Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g019120.1 Solanum lycopersicum HOM05D003568 ORTHO05D004104 2.6e-68 261.9 134 100.0
Sopen10g009040 Solanum pennellii HOM05D003568 ORTHO05D004104 1.4e-64 249.6 130 97.7
Sopen11g021810 Solanum pennellii HOM05D003568 ORTHO05D004104 6.7e-64 247.3 130 96.9
Sopen10g009080 Solanum pennellii HOM05D003568 ORTHO05D004104 2.6e-63 245.4 130 96.2
Solyc11g050710.2 Solanum lycopersicum HOM05D003568 ORTHO05D004104 5.7e-63 244.2 133 93.2
Sopen10g009070 Solanum pennellii HOM05D003568 ORTHO05D004104 2.2e-62 242.3 130 95.4
Sopen00g003310 Solanum pennellii HOM05D003568 ORTHO05D004104 8.2e-62 240.4 130 94.6
CAN.G45.13 Capsicum annuum HOM05D003568 ORTHO05D004104 9.1e-53 210.3 139 82.7
Nitab4.5_0010629g0020 Nicotiana tabacum HOM05D003568 ORTHO05D004104 5.0e-43 177.9 148 68.2
Peaxi162Scf00154g00427 Petunia axillaris HOM05D003568 ORTHO05D004104 8.6e-43 177.2 145 66.9
Nitab4.5_0004323g0080 Nicotiana tabacum HOM05D003568 ORTHO05D004104 1.9e-42 176.0 148 67.6
Solyc10g019140.1 Solanum lycopersicum HOM05D003568 ORTHO05D004104 8.3e-38 160.6 91 87.9
Migut.N01148 Erythranthe guttata HOM05D003568 ORTHO05D004104 1.6e-36 156.4 142 56.3
Prupe.2G177200 Prunus persica HOM05D003568 ORTHO05D004104 5.9e-36 154.5 146 57.5
Oeu036591.1 Olea europaea HOM05D003568 ORTHO05D004104 1.7e-35 152.9 147 55.1
THA.LOC104811828 Tarenaya hassleriana HOM05D003568 ORTHO05D004104 2.3e-35 152.5 145 55.2
Cc08_g01740 Coffea canephora HOM05D003568 ORTHO05D004104 2.9e-35 152.1 146 58.9
Lj9A588G62 Lonicera japonica HOM05D003568 ORTHO05D004104 6.6e-35 151.0 143 58.7
Oeu015218.3 Olea europaea HOM05D003568 ORTHO05D004104 8.6e-35 150.6 127 59.1
Aqoxy2G00934 Aquilegia oxysepala HOM05D003568 ORTHO05D004104 1.5e-34 149.8 139 56.1
Cpa.g.sc184.32 Carica papaya HOM05D003568 ORTHO05D004104 3.3e-34 148.7 142 56.3
C09p64520 Brassica napus HOM05D003568 ORTHO05D004104 4.3e-34 148.3 124 57.3
BolC9t59286H Brassica oleracea HOM05D003568 ORTHO05D004104 4.3e-34 148.3 124 57.3
Peaxi162Scf00073g02118 Petunia axillaris HOM05D003568 ORTHO05D004104 4.3e-34 148.3 130 60.8
PSO478G3452 Papaver somniferum HOM05D003568 ORTHO05D004104 5.6e-34 147.9 143 57.3
MSTRG.27756 Avicennia marina HOM05D003568 ORTHO05D004104 7.3e-34 147.5 145 54.5
RcHm_v2.0_Chr1g0357661 Rosa chinensis HOM05D003568 ORTHO05D004104 9.5e-34 147.1 146 55.5
CSS0027239 Camellia sinensis var. sinensis HOM05D003568 ORTHO05D004104 1.2e-33 146.7 148 56.1
Lsat_1_v5_gn_7_3960 Lactuca sativa HOM05D003568 ORTHO05D004104 1.2e-33 146.7 138 60.1
TAR375G0541 Trochodendron aralioides HOM05D003568 ORTHO05D004104 1.2e-33 146.7 146 54.8
Dinv27398 Davidia involucrata HOM05D003568 ORTHO05D004104 2.1e-33 146.0 148 56.8
