Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g044535.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 7.8e-80 300.4 155 100.0
Peaxi162Scf00379g00087 Petunia axillaris HOM05D005015 ORTHO05D005696 3.9e-47 191.8 236 53.0
Potri.013G137900 Populus trichocarpa HOM05D005015 ORTHO05D005696 1.4e-41 173.3 199 54.8
CSS0020927 Camellia sinensis var. sinensis HOM05D005015 ORTHO05D005696 1.9e-41 172.9 199 55.8
PGR111G0021 Punica granatum HOM05D005015 ORTHO05D005696 1.9e-41 172.9 198 55.1
CAN.G877.4 Capsicum annuum HOM05D005015 ORTHO05D005696 5.4e-41 171.4 199 54.8
LjContig00489g0021854 Lotus japonicus HOM05D005015 ORTHO05D005696 7.1e-41 171.0 199 54.8
BolSC46t60983H Brassica oleracea HOM05D005015 ORTHO05D005696 3.0e-39 165.6 199 51.8
Sed0007367 Sechium edule HOM05D005015 ORTHO05D005696 6.6e-39 164.5 199 52.8
Sed0025514 Sechium edule HOM05D005015 ORTHO05D005696 6.6e-39 164.5 199 52.8
Solyc00g500322.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 1.1e-38 163.7 199 53.8
BolSC29t60569H Brassica oleracea HOM05D005015 ORTHO05D005696 4.3e-38 161.8 199 51.3
BolSC37t60772H Brassica oleracea HOM05D005015 ORTHO05D005696 4.3e-38 161.8 199 51.8
BraSC140t45592Z Brassica rapa HOM05D005015 ORTHO05D005696 4.3e-38 161.8 199 51.8
Lsat_1_v5_gn_1_38680 Lactuca sativa HOM05D005015 ORTHO05D005696 7.3e-38 161.0 199 52.8
BolSC45t60933H Brassica oleracea HOM05D005015 ORTHO05D005696 2.1e-37 159.5 201 51.2
CARHR281880 Cardamine hirsuta HOM05D005015 ORTHO05D005696 2.8e-37 159.1 199 51.3
ATCG00130 Arabidopsis thaliana HOM05D005015 ORTHO05D005696 3.6e-37 158.7 199 50.8
DCAR_032470 Daucus carota HOM05D005015 ORTHO05D005696 8.1e-37 157.5 197 51.8
BraSC140t45595Z Brassica rapa HOM05D005015 ORTHO05D005696 1.1e-36 157.1 198 51.5
Ah.10g027630 Amaranthus hybridus HOM05D005015 ORTHO05D005696 5.3e-36 154.8 199 50.8
Aa31csc39G190 Aethionema arabicum HOM05D005015 ORTHO05D005696 1.2e-35 153.7 200 51.0
RcHm_v2.0_CPg0502451 Rosa chinensis HOM05D005015 ORTHO05D005696 1.2e-35 153.7 199 50.8
Hund03959 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.6e-35 152.5 199 50.8
Hund19316 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.6e-35 152.5 199 50.8
Hund27454 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.6e-35 152.5 199 50.8
Hund27640 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.6e-35 152.5 199 50.8
Hund27652 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.6e-35 152.5 199 50.8
Hund27672 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.6e-35 152.5 199 50.8
Hund27697 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.6e-35 152.5 199 50.8
Hund27742 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.6e-35 152.5 199 50.8
Hund27807 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.6e-35 152.5 199 50.8
Hund27824 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.6e-35 152.5 199 50.8
Hund27931 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.6e-35 152.5 199 50.8
Hund27946 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.6e-35 152.5 199 50.8
Hund27994 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.6e-35 152.5 199 50.8
Hund28016 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.6e-35 152.5 199 50.8
Hund28060 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.6e-35 152.5 199 50.8
Hund28129 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.6e-35 152.5 199 50.8
Hund28142 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.6e-35 152.5 199 50.8
Hund28151 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.6e-35 152.5 199 50.8
Hund28161 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.6e-35 152.5 199 50.8
Hund28177 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.6e-35 152.5 199 50.8
Hund28187 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.6e-35 152.5 199 50.8
Hund28210 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.6e-35 152.5 199 50.8
Hund28258 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.6e-35 152.5 199 50.8
