Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g037890.3 Solanum lycopersicum HOM05D006344 ORTHO05D007744 3.1e-104 381.7 183 100.0
Sopen10g011810 Solanum pennellii HOM05D006344 ORTHO05D007744 1.7e-102 375.9 183 98.9
PGSC0003DMG400003447 Solanum tuberosum HOM05D006344 ORTHO05D007744 7.5e-90 334.0 163 97.5
Peaxi162Scf00103g00911 Petunia axillaris HOM05D006344 ORTHO05D007744 2.8e-89 332.0 181 86.2
Dinv44052 Davidia involucrata HOM05D006344 ORTHO05D007744 4.5e-87 324.7 183 83.6
MSTRG.20684 Avicennia marina HOM05D006344 ORTHO05D007744 2.9e-86 322.0 183 82.0
Oeu011251.1 Olea europaea HOM05D006344 ORTHO05D007744 3.8e-86 321.6 184 81.5
Migut.B01523 Erythranthe guttata HOM05D006344 ORTHO05D007744 1.6e-84 316.2 184 81.0
CSS0047635 Camellia sinensis var. sinensis HOM05D006344 ORTHO05D007744 2.3e-83 312.4 183 80.9
SalBow8G3479 Salvia bowleyana HOM05D006344 ORTHO05D007744 2.3e-83 312.4 183 79.2
SGA_v2.0_scaffold52G19234 Striga asiatica HOM05D006344 ORTHO05D007744 3.0e-83 312.0 183 79.8
CSS0005629 Camellia sinensis var. sinensis HOM05D006344 ORTHO05D007744 4.0e-83 311.6 183 80.9
Cc02_g25170 Coffea canephora HOM05D006344 ORTHO05D007744 6.8e-83 310.8 183 78.1
Cfa011061 Carpinus fangiana HOM05D006344 ORTHO05D007744 2.0e-82 309.3 181 77.9
GSVIVG01018294001 Vitis vinifera HOM05D006344 ORTHO05D007744 2.0e-82 309.3 183 78.7
QL04p029920 Quercus lobata HOM05D006344 ORTHO05D007744 2.6e-82 308.9 182 76.4
TAR375G1150 Trochodendron aralioides HOM05D006344 ORTHO05D007744 3.4e-82 308.5 183 77.6
unitig_0.g1343 Utricularia gibba HOM05D006344 ORTHO05D007744 4.4e-82 308.1 183 78.1
Haze_02860 Corylus avellana HOM05D006344 ORTHO05D007744 2.2e-81 305.8 182 77.5
Manes.05G055800 Manihot esculenta HOM05D006344 ORTHO05D007744 2.2e-81 305.8 179 78.2
ECA234G3853 Erigeron canadensis HOM05D006344 ORTHO05D007744 8.3e-81 303.9 180 77.8
Aqoxy3G02683 Aquilegia oxysepala HOM05D006344 ORTHO05D007744 1.8e-80 302.8 183 78.1
CANSAT25G2006 Cannabis sativa HOM05D006344 ORTHO05D007744 1.8e-80 302.8 183 75.4
vmacro13505 Vaccinium macrocarpon HOM05D006344 ORTHO05D007744 1.8e-80 302.8 183 78.1
VMungo0331G0733 Vigna mungo HOM05D006344 ORTHO05D007744 1.8e-80 302.8 182 75.8
EL10Ac1g00751 Beta vulgaris HOM05D006344 ORTHO05D007744 2.4e-80 302.4 179 75.4
Nn1g00813 Nelumbo nucifera HOM05D006344 ORTHO05D007744 2.4e-80 302.4 183 77.6
Nitab4.5_0000228g0070 Nicotiana tabacum HOM05D006344 ORTHO05D007744 2.4e-80 302.4 183 79.8
Phvul.010G046700 Phaseolus vulgaris HOM05D006344 ORTHO05D007744 2.4e-80 302.4 183 77.0
Glyma.12G152700 Glycine max HOM05D006344 ORTHO05D007744 3.1e-80 302.0 182 78.0
Sc26g0001660 Simmondsia chinensis HOM05D006344 ORTHO05D007744 3.1e-80 302.0 179 77.1
Potri.002G138600 Populus trichocarpa HOM05D006344 ORTHO05D007744 5.4e-80 301.2 183 76.0
Sabra02G0107400 Salix brachista HOM05D006344 ORTHO05D007744 1.6e-79 299.7 183 76.0
Lj3g0017960 Lotus japonicus HOM05D006344 ORTHO05D007744 2.0e-79 299.3 183 76.5
MD07G1109900 Malus domestica HOM05D006344 ORTHO05D007744 2.7e-79 298.9 184 77.2
HanXRQChr17g0562521 Helianthus annuus HOM05D006344 ORTHO05D007744 3.5e-79 298.5 180 76.7
Thecc.01G396400 Theobroma cacao HOM05D006344 ORTHO05D007744 5.9e-79 297.7 183 76.0