FAN03G0275 Fragaria x ananassa HOM05D003568 ORTHO05D004104 2.8e-33 145.6 146 54.8
SGA_v2.0_scaffold67G22717 Striga asiatica HOM05D003568 ORTHO05D004104 2.8e-33 145.6 146 54.8
FvH4_7g15330 Fragaria vesca HOM05D003568 ORTHO05D004104 3.6e-33 145.2 146 54.8
BolC3t13154H Brassica oleracea HOM05D003568 ORTHO05D004104 4.7e-33 144.8 131 53.4
PSO266G0033 Papaver somniferum HOM05D003568 ORTHO05D004104 4.7e-33 144.8 143 56.6
CSS0044044 Camellia sinensis var. sinensis HOM05D003568 ORTHO05D004104 6.2e-33 144.4 146 55.5
Potri.002G164100 Populus trichocarpa HOM05D003568 ORTHO05D004104 6.2e-33 144.4 145 55.2
C03p06540 Brassica napus HOM05D003568 ORTHO05D004104 8.0e-33 144.1 131 53.4
CSS0021365 Camellia sinensis var. sinensis HOM05D003568 ORTHO05D004104 8.0e-33 144.1 146 55.5
ClCG05G001260 Citrullus lanatus HOM05D003568 ORTHO05D004104 8.0e-33 144.1 145 54.5
FAN06G0334 Fragaria x ananassa HOM05D003568 ORTHO05D004104 8.0e-33 144.1 146 54.1
FAN06G4614 Fragaria x ananassa HOM05D003568 ORTHO05D004104 8.0e-33 144.1 146 54.1
Solyc03g095410.3 Solanum lycopersicum HOM05D003568 ORTHO05D004104 8.0e-33 144.1 148 56.1
MD01G1071200 Malus domestica HOM05D003568 ORTHO05D004104 1.0e-32 143.7 144 54.2
Potri.014G090100 Populus trichocarpa HOM05D003568 ORTHO05D004104 1.0e-32 143.7 146 55.5
Thhalv10012686m.g Eutrema salsugineum HOM05D003568 ORTHO05D004104 1.4e-32 143.3 130 55.4
Nitab4.5_0000171g0380 Nicotiana tabacum HOM05D003568 ORTHO05D004104 1.4e-32 143.3 145 54.5
TWI59G1008 Tripterygium wilfordii HOM05D003568 ORTHO05D004104 1.4e-32 143.3 143 55.2
GSVIVG01026964001 Vitis vinifera HOM05D003568 ORTHO05D004104 1.4e-32 143.3 145 54.5
A03p05590 Brassica napus HOM05D003568 ORTHO05D004104 1.8e-32 142.9 131 53.4
BraA03t09896Z Brassica rapa HOM05D003568 ORTHO05D004104 1.8e-32 142.9 131 53.4
Eucgr.E00099 Eucalyptus grandis HOM05D003568 ORTHO05D004104 1.8e-32 142.9 146 54.8
Manes.01G252500 Manihot esculenta HOM05D003568 ORTHO05D004104 1.8e-32 142.9 125 60.8
Sed0000810 Sechium edule HOM05D003568 ORTHO05D004104 1.8e-32 142.9 145 53.1
PGSC0003DMG400005252 Solanum tuberosum HOM05D003568 ORTHO05D004104 1.8e-32 142.9 148 55.4
Sabra02G0147000 Salix brachista HOM05D003568 ORTHO05D004104 2.3e-32 142.5 144 56.9
Aa31LG3G14860 Aethionema arabicum HOM05D003568 ORTHO05D004104 3.1e-32 142.1 127 55.1
CAN.G165.6 Capsicum annuum HOM05D003568 ORTHO05D004104 3.1e-32 142.1 148 54.1
Sabra14G0065400 Salix brachista HOM05D003568 ORTHO05D004104 3.1e-32 142.1 146 53.4
MELO3C006082.2 Cucumis melo HOM05D003568 ORTHO05D004104 4.0e-32 141.7 144 53.5
HanXRQChr04g0120781 Helianthus annuus HOM05D003568 ORTHO05D004104 4.0e-32 141.7 145 53.8
