Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g019100.2 Solanum lycopersicum HOM05D003568 ORTHO05D004104 4.7e-35 150.6 74 100.0
Sopen10g009060 Solanum pennellii HOM05D003568 ORTHO05D004104 9.9e-33 142.9 73 94.5
Sopen10g009070 Solanum pennellii HOM05D003568 ORTHO05D004104 3.6e-27 124.4 76 85.5
Nitab4.5_0010629g0020 Nicotiana tabacum HOM05D003568 ORTHO05D004104 4.8e-27 124.0 63 95.2
Sopen11g021810 Solanum pennellii HOM05D003568 ORTHO05D004104 4.8e-27 124.0 62 96.8
Peaxi162Scf00154g00427 Petunia axillaris HOM05D003568 ORTHO05D004104 1.4e-26 122.5 62 93.5
Sopen00g003310 Solanum pennellii HOM05D003568 ORTHO05D004104 1.5e-25 119.0 60 95.0
Sopen10g009040 Solanum pennellii HOM05D003568 ORTHO05D004104 4.4e-25 117.5 60 95.0
Sopen10g009080 Solanum pennellii HOM05D003568 ORTHO05D004104 7.6e-25 116.7 69 82.6
CAN.G165.6 Capsicum annuum HOM05D003568 ORTHO05D004104 3.8e-24 114.4 62 88.7
Nitab4.5_0000171g0380 Nicotiana tabacum HOM05D003568 ORTHO05D004104 3.8e-24 114.4 62 88.7
Nitab4.5_0006926g0010 Nicotiana tabacum HOM05D003568 ORTHO05D004104 3.8e-24 114.4 62 88.7
Peaxi162Scf00073g02118 Petunia axillaris HOM05D003568 ORTHO05D004104 3.8e-24 114.4 62 88.7
Solyc03g095410.3 Solanum lycopersicum HOM05D003568 ORTHO05D004104 3.8e-24 114.4 62 88.7
Sopen03g025390 Solanum pennellii HOM05D003568 ORTHO05D004104 3.8e-24 114.4 62 88.7
PGSC0003DMG400005252 Solanum tuberosum HOM05D003568 ORTHO05D004104 3.8e-24 114.4 62 88.7
Sc03g0008850 Simmondsia chinensis HOM05D003568 ORTHO05D004104 4.9e-24 114.0 62 88.7
Oeu015217.1 Olea europaea HOM05D003568 ORTHO05D004104 6.4e-24 113.6 65 84.6
SGA_v2.0_scaffold67G22717 Striga asiatica HOM05D003568 ORTHO05D004104 1.4e-23 112.5 62 87.1
CSS0027239 Camellia sinensis var. sinensis HOM05D003568 ORTHO05D004104 1.9e-23 112.1 62 87.1
Duzib068G0821 Durio zibethinus HOM05D003568 ORTHO05D004104 1.9e-23 112.1 62 87.1
Duzib205G0971 Durio zibethinus HOM05D003568 ORTHO05D004104 1.9e-23 112.1 62 87.1
Gohir.A12G275800 Gossypium hirsutum HOM05D003568 ORTHO05D004104 1.9e-23 112.1 62 87.1
Gohir.D12G276500 Gossypium hirsutum HOM05D003568 ORTHO05D004104 1.9e-23 112.1 62 87.1
Gorai.008G297000 Gossypium raimondii HOM05D003568 ORTHO05D004104 1.9e-23 112.1 62 87.1
Medtr8g023330 Medicago truncatula HOM05D003568 ORTHO05D004104 1.9e-23 112.1 62 87.1
Thecc.03G000600 Theobroma cacao HOM05D003568 ORTHO05D004104 1.9e-23 112.1 62 87.1
Thecc.06G000300 Theobroma cacao HOM05D003568 ORTHO05D004104 1.9e-23 112.1 62 87.1
Aqoxy2G00934 Aquilegia oxysepala HOM05D003568 ORTHO05D004104 2.4e-23 111.7 62 87.1
CANSAT56G2290 Cannabis sativa HOM05D003568 ORTHO05D004104 2.4e-23 111.7 62 87.1
Cpa.g.sc184.32 Carica papaya HOM05D003568 ORTHO05D004104 2.4e-23 111.7 62 87.1
Ca_23448_v3 Cicer arietinum L. HOM05D003568 ORTHO05D004104 2.4e-23 111.7 62 87.1
ClCG05G001260 Citrullus lanatus HOM05D003568 ORTHO05D004104 2.4e-23 111.7 62 87.1
Ciclev10018853m.g Citrus clementina HOM05D003568 ORTHO05D004104 2.4e-23 111.7 62 87.1
COL.COLO4_15385 Corchorus olitorius HOM05D003568 ORTHO05D004104 2.4e-23 111.7 62 87.1
Eucgr.E00099 Eucalyptus grandis HOM05D003568 ORTHO05D004104 2.4e-23 111.7 62 85.5
FvH4_7g15330 Fragaria vesca HOM05D003568 ORTHO05D004104 2.4e-23 111.7 62 87.1
