Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g038060.2 Solanum lycopersicum HOM05D004975 ORTHO05D005963 9.5e-80 300.1 146 100.0
Solyc08g065760.3 Solanum lycopersicum HOM05D004975 ORTHO05D005963 3.8e-60 235.0 172 70.9
Sopen10g033590 Solanum pennellii HOM05D004975 ORTHO05D005963 3.8e-60 235.0 172 70.9
PGSC0003DMG400013829 Solanum tuberosum HOM05D004975 ORTHO05D005963 3.8e-60 235.0 172 70.9
Nitab4.5_0000250g0160 Nicotiana tabacum HOM05D004975 ORTHO05D005963 6.7e-57 224.2 172 67.4
Peaxi162Scf00105g00510 Petunia axillaris HOM05D004975 ORTHO05D005963 5.3e-54 214.5 173 67.1
Nitab4.5_0002393g0070 Nicotiana tabacum HOM05D004975 ORTHO05D005963 8.4e-52 207.2 172 65.1
Cc08_g08560 Coffea canephora HOM05D004975 ORTHO05D005963 2.2e-44 182.6 182 56.0
MSTRG.11721 Avicennia marina HOM05D004975 ORTHO05D005963 1.6e-42 176.4 180 55.6
CSS0002597 Camellia sinensis var. sinensis HOM05D004975 ORTHO05D005963 3.5e-42 175.3 173 54.9
CAN.G886.9 Capsicum annuum HOM05D004975 ORTHO05D005963 4.6e-42 174.9 147 62.6
RcHm_v2.0_Chr6g0305011 Rosa chinensis HOM05D004975 ORTHO05D005963 3.9e-41 171.8 182 53.3
FvH4_2g36661 Fragaria vesca HOM05D004975 ORTHO05D005963 5.1e-41 171.4 182 53.3
Sopen08g019440 Solanum pennellii HOM05D004975 ORTHO05D005963 5.1e-41 171.4 139 65.5
FAN20G1154 Fragaria x ananassa HOM05D007251 ORTHO05D009266 6.7e-41 171.0 182 53.3
Gohir.A07G060900 Gossypium hirsutum HOM05D004975 ORTHO05D005963 6.7e-41 171.0 174 53.4
EL10Ac2g04836 Beta vulgaris HOM05D004975 ORTHO05D005963 1.5e-40 169.9 172 53.5
Dinv30242 Davidia involucrata HOM05D004975 ORTHO05D005963 1.9e-40 169.5 177 53.7
Gorai.001G069100 Gossypium raimondii HOM05D004975 ORTHO05D005963 2.5e-40 169.1 174 52.9
Gohir.D07G065600 Gossypium hirsutum HOM05D004975 ORTHO05D005963 4.3e-40 168.3 174 52.9
Duzib168G2230 Durio zibethinus HOM05D004975 ORTHO05D005963 5.7e-40 167.9 179 51.4
Hma1.2p1_0140F.1_g063690 Hydrangea macrophylla HOM05D004975 ORTHO05D005963 9.7e-40 167.2 179 53.6
CiPaw.01G062200 Carya illinoinensis HOM05D004975 ORTHO05D005963 1.3e-39 166.8 182 52.2
Sc24g0001980 Simmondsia chinensis HOM05D004975 ORTHO05D005963 1.6e-39 166.4 177 52.5
Duzib187G1289 Durio zibethinus HOM05D004975 ORTHO05D005963 2.8e-39 165.6 178 51.1
SGA_v2.0_scaffold27G11528 Striga asiatica HOM05D004975 ORTHO05D005963 2.8e-39 165.6 173 53.2
Migut.A00251 Erythranthe guttata HOM05D004975 ORTHO05D005963 3.7e-39 165.2 175 52.6
SGA_v2.0_scaffold229G43318 Striga asiatica HOM05D004975 ORTHO05D005963 3.7e-39 165.2 169 53.3
THA.LOC104803875 Tarenaya hassleriana HOM05D004975 ORTHO05D005963 8.2e-39 164.1 177 53.1
CiPaw.08G019900 Carya illinoinensis HOM05D004975 ORTHO05D005963 1.1e-38 163.7 159 57.2
COL.COLO4_19031 Corchorus olitorius HOM05D004975 ORTHO05D005963 1.1e-38 163.7 181 50.3
FAN06G0478 Fragaria x ananassa HOM05D004975 ORTHO05D005963 1.4e-38 163.3 182 52.2
HanXRQChr11g0341541 Helianthus annuus HOM05D004975 ORTHO05D005963 1.4e-38 163.3 173 53.8
Lsat_1_v5_gn_1_49060 Lactuca sativa HOM05D004975 ORTHO05D005963 1.4e-38 163.3 145 58.6
MD08G1128100 Malus domestica HOM05D004975 ORTHO05D005963 1.4e-38 163.3 181 51.4