CsaV3_3G008620 Cucumis sativus L. HOM05D003568 ORTHO05D004104 5.2e-32 141.4 144 54.2
HanXRQChr14g0445661 Helianthus annuus HOM05D003568 ORTHO05D004104 6.8e-32 141.0 142 54.9
Thecc.03G000600 Theobroma cacao HOM05D003568 ORTHO05D004104 6.8e-32 141.0 136 54.4
Duzib205G0971 Durio zibethinus HOM05D003568 ORTHO05D004104 8.9e-32 140.6 136 54.4
ECA236G4463 Erigeron canadensis HOM05D003568 ORTHO05D004104 8.9e-32 140.6 139 57.6
FAN01G2394 Fragaria x ananassa HOM05D003568 ORTHO05D004104 8.9e-32 140.6 146 52.7
MD07G1131500 Malus domestica HOM05D003568 ORTHO05D004104 8.9e-32 140.6 124 58.9
Ciclev10018853m.g Citrus clementina HOM05D003568 ORTHO05D004104 1.2e-31 140.2 146 53.4
Nn1g01682 Nelumbo nucifera HOM05D003568 ORTHO05D004104 1.2e-31 140.2 146 53.4
Sopen03g025390 Solanum pennellii HOM05D003568 ORTHO05D004104 1.2e-31 140.2 148 54.7
Thecc.06G000300 Theobroma cacao HOM05D003568 ORTHO05D004104 1.2e-31 140.2 136 54.4
FAN10G2437 Fragaria x ananassa HOM05D003568 ORTHO05D004104 1.5e-31 139.8 146 54.1
Nn6g35074 Nelumbo nucifera HOM05D003568 ORTHO05D004104 1.5e-31 139.8 146 52.7
Sp6g31270 Schrenkiella parvula HOM05D003568 ORTHO05D004104 1.5e-31 139.8 127 55.9
vmacro13231 Vaccinium macrocarpon HOM05D003568 ORTHO05D004104 1.5e-31 139.8 147 53.7
Carub.0006s1087 Capsella rubella HOM05D003568 ORTHO05D004104 2.0e-31 139.4 126 57.1
Manes.05G029701 Manihot esculenta HOM05D003568 ORTHO05D004104 2.0e-31 139.4 139 55.4
AL6G23170 Arabidopsis lyrata HOM05D003568 ORTHO05D004104 2.6e-31 139.0 126 56.3
AT5G12370 Arabidopsis thaliana HOM05D003568 ORTHO05D004104 2.6e-31 139.0 126 56.3
CARHR200740 Cardamine hirsuta HOM05D003568 ORTHO05D004104 2.6e-31 139.0 127 55.9
COL.COLO4_22311 Corchorus olitorius HOM05D003568 ORTHO05D004104 2.6e-31 139.0 136 53.7
Nitab4.5_0006926g0010 Nicotiana tabacum HOM05D003568 ORTHO05D004104 3.4e-31 138.7 142 54.9
SalBow6G4826 Salvia bowleyana HOM05D003568 ORTHO05D004104 3.4e-31 138.7 140 54.3
CANSAT56G2290 Cannabis sativa HOM05D003568 ORTHO05D004104 4.4e-31 138.3 146 50.0
A10p25450 Brassica napus HOM05D003568 ORTHO05D004104 5.8e-31 137.9 126 55.6
BraA10t44609Z Brassica rapa HOM05D003568 ORTHO05D004104 5.8e-31 137.9 126 55.6
SalBow6G0922 Salvia bowleyana HOM05D003568 ORTHO05D004104 9.8e-31 137.1 140 53.6
Dinv09574 Davidia involucrata HOM05D003568 ORTHO05D004104 1.7e-30 136.3 145 53.1
Sc03g0008850 Simmondsia chinensis HOM05D003568 ORTHO05D004104 2.2e-30 136.0 123 56.9
Gohir.D09G046200 Gossypium hirsutum HOM05D003568 ORTHO05D004104 2.9e-30 135.6 136 54.4
Gorai.006G064200 Gossypium raimondii HOM05D003568 ORTHO05D004104 2.9e-30 135.6 136 54.4