Hund28390 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.6e-35 152.5 199 50.8
Hund28502 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.6e-35 152.5 199 50.8
Hund28650 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.6e-35 152.5 199 50.8
Hund28906 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.6e-35 152.5 199 50.8
Hund29887 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.6e-35 152.5 199 50.8
Hund30205 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.6e-35 152.5 199 50.8
Hund30312 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.6e-35 152.5 199 50.8
Hund30436 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.6e-35 152.5 199 50.8
Hund30665 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.6e-35 152.5 199 50.8
Hund31017 Selenicereus undatus HOM05D005015 ORTHO05D005696 2.6e-35 152.5 199 50.8
LjContig00318g0021444 Lotus japonicus HOM05D005015 ORTHO05D005696 3.4e-35 152.1 197 50.3
Peaxi162Scf00211g00235 Petunia axillaris HOM05D000743 ORTHO05D005696 4.5e-35 151.8 199 51.8
BolSC45t60880H Brassica oleracea HOM05D005015 ORTHO05D005696 1.7e-34 149.8 192 51.0
Sed0007878 Sechium edule HOM05D005015 ORTHO05D005696 6.4e-34 147.9 167 53.9
EL10As12g24014 Beta vulgaris HOM05D000743 ORTHO05D000580 1.4e-33 146.7 192 50.5
Solyc00g500333.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 1.2e-32 143.7 169 53.3
Gohir.A10G065880 Gossypium hirsutum HOM05D005015 ORTHO05D005696 3.3e-30 135.6 156 53.8
BraSC179t45790Z Brassica rapa HOM05D005015 ORTHO05D005696 5.8e-27 124.8 191 48.2
Hma1.2p1_2181F.1_g316260 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 1.8e-23 113.2 133 53.4
Hma1.2p1_2181F.1_g316275 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 1.8e-23 113.2 133 53.4
HanXRQChr00c0313g0573431 Helianthus annuus HOM05D000743 ORTHO05D000580 3.0e-23 112.5 174 47.7
HanXRQChr04g0120711 Helianthus annuus HOM05D000743 ORTHO05D000580 3.0e-23 112.5 174 47.7
HanXRQChr08g0210221 Helianthus annuus HOM05D000743 ORTHO05D000580 3.0e-23 112.5 174 47.7
HanXRQChr11g0326651 Helianthus annuus HOM05D000743 ORTHO05D000580 3.0e-23 112.5 174 47.7
HanXRQCPg0579841 Helianthus annuus HOM05D000743 ORTHO05D000580 3.0e-23 112.5 174 47.7
Solyc02g012020.3 Solanum lycopersicum HOM05D005015 ORTHO05D005696 3.0e-23 112.5 132 53.8
Migut.D01410 Erythranthe guttata HOM05D005015 ORTHO05D005696 8.7e-23 110.9 153 49.0
CAN.G612.5 Capsicum annuum HOM05D005015 ORTHO05D005696 3.3e-22 109.0 133 52.6
Eucgr.H02991 Eucalyptus grandis HOM05D005015 ORTHO05D005696 3.3e-22 109.0 169 43.8
Cpa.g.sc30.79 Carica papaya HOM05D005015 ORTHO05D005696 7.4e-22 107.8 142 50.0
BolSC49t61201H Brassica oleracea HOM05D005015 ORTHO05D005696 3.7e-21 105.5 129 52.7
BraSC143t45677Z Brassica rapa HOM05D005015 ORTHO05D005696 3.7e-21 105.5 129 52.7
BNapus_Darmor_BZH_scaffold_253p00020 Brassica napus HOM05D005015 ORTHO05D005696 6.2e-21 104.8 133 49.6
Ah.10g027770 Amaranthus hybridus HOM05D005015 ORTHO05D005696 1.4e-20 103.6 133 50.4
Hund10285 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.8e-20 103.2 132 51.5
Hund30552 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.8e-20 103.2 132 51.5
Hund30554 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.8e-20 103.2 132 51.5
Lj2C1239T52 Lonicera japonica HOM05D005015 ORTHO05D005696 6.9e-20 101.3 133 50.4
Gohir.A11G101400 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.0e-19 99.8 128 51.6
BolSC29t60447H Brassica oleracea HOM05D005015 ORTHO05D005696 2.6e-19 99.4 99 58.6
Lalb_Chr03g0042651 Lupinus albus HOM05D005015 ORTHO05D005696 2.6e-19 99.4 132 50.0
Nitab4.5_0027992g0020 Nicotiana tabacum HOM05D005015 ORTHO05D005696 2.2e-18 96.3 129 50.4
arahy.Tifrunner.gnm1.ann1.6U43FV Arachis hypogaea HOM05D005015 ORTHO05D005696 1.1e-17 94.0 123 50.4
Lalb_Chr08g0232621 Lupinus albus HOM05D005015 ORTHO05D005696 1.9e-17 93.2 131 47.3
Medtr0002s0540 Medicago truncatula HOM05D005015 ORTHO05D005696 4.2e-17 92.0 130 45.4
HanXRQChr00c0746g0577131 Helianthus annuus HOM05D005015 ORTHO05D005696 9.3e-17 90.9 86 62.8
