01g104270.4 Solanum lycopersicum HOM05D004517 ORTHO05D005366 8.0e-77 291.2 251 74.5
Sopen01g046710 Solanum pennellii HOM05D004517 ORTHO05D005366 8.0e-77 291.2 251 74.5
CSS0006387 Camellia sinensis var. sinensis HOM05D004517 ORTHO05D005366 3.0e-76 289.3 262 72.1
Dinv24268 Davidia involucrata HOM05D004517 ORTHO05D005366 2.2e-74 283.1 267 70.0
MSTRG.16525 Avicennia marina HOM05D004517 ORTHO05D005366 2.4e-73 279.6 254 72.0
SalBow5G4543 Salvia bowleyana HOM05D004517 ORTHO05D005366 5.9e-72 275.0 253 71.9
TAR628G0747 Trochodendron aralioides HOM05D004517 ORTHO05D005366 1.3e-71 273.9 251 69.3
Lsat_1_v5_gn_9_118341 Lactuca sativa HOM05D004517 ORTHO05D005366 3.8e-71 272.3 255 69.4
Oeu008886.2 Olea europaea HOM05D004517 ORTHO05D005366 2.5e-70 269.6 301 62.1
CsaV3_6G037380 Cucumis sativus L. HOM05D004517 ORTHO05D005366 5.5e-70 268.5 259 68.0
Cc02_g22420 Coffea canephora HOM05D004517 ORTHO05D005366 3.6e-69 265.8 255 68.2
HanXRQChr03g0066801 Helianthus annuus HOM05D004517 ORTHO05D005366 6.1e-69 265.0 254 69.3
Migut.B00843 Erythranthe guttata HOM05D004517 ORTHO05D005366 1.4e-68 263.8 253 72.7
PGR142G2391 Punica granatum HOM05D004517 ORTHO05D005366 1.8e-68 263.5 266 67.7
Ah.03g137090 Amaranthus hybridus HOM05D004517 ORTHO05D005366 3.0e-68 262.7 253 68.8
Sc03g0005930 Simmondsia chinensis HOM05D004517 ORTHO05D005366 4.0e-68 262.3 269 68.0
Prupe.1G567400 Prunus persica HOM05D004517 ORTHO05D005366 3.4e-67 259.2 249 69.5
RcHm_v2.0_Chr7g0222671 Rosa chinensis HOM05D004517 ORTHO05D005366 3.4e-67 259.2 251 67.7
MELO3C014379.2 Cucumis melo HOM05D004517 ORTHO05D005366 4.4e-67 258.8 262 64.9
CiPaw.05G043700 Carya illinoinensis HOM05D004517 ORTHO05D005366 5.7e-67 258.5 252 66.7
Hma1.2p1_0179F.1_g079410 Hydrangea macrophylla HOM05D004517 ORTHO05D005366 7.5e-67 258.1 264 64.4
HanXRQChr06g0185081 Helianthus annuus HOM05D004517 ORTHO05D005366 9.8e-67 257.7 259 65.6
arahy.Tifrunner.gnm1.ann1.RA8HQM Arachis hypogaea HOM05D004517 ORTHO05D005366 1.3e-66 257.3 252 67.1
arahy.Tifrunner.gnm1.ann1.57R94V Arachis hypogaea HOM05D004517 ORTHO05D005366 1.7e-66 256.9 252 67.1
MD08G1228000 Malus domestica HOM05D004517 ORTHO05D005366 2.8e-66 256.1 249 67.5
ECA240G0862 Erigeron canadensis HOM05D004517 ORTHO05D005366 8.3e-66 254.6 245 66.9
MD15G1422000 Malus domestica HOM05D004517 ORTHO05D005366 8.3e-66 254.6 250 65.6
Gohir.D02G232900 Gossypium hirsutum HOM05D004517 ORTHO05D005366 1.1e-65 254.2 252 65.9
Gorai.005G260700 Gossypium raimondii HOM05D004517 ORTHO05D005366 1.1e-65 254.2 252 65.9
