Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g045580.1 Solanum lycopersicum HOM05D001638 ORTHO05D003216 4.1e-22 107.1 51 100.0
PGSC0003DMG400017823 Solanum tuberosum HOM05D001638 ORTHO05D003216 2.3e-20 101.3 51 92.2
CAN.G781.20 Capsicum annuum HOM05D001638 ORTHO05D003216 1.4e-17 92.0 49 85.7
Nitab4.5_0006891g0020 Nicotiana tabacum HOM05D001638 ORTHO05D003216 1.2e-16 89.0 51 82.4
Peaxi162Scf00750g00019 Petunia axillaris HOM05D001638 ORTHO05D003216 8.4e-15 82.8 51 76.5
TPR.G23953 Trifolium pratense HOM05D001638 ORTHO05D003216 7.6e-08 59.7 48 52.1
CAN.G100.81 Capsicum annuum HOM05D001638 ORTHO05D003216 2.2e-07 58.2 48 50.0
CARHR261710 Cardamine hirsuta HOM05D001638 ORTHO05D003216 2.9e-07 57.8 48 52.1
Glyma.10G012800 Glycine max HOM05D001638 ORTHO05D003216 2.9e-07 57.8 48 47.9
TPR.G38671 Trifolium pratense HOM05D001638 ORTHO05D003216 2.9e-07 57.8 48 47.9
AT5G40382 Arabidopsis thaliana HOM05D001638 ORTHO05D003216 3.8e-07 57.4 48 50.0
Prupe.1G195500 Prunus persica HOM05D001638 ORTHO05D003216 3.8e-07 57.4 48 50.0
Solyc01g079420.4 Solanum lycopersicum HOM05D001638 ORTHO05D003216 3.8e-07 57.4 48 47.9
PGSC0003DMG400009043 Solanum tuberosum HOM05D001638 ORTHO05D003216 3.8e-07 57.4 48 47.9
unitig_21.g20668 Utricularia gibba HOM05D001638 ORTHO05D003216 4.9e-07 57.0 48 45.8
Migut.K00176 Erythranthe guttata HOM05D001638 ORTHO05D003216 6.4e-07 56.6 48 47.9
FvH4_5g39150 Fragaria vesca HOM05D001638 ORTHO05D003216 6.4e-07 56.6 48 45.8
FAN01G0763 Fragaria x ananassa HOM05D001638 ORTHO05D003216 6.4e-07 56.6 48 45.8
FAN01G2961 Fragaria x ananassa HOM05D001638 ORTHO05D003216 6.4e-07 56.6 48 45.8
FAN08G0348 Fragaria x ananassa HOM05D001638 ORTHO05D003216 6.4e-07 56.6 48 45.8
FAN18G1380 Fragaria x ananassa HOM05D001638 ORTHO05D003216 6.4e-07 56.6 48 45.8
Psat6g161560 Pisum sativum HOM05D001638 ORTHO05D003216 6.4e-07 56.6 48 45.8
RcHm_v2.0_Chr7g0241161 Rosa chinensis HOM05D001638 ORTHO05D003216 6.4e-07 56.6 48 47.9
unitig_744.g24162 Utricularia gibba HOM05D001638 ORTHO05D003216 8.4e-07 56.2 48 45.8
DCAR_012353 Daucus carota HOM05D001638 ORTHO05D003216 1.1e-06 55.8 48 47.9
DCAR_018297 Daucus carota HOM05D001638 ORTHO05D003216 1.1e-06 55.8 48 47.9
HanXRQChr02g0032541 Helianthus annuus HOM05D035699 ORTHO05D003216 1.1e-06 55.8 50 54.0
Lsat_1_v5_gn_6_83381 Lactuca sativa HOM05D005190 ORTHO05D006183 1.1e-06 55.8 48 45.8
Prupe.3G288700 Prunus persica HOM05D001638 ORTHO05D003216 1.1e-06 55.8 48 43.8
SalBow1G2549 Salvia bowleyana HOM05D001638 ORTHO05D003216 1.1e-06 55.8 48 47.9
SalBow1G7233 Salvia bowleyana HOM05D001638 ORTHO05D003216 1.1e-06 55.8 48 47.9
