Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g037980.2 Solanum lycopersicum HOM05D006442 ORTHO05D007980 9.9e-76 286.6 133 100.0
Sopen10g011600 Solanum pennellii HOM05D006442 ORTHO05D007980 1.1e-74 283.1 133 99.2
PGSC0003DMG400026375 Solanum tuberosum HOM05D006442 ORTHO05D007980 2.7e-73 278.5 133 96.2
CAN.G1110.8 Capsicum annuum HOM05D006442 ORTHO05D007980 3.7e-70 268.1 130 93.1
Peaxi162Scf00045g00327 Petunia axillaris HOM05D006442 ORTHO05D007980 2.5e-66 255.4 130 89.2
CAN.G1076.12 Capsicum annuum HOM05D006442 ORTHO05D007980 3.0e-64 248.4 129 89.9
Nitab4.5_0002012g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 3.0e-64 248.4 129 88.4
Rhsim07G0053100 Rhododendron simsii HOM05D006442 ORTHO05D007980 1.8e-61 239.2 129 80.6
Oeu064276.1 Olea europaea HOM05D006442 ORTHO05D007980 2.4e-61 238.8 130 80.0
Dinv43911 Davidia involucrata HOM05D006442 ORTHO05D007980 3.1e-61 238.4 130 80.0
FvH4_7g00510 Fragaria vesca HOM05D006442 ORTHO05D007980 9.0e-61 236.9 130 80.0
FAN06G2479 Fragaria x ananassa HOM05D006442 ORTHO05D007980 9.0e-61 236.9 130 80.0
FAN10G1890 Fragaria x ananassa HOM05D006442 ORTHO05D007980 9.0e-61 236.9 130 80.0
Prupe.2G007200 Prunus persica HOM05D006442 ORTHO05D007980 9.0e-61 236.9 129 82.2
MD07G1004900 Malus domestica HOM05D006442 ORTHO05D007980 1.2e-60 236.5 129 82.2
Hma1.2p1_0010F.1_g007050 Hydrangea macrophylla HOM05D006442 ORTHO05D007980 1.5e-60 236.1 129 82.9
FAN03G1462 Fragaria x ananassa HOM05D006442 ORTHO05D007980 2.0e-60 235.7 130 79.2
Manes.10G148300 Manihot esculenta HOM05D006442 ORTHO05D007980 1.0e-59 233.4 130 80.0
CSS0016496 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 1.3e-59 233.0 129 80.6
CSS0031684 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 1.3e-59 233.0 129 80.6
MSTRG.28085 Avicennia marina HOM05D006442 ORTHO05D007980 1.7e-59 232.6 130 77.7
Cfa010728 Carpinus fangiana HOM05D006442 ORTHO05D007980 1.7e-59 232.6 129 76.7
Cc02_g27370 Coffea canephora HOM05D006442 ORTHO05D007980 2.9e-59 231.9 129 79.1
Glyma.15G271700 Glycine max HOM05D006442 ORTHO05D007980 2.9e-59 231.9 129 79.8
Atru.chr11.2670 Acer truncatum HOM05D006442 ORTHO05D007980 5.0e-59 231.1 130 79.2
Potri.001G225500 Populus trichocarpa HOM05D006442 ORTHO05D007980 5.0e-59 231.1 130 79.2
GSVIVG01032037001 Vitis vinifera HOM05D006442 ORTHO05D007980 5.0e-59 231.1 130 77.7
Cc02_g27340 Coffea canephora HOM05D006442 ORTHO05D007980 6.5e-59 230.7 129 78.3
Glyma.08G151500 Glycine max HOM05D006442 ORTHO05D007980 6.5e-59 230.7 129 79.1
RcHm_v2.0_Chr1g0314301 Rosa chinensis HOM05D006442 ORTHO05D007980 6.5e-59 230.7 130 77.7
Lsat_1_v5_gn_8_7620 Lactuca sativa HOM05D006442 ORTHO05D007980 8.5e-59 230.3 129 77.5
