Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 2.5e-138 495.4 240 100.0
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 1.2e-90 337.0 164 97.6
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 4.6e-87 325.1 164 94.5
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 2.3e-83 312.8 160 91.9
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 1.5e-82 310.1 158 92.4
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 3.4e-82 308.9 163 88.3
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 9.8e-82 307.4 162 90.1
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 9.8e-82 307.4 162 88.9
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 4.9e-81 305.1 162 87.7
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 1.1e-80 303.9 162 87.7
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.1e-80 303.9 162 87.7
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.1e-80 303.9 162 87.7
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.1e-80 303.9 162 87.7
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 1.4e-80 303.5 162 87.7
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 2.4e-80 302.8 176 81.8
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 3.2e-80 302.4 162 88.9
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 4.1e-80 302.0 203 72.4
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 5.4e-80 301.6 162 86.4
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 5.4e-80 301.6 162 87.7
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 9.2e-80 300.8 203 72.4
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 9.2e-80 300.8 162 87.0
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 9.2e-80 300.8 203 70.9
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 2.0e-79 299.7 161 87.6
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 2.7e-79 299.3 162 86.4
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 3.5e-79 298.9 161 87.0
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 4.6e-79 298.5 162 85.2
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 7.8e-79 297.7 162 87.7
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 1.3e-78 297.0 162 85.8
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 1.7e-78 296.6 160 86.9
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 3.0e-78 295.8 162 87.0
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 3.0e-78 295.8 162 87.0
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 3.9e-78 295.4 162 85.2
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 5.0e-78 295.0 162 84.6
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 6.6e-78 294.7 201 69.7
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 6.6e-78 294.7 162 85.2
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 8.6e-78 294.3 162 85.2
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.5e-77 293.5 162 84.6
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 1.9e-77 293.1 161 83.9
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 1.9e-77 293.1 159 85.5
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 2.5e-77 292.7 162 83.3
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 3.3e-77 292.4 162 83.3
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 3.3e-77 292.4 159 84.9
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 3.3e-77 292.4 160 86.2
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 3.3e-77 292.4 161 83.9
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 5.6e-77 291.6 159 85.5
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 7.3e-77 291.2 161 84.5
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 1.2e-76 290.4 200 70.0
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 1.2e-76 290.4 161 82.6
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 1.2e-76 290.4 161 83.9
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 1.2e-76 290.4 162 83.3
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 1.6e-76 290.0 162 84.0
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 1.6e-76 290.0 159 84.3
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 1.6e-76 290.0 160 85.0
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 2.1e-76 289.7 161 85.1
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 2.8e-76 289.3 161 85.1
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 2.8e-76 289.3 162 84.6
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 3.6e-76 288.9 205 69.8
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 8.1e-76 287.7 161 82.6
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.8e-75 286.6 161 82.0
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 1.8e-75 286.6 159 84.3
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.3e-75 286.2 161 81.4
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.3e-75 286.2 161 81.4
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 3.1e-75 285.8 162 83.3
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 3.1e-75 285.8 159 84.3
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 3.1e-75 285.8 201 68.7
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 3.1e-75 285.8 159 82.4
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 8.9e-75 284.3 162 84.0
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 8.9e-75 284.3 161 83.9
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 8.9e-75 284.3 159 81.8
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 8.9e-75 284.3 162 82.1
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 1.2e-74 283.9 161 81.4
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 1.5e-74 283.5 203 68.5
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 1.5e-74 283.5 161 83.2
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 1.5e-74 283.5 159 83.6
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 1.5e-74 283.5 201 67.2
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 2.0e-74 283.1 162 83.3
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 2.0e-74 283.1 163 82.8
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 2.0e-74 283.1 163 82.8
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 2.0e-74 283.1 162 83.3
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 2.0e-74 283.1 157 84.1
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 2.0e-74 283.1 161 82.6
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 2.0e-74 283.1 161 82.6
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 4.4e-74 282.0 162 82.7
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 4.4e-74 282.0 204 68.6
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 9.8e-74 280.8 204 68.1
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.7e-73 280.0 159 82.4
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 1.7e-73 280.0 160 84.4
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 2.9e-73 279.3 162 82.7
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 2.9e-73 279.3 192 72.4
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 3.7e-73 278.9 152 85.5
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 4.9e-73 278.5 163 81.0
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 4.9e-73 278.5 161 81.4
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 1.4e-72 276.9 170 80.0
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 1.9e-72 276.6 161 78.3
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 1.9e-72 276.6 200 68.5
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 2.4e-72 276.2 161 77.6
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 9.2e-72 274.2 163 80.4
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 9.2e-72 274.2 163 80.4
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 1.6e-71 273.5 206 68.0
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 4.6e-71 271.9 154 79.9
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 3.3e-69 265.8 160 77.5
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 5.6e-69 265.0 149 80.5
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 9.5e-69 264.2 254 55.9
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 6.2e-68 261.5 153 78.4
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 1.8e-67 260.0 159 74.8
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 1.8e-67 260.0 191 66.0
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 3.1e-67 259.2 162 73.5
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 5.2e-67 258.5 162 72.8
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 1.2e-66 257.3 159 73.6
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.5e-66 256.9 160 73.1
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 4.4e-66 255.4 161 70.8
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 1.1e-64 250.8 197 62.4
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 1.9e-64 250.0 178 65.7
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 4.1e-64 248.8 160 71.2
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 4.1e-64 248.8 214 58.9
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 9.2e-64 247.7 161 70.8
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 2.7e-63 246.1 192 62.0
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 1.9e-61 240.0 136 81.6
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 6.2e-60 235.0 157 67.5
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 5.2e-59 231.9 194 58.2
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 9.3e-56 221.1 172 68.0
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 8.7e-54 214.5 146 72.6
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 2.6e-50 203.0 148 61.5
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 5.6e-45 185.3 182 51.1
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.3e-41 174.1 153 53.6
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 1.6e-36 157.1 90 84.4
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 3.7e-36 156.0 92 81.5
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 6.2e-36 155.2 107 72.9
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 4.9e-33 145.6 72 90.3
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 3.5e-31 139.4 109 62.4
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 8.7e-30 134.8 75 80.0
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 2.5e-29 133.3 70 84.3
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 3.1e-27 126.3 105 58.1
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 1.2e-18 97.8 88 51.1
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 1.5e-18 97.4 77 58.4
VMungo1127G1344 Vigna mungo HOM05D000839 ORTHO05D000664 6.5e-17 92.0 48 89.6
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 1.7e-12 77.4 47 70.2
TPR.G1074 Trifolium pratense HOM05D005285 ORTHO05D411165 1.5e-10 70.9 74 50.0
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 2.1e-07 60.5 50 58.0


User provided reference genes

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