SGA_v2.0_scaffold1G00310 Striga asiatica HOM05D004517 ORTHO05D005366 1.1e-65 254.2 258 68.2
Gohir.A03G211300 Gossypium hirsutum HOM05D004517 ORTHO05D005366 3.1e-65 252.7 252 65.5
EL10Ac6g14070 Beta vulgaris HOM05D004517 ORTHO05D005366 1.6e-64 250.4 257 65.0
Thhalv10003985m.g Eutrema salsugineum HOM05D004517 ORTHO05D005366 3.5e-64 249.2 259 66.0
FvH4_5g29610 Fragaria vesca HOM05D004517 ORTHO05D005366 4.5e-64 248.8 257 64.6
FAN08G3228 Fragaria x ananassa HOM05D004517 ORTHO05D005366 4.5e-64 248.8 257 65.0
FAN18G2310 Fragaria x ananassa HOM05D004517 ORTHO05D005366 4.5e-64 248.8 257 64.6
FAN04G1222 Fragaria x ananassa HOM05D004517 ORTHO05D005366 5.9e-64 248.4 257 64.6
Sed0012766 Sechium edule HOM05D004517 ORTHO05D005366 7.8e-64 248.1 254 66.1
TAR381G0217 Trochodendron aralioides HOM05D004517 ORTHO05D005366 1.3e-63 247.3 241 68.0
Carub.0006s2255 Capsella rubella HOM05D004517 ORTHO05D005366 1.7e-63 246.9 253 64.4
FAN13G2755 Fragaria x ananassa HOM05D004517 ORTHO05D005366 1.7e-63 246.9 257 64.2
TWI59G1197 Tripterygium wilfordii HOM05D004517 ORTHO05D005366 2.9e-63 246.1 249 65.1
Eucgr.G00606 Eucalyptus grandis HOM05D004517 ORTHO05D005366 5.0e-63 245.4 272 61.0
Sed0014676 Sechium edule HOM05D004517 ORTHO05D005366 5.0e-63 245.4 253 65.2
AL6G36300 Arabidopsis lyrata HOM05D004517 ORTHO05D005366 8.6e-63 244.6 253 63.6
Manes.07G015100 Manihot esculenta HOM05D004517 ORTHO05D005366 8.6e-63 244.6 260 65.4
AT5G24690 Arabidopsis thaliana HOM05D004517 ORTHO05D005366 1.9e-62 243.4 253 61.7
Manes.10G130100 Manihot esculenta HOM05D004517 ORTHO05D005366 1.9e-62 243.4 258 65.5
TWI14G0624 Tripterygium wilfordii HOM05D004517 ORTHO05D005366 2.5e-62 243.0 249 64.3
unitig_578.g16342 Utricularia gibba HOM05D004517 ORTHO05D005366 3.3e-62 242.7 200 76.0
Potri.001G210500 Populus trichocarpa HOM05D004517 ORTHO05D005366 7.3e-62 241.5 255 65.5
A06p35540 Brassica napus HOM05D003313 ORTHO05D004217 9.5e-62 241.1 237 69.6
BraA06t26479Z Brassica rapa HOM05D003313 ORTHO05D004217 9.5e-62 241.1 237 69.6
Nitab4.5_0011195g0020 Nicotiana tabacum HOM05D004517 ORTHO05D005366 9.5e-62 241.1 259 58.3
Aqoxy6G00170 Aquilegia oxysepala HOM05D004517 ORTHO05D005366 2.1e-61 240.0 274 59.5
Atru.chr4.59 Acer truncatum HOM05D004517 ORTHO05D005366 2.3e-60 236.5 254 64.6
DCAR_013989 Daucus carota HOM05D004517 ORTHO05D005366 2.3e-60 236.5 263 63.9
Sp2g22710 Schrenkiella parvula HOM05D004517 ORTHO05D005366 2.3e-60 236.5 258 64.0
C07p43000 Brassica napus HOM05D003313 ORTHO05D004217 4.0e-60 235.7 213 73.7