VMungo1080G0583 Vigna mungo HOM05D006442 ORTHO05D007980 8.5e-59 230.3 129 79.1
arahy.Tifrunner.gnm1.ann1.9R1925 Arachis hypogaea HOM05D006442 ORTHO05D007980 1.1e-58 229.9 131 76.3
arahy.Tifrunner.gnm1.ann1.A55RA3 Arachis hypogaea HOM05D006442 ORTHO05D007980 1.1e-58 229.9 131 76.3
Actinidia20688 Actinidia chinensis HOM05D006442 ORTHO05D007980 1.4e-58 229.6 129 78.3
Haze_03245 Corylus avellana HOM05D006442 ORTHO05D007980 1.4e-58 229.6 129 76.0
Actinidia21568 Actinidia chinensis HOM05D006442 ORTHO05D007980 1.9e-58 229.2 129 77.5
TWI09G1159 Tripterygium wilfordii HOM05D006442 ORTHO05D007980 2.5e-58 228.8 130 76.9
TPR.G12183 Trifolium pratense HOM05D006442 ORTHO05D007980 3.2e-58 228.4 129 78.3
Ciclev10033058m.g Citrus clementina HOM05D006442 ORTHO05D007980 5.5e-58 227.6 130 77.7
CiPaw.12G060500 Carya illinoinensis HOM05D006442 ORTHO05D007980 7.2e-58 227.3 129 76.7
Lj3g0007274 Lotus japonicus HOM05D006442 ORTHO05D007980 9.4e-58 226.9 129 76.7
VMungo1080G0430 Vigna mungo HOM05D006442 ORTHO05D007980 9.4e-58 226.9 131 74.8
DCAR_006304 Daucus carota HOM05D006442 ORTHO05D007980 1.2e-57 226.5 129 78.3
TAR633G2790 Trochodendron aralioides HOM05D006442 ORTHO05D007980 1.6e-57 226.1 129 75.2
PGR042G3140 Punica granatum HOM05D006442 ORTHO05D007980 2.7e-57 225.3 130 74.6
SalBow5G2051 Salvia bowleyana HOM05D006442 ORTHO05D007980 2.7e-57 225.3 131 75.6
Phvul.005G037200 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 1.0e-56 223.4 129 76.0
Oeu013593.2 Olea europaea HOM05D006442 ORTHO05D007980 1.8e-56 222.6 130 75.4
AUR62023154 Chenopodium quinoa HOM05D006442 ORTHO05D007980 5.1e-56 221.1 129 75.2
Phvul.005G038700 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 5.1e-56 221.1 131 74.8
Ah.16g101020 Amaranthus hybridus HOM05D006442 ORTHO05D007980 8.8e-56 220.3 132 74.2
HanXRQChr01g0018511 Helianthus annuus HOM05D006442 ORTHO05D007980 8.8e-56 220.3 129 76.0
Eucgr.G03402 Eucalyptus grandis HOM05D006442 ORTHO05D007980 1.1e-55 219.9 129 73.6
AUR62009476 Chenopodium quinoa HOM05D006442 ORTHO05D007980 1.5e-55 219.5 132 73.5
Nn2g15582 Nelumbo nucifera HOM05D006442 ORTHO05D007980 1.5e-55 219.5 129 74.4
Nn7g36056 Nelumbo nucifera HOM05D006442 ORTHO05D007980 2.0e-55 219.2 130 73.8
Sabra16G0134100 Salix brachista HOM05D006442 ORTHO05D007980 2.0e-55 219.2 130 75.4
Sc14g0005190 Simmondsia chinensis HOM05D006442 ORTHO05D007980 3.3e-55 218.4 132 70.5
Medtr3g027090 Medicago truncatula HOM05D006442 ORTHO05D007980 4.3e-55 218.0 129 74.4
Gohir.D09G099100 Gossypium hirsutum HOM05D006442 ORTHO05D007980 5.7e-55 217.6 132 72.7
Gorai.006G116100 Gossypium raimondii HOM05D006442 ORTHO05D007980 5.7e-55 217.6 132 72.7