TWI23G1150 Tripterygium wilfordii HOM05D006344 ORTHO05D007744 5.9e-79 297.7 183 74.9
CiPaw.14G019800 Carya illinoinensis HOM05D006344 ORTHO05D007744 7.8e-79 297.4 181 76.2
Eucgr.D01222 Eucalyptus grandis HOM05D006344 ORTHO05D007744 1.0e-78 297.0 179 76.0
RcHm_v2.0_Chr1g0348081 Rosa chinensis HOM05D006344 ORTHO05D007744 1.7e-78 296.2 184 76.6
FAN10G1159 Fragaria x ananassa HOM05D006344 ORTHO05D007744 2.9e-78 295.4 184 76.1
Ciclev10019814m.g Citrus clementina HOM05D006344 ORTHO05D007744 5.0e-78 294.7 179 74.9
arahy.Tifrunner.gnm1.ann1.7K9T15 Arachis hypogaea HOM05D006344 ORTHO05D007744 8.6e-78 293.9 180 76.1
Lj9C555G1 Lonicera japonica HOM05D006344 ORTHO05D007744 8.6e-78 293.9 180 76.1
Prupe.2G133500 Prunus persica HOM05D006344 ORTHO05D007744 8.6e-78 293.9 186 74.7
arahy.Tifrunner.gnm1.ann1.6KIV37 Arachis hypogaea HOM05D006344 ORTHO05D007744 1.1e-77 293.5 180 76.1
FAN03G0097 Fragaria x ananassa HOM05D006344 ORTHO05D007744 1.1e-77 293.5 185 76.2
Hund17097 Selenicereus undatus HOM05D006344 ORTHO05D007744 1.1e-77 293.5 182 75.8
ClCG05G000130 Citrullus lanatus HOM05D006344 ORTHO05D007744 1.5e-77 293.1 183 76.0
FAN10G0415 Fragaria x ananassa HOM05D006344 ORTHO05D007744 1.5e-77 293.1 184 75.5
Lsat_1_v5_gn_4_39300 Lactuca sativa HOM05D006344 ORTHO05D007744 1.9e-77 292.7 189 74.1
AUR62013752 Chenopodium quinoa HOM05D006344 ORTHO05D007744 2.5e-77 292.4 180 73.3
Ca_14805_v3 Cicer arietinum L. HOM05D006344 ORTHO05D007744 3.3e-77 292.0 178 75.8
FvH4_7g10380 Fragaria vesca HOM05D006344 ORTHO05D007744 3.3e-77 292.0 184 75.5
FAN06G2435 Fragaria x ananassa HOM05D006344 ORTHO05D007744 3.3e-77 292.0 184 75.5
FAN06G3766 Fragaria x ananassa HOM05D006344 ORTHO05D007744 3.3e-77 292.0 184 75.5
COL.COLO4_12394 Corchorus olitorius HOM05D006344 ORTHO05D007744 7.3e-77 290.8 183 72.1
CsaV3_3G007240 Cucumis sativus L. HOM05D006344 ORTHO05D007744 2.1e-76 289.3 183 73.8
MELO3C005945.2 Cucumis melo HOM05D006344 ORTHO05D007744 2.8e-76 288.9 183 74.3
THA.LOC104802498 Tarenaya hassleriana HOM05D006344 ORTHO05D007744 4.7e-76 288.1 185 74.1
AUR62023399 Chenopodium quinoa HOM05D006344 ORTHO05D007744 8.0e-76 287.3 180 71.7
Duzib138G0679 Durio zibethinus HOM05D006344 ORTHO05D007744 2.3e-75 285.8 176 76.7
Medtr8g007155 Medicago truncatula HOM05D006344 ORTHO05D007744 2.3e-75 285.8 182 73.6
PSO782G2130 Papaver somniferum HOM05D006344 ORTHO05D007744 4.0e-75 285.0 179 73.2
FAN01G1631 Fragaria x ananassa HOM05D006344 ORTHO05D007744 5.2e-75 284.6 184 73.9
Glyma.06G240000 Glycine max HOM05D006344 ORTHO05D007744 1.5e-74 283.1 182 73.6
Lalb_Chr12g0210531 Lupinus albus HOM05D006344 ORTHO05D007744 1.5e-74 283.1 181 71.8
Rhsim07G0037100 Rhododendron simsii HOM05D006344 ORTHO05D007744 2.0e-74 282.7 165 79.4
Gorai.008G109500 Gossypium raimondii HOM05D006344 ORTHO05D007744 9.8e-74 280.4 181 73.5
Gohir.A12G097600 Gossypium hirsutum HOM05D006344 ORTHO05D007744 2.9e-73 278.9 181 73.5
A05p04940 Brassica napus HOM05D006344 ORTHO05D007744 3.7e-73 278.5 182 70.3
Thhalv10001417m.g Eutrema salsugineum HOM05D006344 ORTHO05D007744 6.4e-73 277.7 189 70.4
PGR004G1920 Punica granatum HOM05D006344 ORTHO05D007744 6.4e-73 277.7 185 70.3
Sp4g26830 Schrenkiella parvula HOM05D006344 ORTHO05D007744 6.4e-73 277.7 189 70.4