BolC7t44829H Brassica oleracea HOM05D003313 ORTHO05D004217 4.0e-60 235.7 213 73.7
Ca_01805_v3 Cicer arietinum L. HOM05D004517 ORTHO05D005366 6.8e-60 235.0 253 65.2
Hund15513 Selenicereus undatus HOM05D004517 ORTHO05D005366 6.8e-60 235.0 255 63.1
C09p07150 Brassica napus HOM05D004517 ORTHO05D005366 8.9e-60 234.6 261 63.2
Gorai.008G041900 Gossypium raimondii HOM05D004517 ORTHO05D005366 1.5e-59 233.8 251 62.5
Gohir.D12G040200 Gossypium hirsutum HOM05D004517 ORTHO05D005366 2.0e-59 233.4 251 62.5
Psat5g246640 Pisum sativum HOM05D004517 ORTHO05D005366 2.0e-59 233.4 254 63.0
Duzib132G0873 Durio zibethinus HOM05D004517 ORTHO05D005366 2.6e-59 233.0 257 61.1
Glyma.15G047200 Glycine max HOM05D004517 ORTHO05D005366 3.4e-59 232.6 228 68.9
Gohir.A12G032100 Gossypium hirsutum HOM05D004517 ORTHO05D005366 3.4e-59 232.6 251 62.5
PGR042G1879 Punica granatum HOM05D004517 ORTHO05D005366 3.4e-59 232.6 263 63.1
Medtr2g081000 Medicago truncatula HOM05D004517 ORTHO05D005366 4.4e-59 232.3 253 64.0
VMungo0540G0447 Vigna mungo HOM05D004517 ORTHO05D005366 5.7e-59 231.9 227 67.0
Glyma.08G185500 Glycine max HOM05D004517 ORTHO05D005366 1.3e-58 230.7 225 68.4
Nitab4.5_0002245g0100 Nicotiana tabacum HOM05D004517 ORTHO05D005366 1.7e-58 230.3 257 57.6
AUR62042719 Chenopodium quinoa HOM05D004517 ORTHO05D005366 2.2e-58 229.9 217 69.1
Duzib052G0369 Durio zibethinus HOM05D004517 ORTHO05D005366 2.9e-58 229.6 253 62.5
Potri.003G019600 Populus trichocarpa HOM05D004517 ORTHO05D005366 8.3e-58 228.0 258 62.4
CiPaw.06G148000 Carya illinoinensis HOM05D004517 ORTHO05D005366 1.4e-57 227.3 230 65.2
Lalb_Chr13g0295731 Lupinus albus HOM05D004517 ORTHO05D005366 1.8e-57 226.9 255 64.7
Lalb_Chr07g0185721 Lupinus albus HOM05D004517 ORTHO05D005366 2.7e-56 223.0 241 63.5
Phvul.006G213600 Phaseolus vulgaris HOM05D004517 ORTHO05D005366 1.3e-55 220.7 227 65.2
GSVIVG01022976001 Vitis vinifera HOM05D004517 ORTHO05D005366 1.3e-55 220.7 155 85.8
Aa31LG11G3940 Aethionema arabicum HOM05D004517 ORTHO05D005366 3.0e-55 219.5 262 61.1
Lalb_Chr12g0204431 Lupinus albus HOM05D004517 ORTHO05D005366 3.0e-55 219.5 257 61.1
unitig_8.g4525 Utricularia gibba HOM05D004517 ORTHO05D005366 1.5e-54 217.2 177 78.0
PSO170G6572 Papaver somniferum HOM05D004517 ORTHO05D005366 1.9e-54 216.9 234 62.8
PSO782G4069 Papaver somniferum HOM05D004517 ORTHO05D005366 5.6e-54 215.3 234 62.4
CARHR188780 Cardamine hirsuta HOM05D004517 ORTHO05D005366 1.2e-53 214.2 256 63.3
Lj6g0021954 Lotus japonicus HOM05D004517 ORTHO05D005366 1.6e-53 213.8 259 59.1