HanXRQChr01g0029381 Helianthus annuus HOM05D004975 ORTHO05D005963 1.8e-38 162.9 172 52.9
Glyma.12G071700 Glycine max HOM05D004975 ORTHO05D005963 4.1e-38 161.8 128 63.3
QL12p025158 Quercus lobata HOM05D004975 ORTHO05D005963 4.1e-38 161.8 145 58.6
Actinidia13302 Actinidia chinensis HOM05D004975 ORTHO05D005963 6.9e-38 161.0 172 54.7
EL10Ac4g08846 Beta vulgaris HOM05D004975 ORTHO05D005963 1.2e-37 160.2 168 51.8
Glyma.11G153169 Glycine max HOM05D004975 ORTHO05D005963 1.2e-37 160.2 128 61.7
GSVIVG01009932001 Vitis vinifera HOM05D004975 ORTHO05D005963 1.2e-37 160.2 182 51.6
DCAR_007697 Daucus carota HOM05D004975 ORTHO05D005963 3.4e-37 158.7 161 54.7
Hund22233 Selenicereus undatus HOM05D004975 ORTHO05D005963 3.4e-37 158.7 175 50.9
Actinidia13417 Actinidia chinensis HOM05D004975 ORTHO05D005963 4.5e-37 158.3 176 52.3
Ciclev10009422m.g Citrus clementina HOM05D004975 ORTHO05D005963 4.5e-37 158.3 183 50.8
CsaV3_3G001030 Cucumis sativus L. HOM05D004975 ORTHO05D005963 4.5e-37 158.3 159 56.0
PGR044G1665 Punica granatum HOM05D004975 ORTHO05D005963 4.5e-37 158.3 149 57.0
Prupe.1G459900 Prunus persica HOM05D004975 ORTHO05D005963 5.9e-37 157.9 179 50.8
Eucgr.H01931 Eucalyptus grandis HOM05D004975 ORTHO05D005963 1.0e-36 157.1 154 53.9
Phvul.011G072600 Phaseolus vulgaris HOM05D004975 ORTHO05D005963 1.0e-36 157.1 128 60.2
Thecc.09G007400 Theobroma cacao HOM05D004975 ORTHO05D005963 1.0e-36 157.1 145 55.9
TWI34G1428 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 1.0e-36 157.1 163 54.0
Ah.06g191340 Amaranthus hybridus HOM05D004975 ORTHO05D005963 2.2e-36 156.0 176 50.6
MBI16_g41808_MAGBIO Magnolia biondii HOM05D004975 ORTHO05D005963 2.2e-36 156.0 85 83.5
MD15G1107600 Malus domestica HOM05D004975 ORTHO05D005963 2.2e-36 156.0 141 56.0
VMungo1127G2243 Vigna mungo HOM05D004975 ORTHO05D005963 2.2e-36 156.0 128 60.2
Cpa.g.sc6.221 Carica papaya HOM05D004975 ORTHO05D005963 2.9e-36 155.6 182 48.9
ClCG10G000990 Citrullus lanatus HOM05D004975 ORTHO05D005963 2.9e-36 155.6 145 56.6
Potri.018G006900 Populus trichocarpa HOM05D004975 ORTHO05D005963 2.9e-36 155.6 145 53.8
ECA248G0122 Erigeron canadensis HOM05D004975 ORTHO05D005963 3.8e-36 155.2 173 51.4
PSO063G2087 Papaver somniferum HOM05D004975 ORTHO05D005963 8.5e-36 154.1 160 55.6
PSO170G1562 Papaver somniferum HOM05D004975 ORTHO05D005963 8.5e-36 154.1 160 55.6
Atru.chr7.2646 Acer truncatum HOM05D004975 ORTHO05D005963 1.4e-35 153.3 92 77.2
Aa31LG2G18860 Aethionema arabicum HOM05D004975 ORTHO05D005963 1.4e-35 153.3 151 55.6
ECA248G2823 Erigeron canadensis HOM05D004975 ORTHO05D005963 1.4e-35 153.3 172 50.6
Rhsim04G0150100 Rhododendron simsii HOM05D004975 ORTHO05D005963 1.4e-35 153.3 176 52.8
Sed0019969 Sechium edule HOM05D004975 ORTHO05D005963 1.9e-35 152.9 172 48.8
AL7G20600 Arabidopsis lyrata HOM05D004975 ORTHO05D005963 2.5e-35 152.5 159 55.3
Lalb_Chr18g0045061 Lupinus albus HOM05D004975 ORTHO05D005963 2.5e-35 152.5 128 59.4
PSO063G4606 Papaver somniferum HOM05D004975 ORTHO05D005963 2.5e-35 152.5 156 55.1
Hund06848 Selenicereus undatus HOM05D004975 ORTHO05D005963 2.5e-35 152.5 121 62.8
TWI63G0658 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 2.5e-35 152.5 92 77.2