ECA248G1263 Erigeron canadensis HOM05D006442 ORTHO05D007980 7.4e-55 217.2 130 73.8
Aqoxy1G00188 Aquilegia oxysepala HOM05D006442 ORTHO05D007980 9.7e-55 216.9 129 74.4
Migut.N01489 Erythranthe guttata HOM05D006442 ORTHO05D007980 1.3e-54 216.5 130 73.1
CANSAT01G1452 Cannabis sativa HOM05D006442 ORTHO05D007980 2.2e-54 215.7 129 76.0
Gohir.A09G099700 Gossypium hirsutum HOM05D006442 ORTHO05D007980 3.7e-54 214.9 132 71.2
Duzib133G0004 Durio zibethinus HOM05D006442 ORTHO05D007980 6.3e-54 214.2 132 69.7
Psat5g207000 Pisum sativum HOM05D006442 ORTHO05D007980 6.3e-54 214.2 129 73.6
SGA_v2.0_scaffold10G05439 Striga asiatica HOM05D006442 ORTHO05D007980 6.3e-54 214.2 130 72.3
Sed0019847 Sechium edule HOM05D006442 ORTHO05D007980 1.8e-53 212.6 130 73.1
EL10Ac2g04436 Beta vulgaris HOM05D006442 ORTHO05D007980 2.4e-53 212.2 132 71.2
PSO384G2221 Papaver somniferum HOM05D006442 ORTHO05D007980 4.1e-53 211.5 130 72.3
PSO339G0425 Papaver somniferum HOM05D006442 ORTHO05D007980 9.1e-53 210.3 130 72.3
SGA_v2.0_scaffold4G02243 Striga asiatica HOM05D006442 ORTHO05D007980 9.1e-53 210.3 130 72.3
Lalb_Chr25g0283271 Lupinus albus HOM05D006442 ORTHO05D007980 1.2e-52 209.9 129 71.3
QL04p004786 Quercus lobata HOM05D006442 ORTHO05D007980 5.9e-52 207.6 172 58.1
Thecc.01G414800 Theobroma cacao HOM05D006442 ORTHO05D007980 1.3e-51 206.5 132 71.2
CDE07G0477 Ceratophyllum demersum HOM05D006442 ORTHO05D007980 1.7e-51 206.1 131 65.6
COL.COLO4_23906 Corchorus olitorius HOM05D006442 ORTHO05D007980 1.1e-50 203.4 134 70.1
AUR62009477 Chenopodium quinoa HOM05D006442 ORTHO05D007980 6.1e-49 197.6 132 65.2
AUR62023155 Chenopodium quinoa HOM05D006442 ORTHO05D007980 7.9e-49 197.2 131 66.4
unitig_22.g5766 Utricularia gibba HOM05D006442 ORTHO05D007980 3.0e-48 195.3 131 64.1
Atru.chr11.2672 Acer truncatum HOM05D006442 ORTHO05D007980 1.3e-46 189.9 108 77.8
AL8G18110 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 2.4e-45 185.7 130 63.8
BcaC06g31744 Brassica carinata HOM05D006442 ORTHO05D007980 5.3e-45 184.5 130 63.8
Ca_27853_v3 Cicer arietinum L. HOM05D006442 ORTHO05D007980 7.0e-45 184.1 223 45.3
AT5G42850 Arabidopsis thaliana HOM05D006442 ORTHO05D007980 1.2e-44 183.3 130 62.3
THA.LOC104823024 Tarenaya hassleriana HOM05D006442 ORTHO05D007980 1.5e-44 183.0 129 62.0
BcaC02g10802 Brassica carinata HOM05D006442 ORTHO05D007980 2.0e-44 182.6 130 62.3
C04p24990 Brassica napus HOM05D006442 ORTHO05D007980 2.0e-44 182.6 130 62.3
BolC4t23999H Brassica oleracea HOM05D006442 ORTHO05D007980 2.0e-44 182.6 130 62.3
A06p48230 Brassica napus HOM05D006442 ORTHO05D007980 2.6e-44 182.2 130 61.5
BraA06t27691Z Brassica rapa HOM05D006442 ORTHO05D007980 2.6e-44 182.2 130 61.5