MBI04_g04857_MAGBIO Magnolia biondii HOM05D004517 ORTHO05D005366 1.6e-53 213.8 257 56.8
CANSAT11G0269 Cannabis sativa HOM05D004517 ORTHO05D005366 2.8e-53 213.0 256 59.4
ClCG09G014350 Citrullus lanatus HOM05D004517 ORTHO05D005366 2.8e-53 213.0 347 49.0
Nitab4.5_0001706g0060 Nicotiana tabacum HOM05D004517 ORTHO05D005366 6.2e-53 211.8 250 55.2
Sabra03G0011100 Salix brachista HOM05D004517 ORTHO05D005366 8.0e-53 211.5 299 54.5
Cpa.g.sc113.67 Carica papaya HOM05D004517 ORTHO05D005366 5.2e-52 208.8 252 61.9
SalBow6G5703 Salvia bowleyana HOM05D004517 ORTHO05D005366 5.2e-52 208.8 247 51.8
THA.LOC104798997 Tarenaya hassleriana HOM05D004517 ORTHO05D005366 2.6e-51 206.5 262 59.9
THA.LOC104803318 Tarenaya hassleriana HOM05D004517 ORTHO05D005366 3.4e-51 206.1 260 60.4
COL.COLO4_17875 Corchorus olitorius HOM05D004517 ORTHO05D005366 5.8e-51 205.3 247 59.1
Thecc.02G039300 Theobroma cacao HOM05D004517 ORTHO05D005366 9.8e-51 204.5 251 59.4
CDE12G0288 Ceratophyllum demersum HOM05D004517 ORTHO05D005366 3.2e-49 199.5 249 53.4
AUR62014267 Chenopodium quinoa HOM05D004517 ORTHO05D005366 4.6e-48 195.7 218 61.9
Rhsim11G0129800 Rhododendron simsii HOM05D004517 ORTHO05D005366 8.6e-47 191.4 263 56.3
BcaNung01251 Brassica carinata HOM05D004517 ORTHO05D005366 6.2e-45 185.3 138 84.1
Haze_01662 Corylus avellana HOM05D004517 ORTHO05D005366 6.8e-44 181.8 250 47.6
Lj5A251T71 Lonicera japonica HOM05D004517 ORTHO05D005366 1.5e-43 180.6 303 51.8
QL04p096680 Quercus lobata HOM05D004517 ORTHO05D005366 4.4e-43 179.1 199 63.8
Peaxi162Scf00011g00362 Petunia axillaris HOM05D004517 ORTHO05D005366 5.8e-43 178.7 252 49.6
ATR0626G335 Amborella trichopoda HOM05D004517 ORTHO05D005366 2.2e-42 176.8 185 61.1
Actinidia00209 Actinidia chinensis HOM05D004517 ORTHO05D005366 6.0e-40 168.7 214 61.7
HPP92_010826 Vanilla planifolia HOM05D004517 ORTHO05D005366 6.0e-40 168.7 209 56.5
Sabra01G0162600 Salix brachista HOM05D004517 ORTHO05D005366 1.0e-39 167.9 255 46.3
MBI04_g44264_MAGBIO Magnolia biondii HOM05D004517 ORTHO05D005366 3.3e-38 162.9 211 50.7
Zm00001eb132890 Zea mays HOM05D004517 ORTHO05D005366 1.6e-37 160.6 198 58.1
vmacro19899 Vaccinium macrocarpon HOM05D004517 ORTHO05D005366 3.1e-36 156.4 293 46.1
QL04p096840 Quercus lobata HOM05D004517 ORTHO05D005366 5.8e-35 152.1 120 73.3
Zm00001eb409840 Zea mays HOM05D004517 ORTHO05D005366 3.8e-34 149.4 243 51.0
vmacro01764 Vaccinium macrocarpon HOM05D004517 ORTHO05D005366 5.4e-33 145.6 263 41.1
CBR_g4430 Chara braunii HOM05D004517 ORTHO05D005366 1.9e-30 137.1 174 54.0