Gohir.D12G100600 Gossypium hirsutum HOM05D006344 ORTHO05D007744 8.3e-73 277.3 181 72.9
BraA05t19467Z Brassica rapa HOM05D006344 ORTHO05D007744 1.1e-72 276.9 182 69.8
TPR.G32142 Trifolium pratense HOM05D006344 ORTHO05D007744 1.4e-72 276.6 182 72.5
AL4G43840 Arabidopsis lyrata HOM05D006344 ORTHO05D007744 2.4e-72 275.8 183 72.7
DCAR_025059 Daucus carota HOM05D006344 ORTHO05D007744 2.4e-72 275.8 198 67.2
BcaB02g08857 Brassica carinata HOM05D006344 ORTHO05D007744 3.2e-72 275.4 191 69.1
Duzib133G0621 Durio zibethinus HOM05D006344 ORTHO05D007744 3.2e-72 275.4 182 72.5
Psat4g223640 Pisum sativum HOM05D006344 ORTHO05D007744 3.2e-72 275.4 182 72.5
Carub.0004s2733 Capsella rubella HOM05D006344 ORTHO05D007744 5.4e-72 274.6 183 72.1
BcaC02g12272 Brassica carinata HOM05D006344 ORTHO05D007744 7.0e-72 274.2 182 69.2
BolC4t22205H Brassica oleracea HOM05D006344 ORTHO05D007744 7.0e-72 274.2 182 69.2
CARHR139980 Cardamine hirsuta HOM05D006344 ORTHO05D007744 2.0e-71 272.7 180 72.2
C04p05760 Brassica napus HOM05D006344 ORTHO05D007744 4.6e-71 271.6 182 68.7
ATR0665G564 Amborella trichopoda HOM05D006344 ORTHO05D007744 7.8e-71 270.8 183 69.9
Aa31LG1G26310 Aethionema arabicum HOM05D006344 ORTHO05D007744 1.3e-70 270.0 184 69.6
AT2G44760 Arabidopsis thaliana HOM05D006344 ORTHO05D007744 1.3e-70 270.0 183 70.5
Zm00001eb427880 Zea mays HOM05D006344 ORTHO05D007744 1.1e-67 260.4 181 66.3
Os04g0545200 Oryza sativa ssp. japonica HOM05D006344 ORTHO05D007744 3.1e-67 258.8 179 65.9
Actinidia18353 Actinidia chinensis HOM05D006344 ORTHO05D007744 8.9e-67 257.3 155 77.4
CDE06G1994 Ceratophyllum demersum HOM05D006344 ORTHO05D007744 3.7e-65 251.9 163 71.8
Cpa.g.sc22.25 Carica papaya HOM05D006344 ORTHO05D007744 6.4e-65 251.1 169 71.6
Atru.chr5.116 Acer truncatum HOM05D006344 ORTHO05D007744 1.0e-62 243.8 181 66.9
HPP92_012970 Vanilla planifolia HOM05D006344 ORTHO05D007744 5.0e-62 241.5 181 64.6
Sed0012570 Sechium edule HOM05D006344 ORTHO05D007744 4.7e-60 235.0 175 66.3
Nitab4.5_0009461g0020 Nicotiana tabacum HOM05D006344 ORTHO05D007744 1.2e-58 230.3 177 66.1
COL.COLO4_10415 Corchorus olitorius HOM05D006344 ORTHO05D007744 7.5e-58 227.6 183 59.6
SEGI_37248 Sequoiadendron giganteum HOM05D006344 ORTHO05D007744 2.4e-51 206.1 179 53.1
Pp3c5_3810 Physcomitrium patens HOM05D006344 ORTHO05D007744 2.5e-37 159.5 180 46.1
AagrBONN_evm.TU.Sc2ySwM_117.1538 Anthoceros agrestis HOM05D006344 ORTHO05D007744 4.6e-31 138.7 182 38.5
Mapoly0089s0048 Marchantia polymorpha HOM05D006344 ORTHO05D007744 1.8e-30 136.7 180 42.2
SMO340G0133 Selaginella moellendorffii HOM05D002542 ORTHO05D007744 1.5e-18 97.1 157 33.8
CBR_g48168 Chara braunii HOM05D006344 ORTHO05D007744 6.5e-17 91.7 156 34.0
CDE06G0422 Ceratophyllum demersum HOM05D006344 ORTHO05D007744 3.2e-16 89.4 58 65.5
Peaxi162Scf00562g00069 Petunia axillaris HOM05D006344 ORTHO05D007744 8.2e-12 74.7 51 72.5
Actinidia26517 Actinidia chinensis HOM05D006344 ORTHO05D007744 3.2e-08 62.8 35 80.0
Cre16.g684900 Chlamydomonas reinhardtii HOM05D006344 ORTHO05D007744 5.5e-08 62.0 233 23.6
HanXRQChr01g0015371 Helianthus annuus HOM05D000263 ORTHO05D000213 9.4e-08 61.2 35 77.1
Peaxi162Scf00562g00612 Petunia axillaris HOM05D006344 ORTHO05D007744 5.1e-06 55.5 36 69.4


User provided reference genes

Program Settings