FAN01G2394 Fragaria x ananassa HOM05D003568 ORTHO05D004104 2.4e-23 111.7 62 87.1
FAN03G0275 Fragaria x ananassa HOM05D003568 ORTHO05D004104 2.4e-23 111.7 62 87.1
FAN06G0334 Fragaria x ananassa HOM05D003568 ORTHO05D004104 2.4e-23 111.7 62 87.1
FAN06G4614 Fragaria x ananassa HOM05D003568 ORTHO05D004104 2.4e-23 111.7 62 87.1
FAN10G2647 Fragaria x ananassa HOM05D003568 ORTHO05D004104 2.4e-23 111.7 62 87.1
Gohir.D09G046200 Gossypium hirsutum HOM05D003568 ORTHO05D004104 2.4e-23 111.7 62 87.1
Gorai.006G064200 Gossypium raimondii HOM05D003568 ORTHO05D004104 2.4e-23 111.7 62 87.1
Lj3g0009129 Lotus japonicus HOM05D003568 ORTHO05D004104 2.4e-23 111.7 62 87.1
Lalb_Chr18g0044861 Lupinus albus HOM05D003568 ORTHO05D004104 2.4e-23 111.7 62 85.5
MD01G1071200 Malus domestica HOM05D003568 ORTHO05D004104 2.4e-23 111.7 62 87.1
Manes.05G029701 Manihot esculenta HOM05D003568 ORTHO05D004104 2.4e-23 111.7 62 87.1
Psat4g164920 Pisum sativum HOM05D003568 ORTHO05D004104 2.4e-23 111.7 62 87.1
Potri.002G164100 Populus trichocarpa HOM05D003568 ORTHO05D004104 2.4e-23 111.7 62 87.1
Potri.014G090100 Populus trichocarpa HOM05D003568 ORTHO05D004104 2.4e-23 111.7 62 87.1
Prupe.2G177200 Prunus persica HOM05D003568 ORTHO05D004104 2.4e-23 111.7 62 87.1
QL04p055468 Quercus lobata HOM05D003568 ORTHO05D004104 2.4e-23 111.7 62 87.1
Rhsim07G0010700 Rhododendron simsii HOM05D003568 ORTHO05D004104 2.4e-23 111.7 62 87.1
RcHm_v2.0_Chr1g0357661 Rosa chinensis HOM05D003568 ORTHO05D004104 2.4e-23 111.7 62 87.1
Sabra02G0147000 Salix brachista HOM05D003568 ORTHO05D004104 2.4e-23 111.7 62 87.1
Sabra14G0065400 Salix brachista HOM05D003568 ORTHO05D004104 2.4e-23 111.7 62 87.1
TPR.G21815 Trifolium pratense HOM05D003568 ORTHO05D004104 2.4e-23 111.7 62 87.1
vmacro13231 Vaccinium macrocarpon HOM05D003568 ORTHO05D004104 2.4e-23 111.7 62 87.1
Cc08_g01740 Coffea canephora HOM05D003568 ORTHO05D004104 3.2e-23 111.3 62 87.1
PGR042G3260 Punica granatum HOM05D003568 ORTHO05D004104 3.2e-23 111.3 62 87.1
GSVIVG01026964001 Vitis vinifera HOM05D003568 ORTHO05D004104 3.2e-23 111.3 62 87.1
MSTRG.27756 Avicennia marina HOM05D003568 ORTHO05D004104 4.2e-23 110.9 62 85.5
Manes.01G252500 Manihot esculenta HOM05D003568 ORTHO05D004104 4.2e-23 110.9 62 87.1
DCAR_006948 Daucus carota HOM05D003568 ORTHO05D004104 5.4e-23 110.5 62 85.5
Glyma.07G046100 Glycine max HOM05D003568 ORTHO05D004104 5.4e-23 110.5 62 85.5
Glyma.16G014200 Glycine max HOM05D003568 ORTHO05D004104 5.4e-23 110.5 62 85.5
PSO478G3452 Papaver somniferum HOM05D003568 ORTHO05D004104 5.4e-23 110.5 62 85.5
Sed0000810 Sechium edule HOM05D003568 ORTHO05D004104 5.4e-23 110.5 62 85.5
THA.LOC104811828 Tarenaya hassleriana HOM05D003568 ORTHO05D004104 5.4e-23 110.5 62 85.5
EL10Ac5g12970 Beta vulgaris HOM05D003568 ORTHO05D004104 7.1e-23 110.2 62 83.9
Dinv09575 Davidia involucrata HOM05D003568 ORTHO05D004104 7.1e-23 110.2 62 85.5
ECA236G4463 Erigeron canadensis HOM05D003568 ORTHO05D004104 7.1e-23 110.2 62 85.5
Migut.N01148 Erythranthe guttata HOM05D003568 ORTHO05D004104 7.1e-23 110.2 62 85.5
HanXRQChr04g0120781 Helianthus annuus HOM05D003568 ORTHO05D004104 7.1e-23 110.2 62 85.5
Lsat_1_v5_gn_7_3960 Lactuca sativa HOM05D003568 ORTHO05D004104 7.1e-23 110.2 62 85.5