CANSAT64G0033 Cannabis sativa HOM05D004975 ORTHO05D005963 3.2e-35 152.1 160 55.0
Manes.17G086700 Manihot esculenta HOM05D004975 ORTHO05D005963 3.2e-35 152.1 121 62.8
unitig_46.g18530 Utricularia gibba HOM05D004975 ORTHO05D005963 3.2e-35 152.1 126 61.9
Aqoxy7G00181 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 4.2e-35 151.8 85 83.5
MELO3C013792.2 Cucumis melo HOM05D004975 ORTHO05D005963 4.2e-35 151.8 156 53.8
arahy.Tifrunner.gnm1.ann1.1NF0KF Arachis hypogaea HOM05D004975 ORTHO05D005963 5.5e-35 151.4 121 62.8
Medtr1g007480 Medicago truncatula HOM05D004975 ORTHO05D005963 5.5e-35 151.4 121 62.0
Os07g0544900 Oryza sativa ssp. japonica HOM05D004975 ORTHO05D005963 7.2e-35 151.0 92 76.1
TPR.G24523 Trifolium pratense HOM05D004975 ORTHO05D005963 7.2e-35 151.0 121 62.8
arahy.Tifrunner.gnm1.ann1.GL41SS Arachis hypogaea HOM05D004975 ORTHO05D005963 9.4e-35 150.6 121 62.8
FvH4_7g03740 Fragaria vesca HOM05D004975 ORTHO05D005963 1.2e-34 150.2 85 82.4
Psat6g036480 Pisum sativum HOM05D004975 ORTHO05D005963 1.2e-34 150.2 121 62.0
CANSAT25G3538 Cannabis sativa HOM05D004975 ORTHO05D005963 1.6e-34 149.8 125 60.8
Lj3g0002799 Lotus japonicus HOM05D004975 ORTHO05D005963 1.6e-34 149.8 119 62.2
Lj3g0015990 Lotus japonicus HOM05D004975 ORTHO05D005963 1.6e-34 149.8 119 62.2
TAR383G0773 Trochodendron aralioides HOM05D004975 ORTHO05D005963 1.6e-34 149.8 162 52.5
TAR625G0147 Trochodendron aralioides HOM05D004975 ORTHO05D005963 2.1e-34 149.4 162 51.9
arahy.Tifrunner.gnm1.ann1.KS8K1P Arachis hypogaea HOM05D004975 ORTHO05D005963 2.7e-34 149.1 121 62.0
BcaB03g12697 Brassica carinata HOM05D004975 ORTHO05D005963 2.7e-34 149.1 85 81.2
BcaC01g01087 Brassica carinata HOM05D004975 ORTHO05D005963 2.7e-34 149.1 85 81.2
BcaNung04586 Brassica carinata HOM05D004975 ORTHO05D005963 2.7e-34 149.1 85 81.2
A01p06810 Brassica napus HOM05D004975 ORTHO05D005963 2.7e-34 149.1 85 81.2
A08p18600 Brassica napus HOM05D004975 ORTHO05D005963 2.7e-34 149.1 85 81.2
C01p07550 Brassica napus HOM05D004975 ORTHO05D005963 2.7e-34 149.1 85 81.2
C03p87960 Brassica napus HOM05D004975 ORTHO05D005963 2.7e-34 149.1 85 81.2
BolC1t00736H Brassica oleracea HOM05D004975 ORTHO05D005963 2.7e-34 149.1 85 81.2
BolC3t21107H Brassica oleracea HOM05D004975 ORTHO05D005963 2.7e-34 149.1 85 81.2
BraA01t00633Z Brassica rapa HOM05D004975 ORTHO05D005963 2.7e-34 149.1 85 81.2
BraA08t33823Z Brassica rapa HOM05D004975 ORTHO05D005963 2.7e-34 149.1 85 81.2
Carub.0007s0909 Capsella rubella HOM05D004975 ORTHO05D005963 2.7e-34 149.1 85 81.2
Thhalv10026230m.g Eutrema salsugineum HOM05D004975 ORTHO05D005963 2.7e-34 149.1 85 81.2
Sp7g29320 Schrenkiella parvula HOM05D004975 ORTHO05D005963 2.7e-34 149.1 85 81.2
HPP92_011116 Vanilla planifolia HOM05D004975 ORTHO05D005963 2.7e-34 149.1 101 70.3
Zm00001eb323470 Zea mays HOM05D004975 ORTHO05D005963 2.7e-34 149.1 85 81.2
PSO782G1312 Papaver somniferum HOM05D004975 ORTHO05D005963 3.6e-34 148.7 86 77.9
TAR383G0873 Trochodendron aralioides HOM05D004975 ORTHO05D005963 3.6e-34 148.7 85 80.0
Ca_12771_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 4.6e-34 148.3 101 69.3
