Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 2.4e-204 715.3 361 100.0
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 2.3e-199 698.7 361 98.1
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 3.5e-176 621.7 358 88.5
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 3.6e-152 542.0 362 76.0
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 2.4e-148 529.3 361 73.7
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 1.9e-145 519.6 363 74.4
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 4.8e-141 505.0 349 72.2
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 6.3e-141 504.6 377 70.0
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 8.2e-141 504.2 360 70.8
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 4.5e-139 498.4 362 69.3
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 6.5e-138 494.6 362 69.3
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 8.5e-138 494.2 362 70.4
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 1.5e-137 493.4 363 71.3
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 1.2e-136 490.3 368 70.1
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 3.6e-136 488.8 364 69.8
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 1.0e-135 487.3 364 69.8
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 1.4e-135 486.9 367 70.8
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 1.8e-135 486.5 364 69.5
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 2.3e-135 486.1 364 70.6
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 3.0e-135 485.7 363 70.2
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 4.0e-135 485.3 362 70.4
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 5.2e-135 485.0 360 70.0
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 8.8e-135 484.2 360 68.6
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 8.8e-135 484.2 370 69.2
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 1.2e-134 483.8 365 70.7
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 1.5e-134 483.4 362 70.4
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 9.8e-134 480.7 363 69.4
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 9.8e-134 480.7 363 70.0
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 3.7e-133 478.8 359 71.0
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 6.3e-133 478.0 368 68.8
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 6.3e-133 478.0 360 68.1
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 1.1e-132 477.2 360 69.7
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.1e-132 477.2 373 67.6
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 1.4e-132 476.9 360 67.5
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 1.6e-131 473.4 370 68.4
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 2.0e-131 473.0 373 66.8
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 1.0e-130 470.7 365 68.8
Nitab4.5_0004786g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.0e-130 470.7 349 73.4
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 1.7e-130 469.9 363 68.6
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 3.8e-130 468.8 360 68.3
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 6.5e-130 468.0 363 68.3
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 2.5e-129 466.1 360 68.3
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 3.2e-129 465.7 385 64.7
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 4.2e-129 465.3 362 67.4
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 9.4e-129 464.2 365 67.1
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 1.2e-128 463.8 350 67.7
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 2.1e-128 463.0 364 67.0
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 3.6e-128 462.2 327 73.1
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 3.6e-128 462.2 364 66.2
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 1.8e-127 459.9 365 66.6
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 3.0e-127 459.1 362 67.7
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 5.7e-126 454.9 365 66.0
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 1.3e-125 453.8 360 66.9
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 2.8e-125 452.6 358 62.6
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 3.7e-125 452.2 368 64.7
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 1.1e-124 450.7 327 71.9
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 1.8e-124 449.9 343 68.5
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 5.4e-124 448.4 429 59.2
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 1.0e-122 444.1 342 66.7
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 1.3e-122 443.7 325 64.6
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 2.3e-122 443.0 362 64.4
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 3.8e-122 442.2 327 70.9
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 5.0e-122 441.8 362 65.2
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 6.6e-122 441.4 360 63.9
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 1.1e-121 440.7 358 61.2
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 4.3e-121 438.7 365 64.7
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 5.6e-121 438.3 320 72.2
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 1.6e-120 436.8 360 62.8
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 2.8e-120 436.0 361 64.5
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 3.6e-120 435.6 352 66.2
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 4.7e-120 435.3 329 69.9
Nitab4.5_0001299g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 4.7e-120 435.3 334 66.8
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 6.1e-120 434.9 364 64.6
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 1.0e-119 434.1 352 65.3
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 1.0e-119 434.1 377 63.1
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 4.0e-119 432.2 354 65.3
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 8.9e-119 431.0 328 68.9
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 1.5e-118 430.3 361 64.0
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 2.0e-118 429.9 328 68.6
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 7.5e-118 427.9 328 68.3
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 6.4e-117 424.9 363 63.4
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 6.4e-117 424.9 359 63.2
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 8.3e-117 424.5 363 62.5
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 1.8e-116 423.3 360 57.2
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 2.4e-116 422.9 433 55.0
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 4.1e-116 422.2 376 60.4
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 3.5e-115 419.1 359 63.2
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 7.8e-115 417.9 329 67.5