QL04p055468 Quercus lobata HOM05D003568 ORTHO05D004104 2.9e-30 135.6 144 52.1
Rhsim07G0010700 Rhododendron simsii HOM05D003568 ORTHO05D004104 3.7e-30 135.2 127 55.1
Lj3g0009129 Lotus japonicus HOM05D003568 ORTHO05D004104 4.9e-30 134.8 145 52.4
PGR042G3260 Punica granatum HOM05D003568 ORTHO05D004104 4.9e-30 134.8 143 52.4
Haze_15562 Corylus avellana HOM05D003568 ORTHO05D004104 6.4e-30 134.4 145 51.7
Sed0017270 Sechium edule HOM05D003568 ORTHO05D004104 6.4e-30 134.4 123 56.9
Atru.chr5.561 Acer truncatum HOM05D003568 ORTHO05D004104 8.3e-30 134.0 145 51.7
Atru.chr5.579 Acer truncatum HOM05D003568 ORTHO05D004104 8.3e-30 134.0 145 51.7
BcaB01g05405 Brassica carinata HOM05D003568 ORTHO05D004104 1.1e-29 133.7 123 53.7
CiPaw.02G034600 Carya illinoinensis HOM05D003568 ORTHO05D004104 1.1e-29 133.7 146 51.4
Gohir.A09G045200 Gossypium hirsutum HOM05D003568 ORTHO05D004104 1.1e-29 133.7 136 54.4
Hund23292 Selenicereus undatus HOM05D003568 ORTHO05D004104 1.1e-29 133.7 134 53.0
Lj7A507T47 Lonicera japonica HOM05D003568 ORTHO05D004104 1.9e-29 132.9 147 51.0
Gohir.D12G276500 Gossypium hirsutum HOM05D003568 ORTHO05D004104 2.4e-29 132.5 138 53.6
Gorai.008G297000 Gossypium raimondii HOM05D003568 ORTHO05D004104 2.4e-29 132.5 138 53.6
DCAR_006948 Daucus carota HOM05D003568 ORTHO05D004104 4.1e-29 131.7 145 49.7
Gohir.A12G275800 Gossypium hirsutum HOM05D003568 ORTHO05D004104 4.1e-29 131.7 138 52.9
HPP92_003241 Vanilla planifolia HOM05D003568 ORTHO05D004104 9.2e-29 130.6 126 51.6
Glyma.07G046100 Glycine max HOM05D003568 ORTHO05D004104 2.0e-28 129.4 146 50.0
AUR62036376 Chenopodium quinoa HOM05D003568 ORTHO05D004104 4.6e-28 128.3 127 55.1
Haze_19031 Corylus avellana HOM05D003568 ORTHO05D004104 6.0e-28 127.9 145 50.3
unitig_21.g20340 Utricularia gibba HOM05D003568 ORTHO05D004104 6.0e-28 127.9 125 55.2
Glyma.16G014200 Glycine max HOM05D003568 ORTHO05D004104 7.8e-28 127.5 149 49.7
Ca_23448_v3 Cicer arietinum L. HOM05D003568 ORTHO05D004104 8.6e-27 124.0 133 49.6
VMungo0331G1030 Vigna mungo HOM05D003568 ORTHO05D004104 8.6e-27 124.0 134 47.8
Duzib068G0821 Durio zibethinus HOM05D003568 ORTHO05D004104 1.5e-26 123.2 136 50.7
Phvul.010G123000 Phaseolus vulgaris HOM05D003568 ORTHO05D004104 1.5e-26 123.2 143 50.3
EL10Ac5g12970 Beta vulgaris HOM05D003568 ORTHO05D004104 2.5e-26 122.5 125 53.6
Hund02118 Selenicereus undatus HOM05D003568 ORTHO05D004104 1.2e-25 120.2 134 50.0
ATR0829G125 Amborella trichopoda HOM05D003568 ORTHO05D004104 2.8e-25 119.0 126 49.2
arahy.Tifrunner.gnm1.ann1.PRYL24 Arachis hypogaea HOM05D003568 ORTHO05D004104 2.3e-24 115.9 132 50.0
arahy.Tifrunner.gnm1.ann1.Z56S5U Arachis hypogaea HOM05D003568 ORTHO05D004104 2.3e-24 115.9 132 50.0