Glyma.12G231900 Glycine max HOM05D005015 ORTHO05D005696 2.1e-16 89.7 124 48.4
CAN.G386.8 Capsicum annuum HOM05D000216 ORTHO05D001131 4.6e-16 88.6 117 50.4
Nitab4.5_0000435g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 4.6e-16 88.6 87 58.6
BraSC140t45611Z Brassica rapa HOM05D005015 ORTHO05D005696 6.1e-16 88.2 97 57.7
Nitab4.5_0005637g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 7.9e-16 87.8 116 50.9
arahy.Tifrunner.gnm1.ann1.VXR7WZ Arachis hypogaea HOM05D005015 ORTHO05D005696 1.8e-15 86.7 125 46.4
CAN.G1648.11 Capsicum annuum HOM05D000216 ORTHO05D005696 1.8e-15 86.7 66 69.7
Gorai.003G134800 Gossypium raimondii HOM05D005015 ORTHO05D005696 2.3e-15 86.3 130 46.9
TWI34G0268 Tripterygium wilfordii HOM05D005015 ORTHO05D005696 3.0e-15 85.9 128 46.9
BraSC25t45885Z Brassica rapa HOM05D005015 ORTHO05D005696 3.9e-15 85.5 66 66.7
A03p46590 Brassica napus HOM05D005015 ORTHO05D005696 6.7e-15 84.7 51 78.4
Gorai.011G231900 Gossypium raimondii HOM05D005015 ORTHO05D005696 6.7e-15 84.7 103 50.5
Gohir.D10G206350 Gossypium hirsutum HOM05D005015 ORTHO05D005696 8.7e-15 84.3 103 52.4
BraSC58t46477Z Brassica rapa HOM05D005015 ORTHO05D005696 1.5e-14 83.6 67 64.2
SabraPtG0000800 Salix brachista HOM05D000743 ORTHO05D000580 1.9e-14 83.2 123 45.5
Gohir.A05G314033 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.6e-13 80.1 81 58.0
Nitab4.5_0003775g0050 Nicotiana tabacum HOM05D005015 ORTHO05D005696 1.6e-13 80.1 51 80.4
Psat0s2754g0200 Pisum sativum HOM05D000743 ORTHO05D000580 1.1e-12 77.4 117 47.0
Psat1g003840 Pisum sativum HOM05D000743 ORTHO05D000580 1.1e-12 77.4 117 47.0
Psat6g219360 Pisum sativum HOM05D000743 ORTHO05D000580 1.1e-12 77.4 117 47.0
arahy.Tifrunner.gnm1.ann1.MI951N Arachis hypogaea HOM05D005015 ORTHO05D005696 1.4e-12 77.0 83 53.0
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 1.4e-12 77.0 78 57.7
PSO548G0131 Papaver somniferum HOM05D005015 ORTHO05D005696 4.1e-12 75.5 43 86.0
HanXRQChr00c0300g0573221 Helianthus annuus HOM05D005015 ORTHO05D005696 1.2e-11 73.9 47 78.7
Migut.D01335 Erythranthe guttata HOM05D005015 ORTHO05D005696 2.0e-11 73.2 54 68.5
Gohir.D03G128101 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.6e-11 72.8 81 55.6
Psat0s2288g0080 Pisum sativum HOM05D000743 ORTHO05D000580 2.6e-11 72.8 80 52.5
BolSC44t60844H Brassica oleracea HOM05D005015 ORTHO05D005696 4.5e-11 72.0 81 56.8
BraSC151t45691Z Brassica rapa HOM05D005015 ORTHO05D005696 7.7e-11 71.2 73 53.4
MD16G1272100 Malus domestica HOM05D005015 ORTHO05D005696 7.7e-11 71.2 42 83.3
Medtr1g109420 Medicago truncatula HOM05D005015 ORTHO05D005696 7.7e-11 71.2 114 43.9
Gohir.A10G201450 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.3e-10 70.5 46 76.1
Psat0s1586g0080 Pisum sativum HOM05D000743 ORTHO05D000580 1.3e-10 70.5 118 44.1
Hma1.2p1_0414F.1_g147700 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 2.2e-10 69.7 43 79.1
Gohir.D01G157951 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.9e-10 69.3 43 79.1
arahy.Tifrunner.gnm1.ann1.XNS64L Arachis hypogaea HOM05D001387 ORTHO05D005696 1.9e-09 66.6 109 42.2
Gorai.002G106400 Gossypium raimondii HOM05D005015 ORTHO05D005696 4.2e-09 65.5 81 46.9
SEGI_04828 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 2.1e-08 63.2 133 37.6
SEGI_35208 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 2.1e-08 63.2 133 37.6
Lalb_Chr07g0191421 Lupinus albus HOM05D005015 ORTHO05D005696 4.6e-08 62.0 45 68.9
Lalb_Chr09g0335321 Lupinus albus HOM05D005015 ORTHO05D005696 6.1e-08 61.6 45 68.9
HanXRQChr00c0272g0573041 Helianthus annuus HOM05D005015 ORTHO05D005696 1.1e-06 57.4 45 71.1
Lalb_Chr07g0192191 Lupinus albus HOM05D005015 ORTHO05D005696 1.1e-06 57.4 46 67.4
Peaxi162Scf00027g00003 Petunia axillaris HOM05D005015 ORTHO05D005696 3.3e-06 55.8 63 55.6
SEGI_03619 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 3.3e-06 55.8 51 56.9
HanXRQChr10g0282491 Helianthus annuus HOM05D000743 ORTHO05D000580 5.7e-06 55.1 111 39.6


User provided reference genes

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