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 3.9e-114 415.6 360 61.4
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 5.6e-113 411.8 352 58.5
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 1.2e-112 410.6 352 61.9
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 1.5e-110 403.7 317 68.5
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 3.4e-110 402.5 360 58.3
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 7.5e-110 401.4 360 58.6
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.7e-109 400.2 360 59.4
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 6.4e-109 398.3 334 63.5
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 2.0e-107 393.3 323 66.3
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 2.7e-107 392.9 266 69.2
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 4.6e-107 392.1 325 66.2
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 1.7e-106 390.2 359 58.2
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 2.5e-105 386.3 360 57.5
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 3.3e-105 386.0 329 62.0
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 2.1e-104 383.3 360 56.1
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 2.8e-104 382.9 327 63.3
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 8.1e-104 381.3 366 57.7
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 2.3e-103 379.8 369 57.2
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 5.2e-103 378.6 360 57.5
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 6.8e-103 378.3 327 62.7
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 8.9e-103 377.9 361 56.2
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 1.3e-101 374.0 353 52.1
Manes.07G005000 Manihot esculenta HOM05D003920 ORTHO05D004877 1.7e-101 373.6 297 66.3
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 2.2e-101 373.2 329 61.7
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 2.9e-101 372.9 357 55.7
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 1.1e-100 370.9 353 56.9
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 1.2e-99 367.5 346 56.4
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 1.6e-99 367.1 353 56.9
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 3.5e-99 365.9 349 56.7
Hund03665 Selenicereus undatus HOM05D003920 ORTHO05D004877 1.0e-98 364.4 329 62.6
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 1.3e-98 364.0 346 56.9
AUR62023057 Chenopodium quinoa HOM05D003920 ORTHO05D004877 1.3e-98 364.0 299 65.6
Gohir.A08G145200 Gossypium hirsutum HOM05D003920 ORTHO05D004877 3.6e-96 355.9 292 67.5
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 3.6e-96 355.9 348 56.0
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 4.0e-95 352.4 413 48.9
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 1.4e-92 344.0 275 61.1
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 4.1e-92 342.4 270 63.7
Actinidia24671 Actinidia chinensis HOM05D003920 ORTHO05D004877 3.5e-91 339.3 285 61.4
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 5.1e-90 335.5 342 55.3
vmacro08182 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 8.6e-90 334.7 297 61.6
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 1.1e-89 334.3 225 68.0
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 2.4e-87 326.6 360 54.7
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 8.9e-87 324.7 188 75.5
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 1.3e-85 320.9 360 52.5
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 2.2e-85 320.1 219 66.2
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 9.3e-84 314.7 327 50.8
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 2.7e-83 313.2 334 47.3
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 7.8e-83 311.6 328 55.8
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 5.1e-82 308.9 316 51.6
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 4.3e-81 305.8 360 48.3
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 2.4e-79 300.1 329 52.0
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 1.4e-76 290.8 360 46.7
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 2.4e-76 290.0 334 51.8
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 2.7e-75 286.6 335 49.6
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 3.5e-75 286.2 223 61.0
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 6.0e-75 285.4 328 52.1
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 1.1e-73 281.2 332 50.9
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 1.5e-73 280.8 332 50.9
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 2.1e-72 276.9 331 49.5
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 6.2e-72 275.4 332 50.0
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 3.1e-71 273.1 335 50.7
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 9.0e-71 271.6 333 48.0
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 1.3e-69 267.7 329 49.8
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 2.9e-69 266.5 329 49.5
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 2.9e-69 266.5 336 49.4
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 6.4e-69 265.4 337 49.9
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 5.5e-68 262.3 249 55.0
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 3.0e-58 229.9 219 47.5
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 4.8e-56 222.6 320 44.7
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 4.1e-55 219.5 323 42.7
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 7.6e-54 215.3 334 45.8
Nitab4.5_0003190g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 5.5e-52 209.1 208 52.9
PRCOL_00005356 Prasinoderma coloniale HOM05D003920 ORTHO05D004877 2.3e-50 203.8 372 37.9
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 3.9e-50 203.0 109 84.4
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 1.1e-49 201.4 110 83.6
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.5e-38 164.5 93 78.5
TPR.G31394 Trifolium pratense HOM05D002628 ORTHO05D002785 2.8e-16 90.5 113 37.2
QL04p032014 Quercus lobata HOM05D003920 ORTHO05D004877 3.2e-12 77.0 38 81.6
QL04p032319 Quercus lobata HOM05D003920 ORTHO05D004877 7.2e-12 75.9 48 66.7
Cc02_g27780 Coffea canephora HOM05D003920 ORTHO05D017698 9.5e-12 75.5 43 81.4
QL04p005704 Quercus lobata HOM05D003920 ORTHO05D004877 2.1e-11 74.3 66 63.6
BolC8t48153H Brassica oleracea HOM05D003920 ORTHO05D017698 8.3e-08 62.4 44 65.9
BolC8t49779H Brassica oleracea HOM05D003920 ORTHO05D017698 8.3e-08 62.4 40 72.5
BraA08t34788Z Brassica rapa HOM05D003920 ORTHO05D017698 8.3e-08 62.4 40 72.5
MBI17_g06171_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D017698 2.4e-07 60.8 42 64.3
QL05p013448 Quercus lobata HOM05D001342 ORTHO05D017698 2.4e-07 60.8 45 68.9
QL93p2025_0050 Quercus lobata HOM05D003920 ORTHO05D337666 7.8e-06 55.8 30 83.3


User provided reference genes

Program Settings