BcaC09g51928 Brassica carinata HOM05D004975 ORTHO05D005963 1.0e-33 147.1 85 80.0
Zm00001eb106440 Zea mays HOM05D004975 ORTHO05D005963 1.0e-33 147.1 85 78.8
AT4G31460 Arabidopsis thaliana HOM05D004975 ORTHO05D005963 1.4e-33 146.7 85 80.0
CARHR239350 Cardamine hirsuta HOM05D004975 ORTHO05D005963 1.4e-33 146.7 139 55.4
ATR0580G184 Amborella trichopoda HOM05D004975 ORTHO05D005963 5.1e-33 144.8 100 67.0
CDE05G0021 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 5.1e-33 144.8 145 54.5
CDE02G4585 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 3.3e-32 142.1 85 77.6
SHI04272 Sapria himalayana HOM05D004975 ORTHO05D005963 5.7e-32 141.4 105 65.7
SMO367G1088 Selaginella moellendorffii HOM05D004975 ORTHO05D005963 1.8e-30 136.3 97 67.0
HPP92_011121 Vanilla planifolia HOM05D004975 ORTHO05D005963 5.3e-30 134.8 89 73.0
Lj7C709T7 Lonicera japonica HOM05D004975 ORTHO05D005963 1.2e-29 133.7 143 52.4
SEGI_29047 Sequoiadendron giganteum HOM05D004975 ORTHO05D005963 1.5e-29 133.3 124 54.8
Pp3c2_35700 Physcomitrium patens HOM05D004975 ORTHO05D005963 1.3e-28 130.2 92 65.2
arahy.Tifrunner.gnm1.ann1.57HDZK Arachis hypogaea HOM05D004975 ORTHO05D005963 6.5e-28 127.9 121 57.0
Mapoly0026s0002 Marchantia polymorpha HOM05D004975 ORTHO05D005963 8.5e-28 127.5 84 70.2
Oeu031567.1 Olea europaea HOM05D004975 ORTHO05D005963 1.1e-27 127.1 151 48.3
AagrBONN_evm.TU.Sc2ySwM_117.1642 Anthoceros agrestis HOM05D004975 ORTHO05D005963 4.2e-27 125.2 83 68.7
Sabra18G0014600 Salix brachista HOM05D004975 ORTHO05D005963 3.9e-25 118.6 231 33.8
AUR62027460 Chenopodium quinoa HOM05D004975 ORTHO05D005963 6.7e-25 117.9 151 47.7
Cfa013273 Carpinus fangiana HOM05D004975 ORTHO05D005963 2.6e-24 115.9 140 47.9
Haze_21744 Corylus avellana HOM05D004975 ORTHO05D005963 1.3e-23 113.6 76 68.4
Nn2g12690 Nelumbo nucifera HOM05D004975 ORTHO05D005963 2.2e-23 112.8 58 87.9
vmacro05353 Vaccinium macrocarpon HOM05D004975 ORTHO05D005963 3.1e-22 109.0 97 56.7
Manes.15G137600 Manihot esculenta HOM05D004975 ORTHO05D005963 4.1e-22 108.6 131 48.9
Ca_29761_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 9.1e-22 107.5 74 66.2
BcaNung01521 Brassica carinata HOM05D004975 ORTHO05D005963 3.8e-20 102.1 94 57.4
BcaNung04139 Brassica carinata HOM05D004975 ORTHO05D005963 3.8e-20 102.1 94 57.4
BcaC01g01097 Brassica carinata HOM05D004975 ORTHO05D005963 4.2e-19 98.6 60 76.7
C03p88060 Brassica napus HOM05D004975 ORTHO05D005963 7.2e-19 97.8 58 77.6
PRCOL_00000323 Prasinoderma coloniale HOM05D004975 ORTHO05D005963 2.8e-15 85.9 92 48.9
Cfa025056 Carpinus fangiana HOM05D004975 ORTHO05D005963 1.3e-12 77.0 136 41.9
CBR_g8145 Chara braunii HOM05D004975 ORTHO05D005963 7.2e-11 71.2 51 64.7
CiPaw.07G212300 Carya illinoinensis HOM05D004975 ORTHO05D005963 2.1e-10 69.7 48 70.8
Aqoxy3G03669 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 8.8e-09 64.3 47 59.6
AagrBONN_evm.TU.Sc2ySwM_368.1480 Anthoceros agrestis HOM05D001654 ORTHO05D002773 9.7e-08 60.8 46 54.3
Sopen10g011390 Solanum pennellii HOM05D004975 ORTHO05D005963 5.3e-06 55.1 28 89.3


User provided reference genes

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