Thhalv10003289m.g Eutrema salsugineum HOM05D006442 ORTHO05D007980 1.0e-43 180.3 130 62.3
Sp2g07550 Schrenkiella parvula HOM05D006442 ORTHO05D007980 1.3e-43 179.9 133 60.9
CARHR181310 Cardamine hirsuta HOM05D006442 ORTHO05D007980 1.1e-42 176.8 130 60.8
Carub.0008s0607 Capsella rubella HOM05D006442 ORTHO05D007980 1.4e-42 176.4 130 60.0
Glyma.08G152300 Glycine max HOM05D006442 ORTHO05D007980 1.4e-42 176.4 129 63.6
ATR0605G011 Amborella trichopoda HOM05D006442 ORTHO05D007980 1.6e-41 172.9 130 59.2
vmacro13638 Vaccinium macrocarpon HOM05D006442 ORTHO05D007980 2.1e-41 172.6 152 54.6
SEGI_10267 Sequoiadendron giganteum HOM05D006442 ORTHO05D007980 1.4e-40 169.9 129 58.1
Aa31LG8G5740 Aethionema arabicum HOM05D000097 ORTHO05D000041 3.9e-40 168.3 132 58.3
CAN.G37.7 Capsicum annuum HOM05D006442 ORTHO05D007980 5.2e-40 167.9 102 72.5
HPP92_018950 Vanilla planifolia HOM05D006442 ORTHO05D007980 9.7e-39 163.7 130 60.0
Os06g0320000 Oryza sativa ssp. japonica HOM05D006442 ORTHO05D007980 9.1e-37 157.1 138 53.6
Zm00001eb381670 Zea mays HOM05D006442 ORTHO05D007980 7.7e-36 154.1 133 55.6
Nitab4.5_0004606g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 1.7e-35 152.9 80 87.5
MBI01_g15755_MAGBIO Magnolia biondii HOM05D006442 ORTHO05D007980 1.1e-34 150.2 81 79.0
Mapoly0028s0130 Marchantia polymorpha HOM05D006442 ORTHO05D007980 1.1e-34 150.2 130 53.1
AagrBONN_evm.TU.Sc2ySwM_117.1593 Anthoceros agrestis HOM05D006442 ORTHO05D007980 1.9e-34 149.4 129 54.3
SMO244G0064 Selaginella moellendorffii HOM05D006442 ORTHO05D007980 4.2e-34 148.3 130 53.1
Pp3c1_3150 Physcomitrium patens HOM05D006442 ORTHO05D007980 1.2e-33 146.7 132 51.5
CsaV3_3G032370 Cucumis sativus L. HOM05D006442 ORTHO05D007980 4.7e-33 144.8 81 80.2
ClCG10G012580 Citrullus lanatus HOM05D002156 ORTHO05D002328 4.7e-25 118.2 74 71.6
MD02G1317000 Malus domestica HOM05D006442 ORTHO05D007980 1.2e-23 113.6 63 76.2
CBR_g40140 Chara braunii HOM05D006442 ORTHO05D007980 7.5e-23 110.9 116 50.9
MD01G1062200 Malus domestica HOM05D006442 ORTHO05D007980 3.7e-22 108.6 72 73.6
CAN.G290.22 Capsicum annuum HOM05D006442 ORTHO05D007980 2.4e-21 105.9 54 81.5
Aa31LG8G5750 Aethionema arabicum HOM05D006442 ORTHO05D007980 5.0e-19 98.2 124 41.1
CsaV3_3G032380 Cucumis sativus L. HOM05D002156 ORTHO05D002328 1.8e-13 79.7 48 70.8
MELO3C023952.2 Cucumis melo HOM05D002156 ORTHO05D002328 4.1e-13 78.6 48 68.8
AL8G12830 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 6.6e-11 71.2 56 58.9
MD00G1052400 Malus domestica HOM05D006442 ORTHO05D007980 6.6e-11 71.2 43 74.4
AL5G40550 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 4.3e-10 68.6 50 62.0


User provided reference genes

Program Settings