Aa31LG10G16330 Aethionema arabicum HOM05D001638 ORTHO05D003216 1.4e-06 55.5 48 47.9
AL4G46940 Arabidopsis lyrata HOM05D001638 ORTHO05D003216 1.4e-06 55.5 48 47.9
Nitab4.5_0003540g0050 Nicotiana tabacum HOM05D001638 ORTHO05D003216 1.4e-06 55.5 48 45.8
Aa31LG1G28680 Aethionema arabicum HOM05D001638 ORTHO05D003216 1.9e-06 55.1 48 47.9
AL213U10010 Arabidopsis lyrata HOM05D001638 ORTHO05D003216 1.9e-06 55.1 48 45.8
AL7G49510 Arabidopsis lyrata HOM05D001638 ORTHO05D003216 1.9e-06 55.1 48 47.9
Lsat_1_v5_gn_3_12840 Lactuca sativa HOM05D001638 ORTHO05D003216 1.9e-06 55.1 48 43.8
Lj5g0025307 Lotus japonicus HOM05D001638 ORTHO05D003216 1.9e-06 55.1 48 47.9
MD04G1041800 Malus domestica HOM05D001638 ORTHO05D003216 1.9e-06 55.1 48 50.0
SEGI_02450 Sequoiadendron giganteum HOM05D001638 ORTHO05D003216 1.9e-06 55.1 48 47.9
THA.LOC104800344 Tarenaya hassleriana HOM05D001638 ORTHO05D003216 1.9e-06 55.1 46 52.2
arahy.Tifrunner.gnm1.ann1.5C2WXX Arachis hypogaea HOM05D001638 ORTHO05D003216 2.4e-06 54.7 48 45.8
BcaB06g27497 Brassica carinata HOM05D001638 ORTHO05D003216 2.4e-06 54.7 48 47.9
A04p13420 Brassica napus HOM05D001638 ORTHO05D003216 2.4e-06 54.7 48 47.9
C04p47140 Brassica napus HOM05D001638 ORTHO05D003216 2.4e-06 54.7 48 47.9
BolC4t26311H Brassica oleracea HOM05D001638 ORTHO05D003216 2.4e-06 54.7 48 47.9
BraA04t17000Z Brassica rapa HOM05D001638 ORTHO05D003216 2.4e-06 54.7 48 47.9
CSS0007254 Camellia sinensis var. sinensis HOM05D000924 ORTHO05D007614 2.4e-06 54.7 49 51.0
CARHR142770 Cardamine hirsuta HOM05D001638 ORTHO05D003216 2.4e-06 54.7 48 47.9
Migut.H00090 Erythranthe guttata HOM05D001638 ORTHO05D003216 2.4e-06 54.7 48 50.0
Thhalv10001714m.g Eutrema salsugineum HOM05D001638 ORTHO05D003216 2.4e-06 54.7 48 45.8
BcaB02g08779 Brassica carinata HOM05D001638 ORTHO05D003216 3.2e-06 54.3 48 43.8
BcaC01g05032 Brassica carinata HOM05D001638 ORTHO05D003216 3.2e-06 54.3 48 43.8
A03p25940 Brassica napus HOM05D001638 ORTHO05D003216 3.2e-06 54.3 48 43.8
C03p30940 Brassica napus HOM05D001638 ORTHO05D003216 3.2e-06 54.3 48 43.8
C04p00560 Brassica napus HOM05D001638 ORTHO05D003216 3.2e-06 54.3 48 43.8
BraA03t11811Z Brassica rapa HOM05D001638 ORTHO05D003216 3.2e-06 54.3 48 43.8
Carub.0004s3010 Capsella rubella HOM05D001638 ORTHO05D003216 3.2e-06 54.3 48 43.8
Thhalv10006359m.g Eutrema salsugineum HOM05D001638 ORTHO05D003216 3.2e-06 54.3 48 45.8
Nitab4.5_0002682g0040 Nicotiana tabacum HOM05D001638 ORTHO05D003216 3.2e-06 54.3 48 45.8
BcaB01g03169 Brassica carinata HOM05D001638 ORTHO05D003216 4.2e-06 53.9 48 43.8
BolC3t15445H Brassica oleracea HOM05D001638 ORTHO05D003216 4.2e-06 53.9 46 45.7