SMO141G0185 Selaginella moellendorffii HOM05D004517 ORTHO05D005366 1.8e-28 130.6 156 55.8
AagrBONN_evm.TU.Sc2ySwM_117.369 Anthoceros agrestis HOM05D004517 ORTHO05D005366 3.1e-28 129.8 165 52.1
Mapoly0047s0079 Marchantia polymorpha HOM05D004517 ORTHO05D005366 4.0e-28 129.4 188 53.7
Pp3c6_100 Physcomitrium patens HOM05D004517 ORTHO05D005366 3.4e-27 126.3 186 51.6
Pp3c6_102 Physcomitrium patens HOM05D004517 ORTHO05D005366 3.4e-27 126.3 186 51.6
AagrBONN_evm.TU.Sc2ySwM_117.1242 Anthoceros agrestis HOM05D004517 ORTHO05D005366 5.8e-27 125.6 165 57.6
Hma1.2p1_0323F.1_g125170 Hydrangea macrophylla HOM05D004517 ORTHO05D005366 3.2e-25 119.8 83 71.1
Pp3c25_13880 Physcomitrium patens HOM05D004517 ORTHO05D005366 4.2e-25 119.4 193 48.7
Pp3c16_21290 Physcomitrium patens HOM05D004517 ORTHO05D005366 7.8e-24 115.2 186 49.5
AUR62029115 Chenopodium quinoa HOM05D004517 ORTHO05D005366 1.0e-23 114.8 159 49.1
Hma1.2p1_3753F.1_g337500 Hydrangea macrophylla HOM05D004517 ORTHO05D005366 1.0e-23 114.8 80 72.5
Haze_01689 Corylus avellana HOM05D004517 ORTHO05D005366 1.3e-23 114.4 73 76.7
BolC9t53629H Brassica oleracea HOM05D003313 ORTHO05D004217 2.3e-23 113.6 189 54.5
BraA09t36286Z Brassica rapa HOM05D000010 ORTHO05D000063 8.1e-21 105.1 185 53.5
CDE01G0126 Ceratophyllum demersum HOM05D004517 ORTHO05D005366 1.2e-19 101.3 72 73.6
Actinidia39043 Actinidia chinensis HOM05D004517 ORTHO05D005366 1.0e-15 88.2 138 47.8
AagrBONN_evm.TU.Sc2ySwM_117.1240 Anthoceros agrestis HOM05D004517 ORTHO05D005366 3.9e-15 86.3 85 52.9
AUR62033129 Chenopodium quinoa HOM05D004517 ORTHO05D005366 1.9e-14 84.0 72 54.2
Cre09.g387000 Chlamydomonas reinhardtii HOM05D004517 ORTHO05D005366 3.3e-14 83.2 159 45.9
MCO11G267 Micromonas commoda HOM05D004517 ORTHO05D005366 1.3e-13 81.3 157 38.9
Actinidia39044 Actinidia chinensis HOM05D004517 ORTHO05D005366 1.2e-11 74.7 40 90.0
Actinidia24676 Actinidia chinensis HOM05D004517 ORTHO05D005366 5.8e-11 72.4 42 85.7
TPR.G15461 Trifolium pratense HOM05D004517 ORTHO05D005366 8.4e-10 68.6 127 43.3
QL04p096640 Quercus lobata HOM05D004517 ORTHO05D005366 2.4e-09 67.0 42 76.2
QL04p096712 Quercus lobata HOM05D004517 ORTHO05D005366 5.5e-09 65.9 114 50.0
QL10p026162 Quercus lobata HOM05D004517 ORTHO05D005366 3.5e-08 63.2 85 47.1
Sc03g0006070 Simmondsia chinensis HOM05D004517 ORTHO05D005366 1.3e-07 61.2 78 48.7
PRCOL_00006290 Prasinoderma coloniale HOM05D004517 ORTHO05D005366 2.5e-06 57.0 45 57.8


User provided reference genes

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