TPR.G21815 Trifolium pratense HOM05D003568 ORTHO05D004104 1.5e-23 113.2 133 46.6
Medtr8g023330 Medicago truncatula HOM05D003568 ORTHO05D004104 2.6e-23 112.5 133 45.9
Psat4g164920 Pisum sativum HOM05D003568 ORTHO05D004104 3.4e-23 112.1 126 49.2
Lalb_Chr17g0343201 Lupinus albus HOM05D003568 ORTHO05D004104 7.5e-23 110.9 128 51.6
SEGI_20614 Sequoiadendron giganteum HOM05D003568 ORTHO05D004104 9.8e-23 110.5 124 48.4
SEGI_32899 Sequoiadendron giganteum HOM05D003568 ORTHO05D004104 9.8e-23 110.5 124 48.4
HanXRQChr13g0415591 Helianthus annuus HOM05D003568 ORTHO05D004104 3.2e-21 105.5 135 44.4
Lalb_Chr18g0044861 Lupinus albus HOM05D003568 ORTHO05D004104 5.4e-21 104.8 133 42.9
MBI03_g44580_MAGBIO Magnolia biondii HOM05D003568 ORTHO05D004104 9.2e-21 104.0 95 56.8
MBI17_g30844_MAGBIO Magnolia biondii HOM05D003568 ORTHO05D004104 2.7e-20 102.4 95 56.8
MBI19_g38425_MAGBIO Magnolia biondii HOM05D003568 ORTHO05D004104 4.6e-20 101.7 118 51.7
HanXRQChr02g0038861 Helianthus annuus HOM05D003568 ORTHO05D004104 1.3e-19 100.1 135 44.4
Lsat_1_v5_gn_3_138540 Lactuca sativa HOM05D003568 ORTHO05D004104 3.9e-19 98.6 136 42.6
ECA238G2843 Erigeron canadensis HOM05D003568 ORTHO05D004104 3.3e-18 95.5 129 41.9
Os12g0238100 Oryza sativa ssp. japonica HOM05D003568 ORTHO05D004104 5.6e-18 94.7 120 46.7
AUR62030738 Chenopodium quinoa HOM05D003568 ORTHO05D004104 2.1e-17 92.8 127 44.9
Mapoly0070s0084 Marchantia polymorpha HOM05D003568 ORTHO05D004104 2.8e-17 92.4 122 44.3
AagrBONN_evm.TU.Sc2ySwM_117.807 Anthoceros agrestis HOM05D003568 ORTHO05D004104 3.6e-17 92.0 116 45.7
COL.COLO4_15385 Corchorus olitorius HOM05D003568 ORTHO05D004104 1.1e-16 90.5 97 51.5
ClCG05G001230 Citrullus lanatus HOM05D003568 ORTHO05D004104 1.4e-13 80.1 143 38.5
CDE07G1174 Ceratophyllum demersum HOM05D003568 ORTHO05D004104 2.4e-13 79.3 61 63.9
MBI14_g09475_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D004104 6.6e-11 71.2 53 64.2
SMO329G0014 Selaginella moellendorffii HOM05D003568 ORTHO05D004104 6.6e-11 71.2 122 36.9
Pp3c7_5960 Physcomitrium patens HOM05D003568 ORTHO05D004104 8.6e-11 70.9 119 41.2
MBI08_g05068_MAGBIO Magnolia biondii HOM05D003568 ORTHO05D004104 3.3e-10 68.9 53 62.3
Zm00001eb133590 Zea mays HOM05D003568 ORTHO05D004104 4.3e-10 68.6 120 39.2
CBR_g38471 Chara braunii HOM05D003568 ORTHO05D004104 3.1e-08 62.4 114 36.8
SEGI_24596 Sequoiadendron giganteum HOM05D003568 ORTHO05D004104 5.2e-08 61.6 58 51.7
Sed0024683 Sechium edule HOM05D003568 ORTHO05D004104 5.8e-07 58.2 85 42.4
TPR.G39543 Trifolium pratense HOM05D003568 ORTHO05D004104 6.4e-06 54.7 82 41.5


User provided reference genes

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