Carub.0005s2912 Capsella rubella HOM05D001638 ORTHO05D003216 4.2e-06 53.9 48 45.8
Cpa.g.sc18.46 Carica papaya HOM05D001638 ORTHO05D003216 4.2e-06 53.9 48 45.8
Glyma.02G012400 Glycine max HOM05D001638 ORTHO05D003216 4.2e-06 53.9 48 43.8
Gohir.D08G140300 Gossypium hirsutum HOM05D001638 ORTHO05D003216 4.2e-06 53.9 48 43.8
Rhsim13G0004900 Rhododendron simsii HOM05D001902 ORTHO05D001973 4.2e-06 53.9 48 45.8
AT2G47380 Arabidopsis thaliana HOM05D001638 ORTHO05D003216 5.4e-06 53.5 48 45.8
BcaC02g06970 Brassica carinata HOM05D001638 ORTHO05D003216 5.4e-06 53.5 48 43.8
BcaC02g06971 Brassica carinata HOM05D001638 ORTHO05D003216 5.4e-06 53.5 48 43.8
C04p72750 Brassica napus HOM05D001638 ORTHO05D003216 5.4e-06 53.5 48 43.8
BolC4t28756H Brassica oleracea HOM05D001638 ORTHO05D003216 5.4e-06 53.5 48 43.8
CSS0006822 Camellia sinensis var. sinensis HOM05D001638 ORTHO05D003216 5.4e-06 53.5 48 45.8
CiPaw.07G117700 Carya illinoinensis HOM05D001638 ORTHO05D003216 5.4e-06 53.5 48 43.8
Ca_10254_v3 Cicer arietinum L. HOM05D001638 ORTHO05D003216 5.4e-06 53.5 48 41.7
Ca_10282_v3 Cicer arietinum L. HOM05D001638 ORTHO05D003216 5.4e-06 53.5 48 41.7
DCAR_021711 Daucus carota HOM05D001638 ORTHO05D003216 5.4e-06 53.5 48 45.8
Eucgr.J02226 Eucalyptus grandis HOM05D001638 ORTHO05D003216 5.4e-06 53.5 48 50.0
SHI13740 Sapria himalayana HOM05D001638 ORTHO05D003216 5.4e-06 53.5 48 47.9
Thecc.01G313800 Theobroma cacao HOM05D001638 ORTHO05D003216 5.4e-06 53.5 48 41.7
CANSAT25G1899 Cannabis sativa HOM05D001638 ORTHO05D003216 7.1e-06 53.1 48 45.8
CANSAT25G3833 Cannabis sativa HOM05D001638 ORTHO05D003216 7.1e-06 53.1 48 45.8
CANSAT54G2114 Cannabis sativa HOM05D001638 ORTHO05D003216 7.1e-06 53.1 48 45.8
CARHR054380 Cardamine hirsuta HOM05D001638 ORTHO05D003216 7.1e-06 53.1 48 45.8
ClCG10G014000 Citrullus lanatus HOM05D001638 ORTHO05D003216 7.1e-06 53.1 48 52.1
Migut.J01567 Erythranthe guttata HOM05D001638 ORTHO05D003216 7.1e-06 53.1 48 43.8
Atru.chr6.2351 Acer truncatum HOM05D000924 ORTHO05D007614 9.3e-06 52.8 47 46.8
CARHR172740 Cardamine hirsuta HOM05D001638 ORTHO05D003216 9.3e-06 52.8 48 43.8
Eucgr.K03546 Eucalyptus grandis HOM05D001638 ORTHO05D003216 9.3e-06 52.8 48 43.8
Gohir.A07G128700 Gossypium hirsutum HOM05D001638 ORTHO05D003216 9.3e-06 52.8 48 43.8
Gohir.D07G133100 Gossypium hirsutum HOM05D001638 ORTHO05D003216 9.3e-06 52.8 48 43.8
MBI10_g27628_MAGBIO Magnolia biondii HOM05D001638 ORTHO05D003216 9.3e-06 52.8 48 43.8
THA.LOC104827668 Tarenaya hassleriana HOM05D001638 ORTHO05D003216 9.3e-06 52.8 46 50.0


User provided reference genes

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