Lj7A507T47 Lonicera japonica HOM05D003568 ORTHO05D004104 7.1e-23 110.2 61 86.9
Lj9A588G62 Lonicera japonica HOM05D003568 ORTHO05D004104 7.1e-23 110.2 62 83.9
Atru.chr5.561 Acer truncatum HOM05D003568 ORTHO05D004104 9.3e-23 109.8 62 85.5
Atru.chr5.579 Acer truncatum HOM05D003568 ORTHO05D004104 9.3e-23 109.8 62 85.5
Aa31LG3G14860 Aethionema arabicum HOM05D003568 ORTHO05D004104 9.3e-23 109.8 62 83.9
AUR62030738 Chenopodium quinoa HOM05D003568 ORTHO05D004104 9.3e-23 109.8 62 85.5
AUR62036376 Chenopodium quinoa HOM05D003568 ORTHO05D004104 9.3e-23 109.8 62 85.5
MELO3C006082.2 Cucumis melo HOM05D003568 ORTHO05D004104 9.3e-23 109.8 62 85.5
CsaV3_3G008620 Cucumis sativus L. HOM05D003568 ORTHO05D004104 9.3e-23 109.8 62 85.5
MD07G1131500 Malus domestica HOM05D003568 ORTHO05D004104 9.3e-23 109.8 62 85.5
Nn1g01682 Nelumbo nucifera HOM05D003568 ORTHO05D004104 9.3e-23 109.8 61 86.9
Sed0024683 Sechium edule HOM05D003568 ORTHO05D004104 9.3e-23 109.8 62 85.5
TAR374G0165 Trochodendron aralioides HOM05D003568 ORTHO05D004104 9.3e-23 109.8 62 85.5
unitig_21.g20340 Utricularia gibba HOM05D003568 ORTHO05D004104 9.3e-23 109.8 62 82.3
VMungo0331G1030 Vigna mungo HOM05D003568 ORTHO05D004104 9.3e-23 109.8 62 83.9
Ah.12g059260 Amaranthus hybridus HOM05D003568 ORTHO05D004104 1.2e-22 109.4 61 85.2
arahy.Tifrunner.gnm1.ann1.Z56S5U Arachis hypogaea HOM05D003568 ORTHO05D004104 1.2e-22 109.4 62 83.9
Oeu036591.1 Olea europaea HOM05D003568 ORTHO05D004104 1.2e-22 109.4 61 86.9
PSO266G0033 Papaver somniferum HOM05D003568 ORTHO05D004104 1.2e-22 109.4 62 83.9
Hund23292 Selenicereus undatus HOM05D003568 ORTHO05D004104 1.6e-22 109.0 62 82.3
CiPaw.02G034600 Carya illinoinensis HOM05D003568 ORTHO05D004104 2.1e-22 108.6 62 83.9
Haze_15562 Corylus avellana HOM05D003568 ORTHO05D004104 2.1e-22 108.6 62 85.5
Os12g0238100 Oryza sativa ssp. japonica HOM05D003568 ORTHO05D004104 2.1e-22 108.6 62 83.9
Phvul.010G123000 Phaseolus vulgaris HOM05D003568 ORTHO05D004104 2.1e-22 108.6 62 83.9
arahy.Tifrunner.gnm1.ann1.PRYL24 Arachis hypogaea HOM05D003568 ORTHO05D004104 2.7e-22 108.2 62 82.3
CSS0021365 Camellia sinensis var. sinensis HOM05D003568 ORTHO05D004104 2.7e-22 108.2 62 83.9
CSS0044044 Camellia sinensis var. sinensis HOM05D003568 ORTHO05D004104 2.7e-22 108.2 62 83.9
Hund02118 Selenicereus undatus HOM05D003568 ORTHO05D004104 2.7e-22 108.2 61 85.2
TAR375G0541 Trochodendron aralioides HOM05D003568 ORTHO05D004104 2.7e-22 108.2 62 83.9
Zm00001eb133590 Zea mays HOM05D003568 ORTHO05D004104 2.7e-22 108.2 62 82.3
Lalb_Chr17g0343201 Lupinus albus HOM05D003568 ORTHO05D004104 3.5e-22 107.8 62 83.9
Oeu015218.3 Olea europaea HOM05D003568 ORTHO05D004104 3.5e-22 107.8 61 85.2
TWI59G1008 Tripterygium wilfordii HOM05D003568 ORTHO05D004104 4.6e-22 107.5 62 83.9
Sed0017270 Sechium edule HOM05D003568 ORTHO05D004104 6.0e-22 107.1 61 83.6
MBI03_g34513_MAGBIO Magnolia biondii HOM05D003568 ORTHO05D004104 1.7e-21 105.5 62 83.9
CDE07G1174 Ceratophyllum demersum HOM05D003568 ORTHO05D004104 3.0e-21 104.8 62 82.3
HanXRQChr02g0038861 Helianthus annuus HOM05D003568 ORTHO05D004104 3.0e-21 104.8 62 75.8
HanXRQChr13g0415591 Helianthus annuus HOM05D003568 ORTHO05D004104 3.0e-21 104.8 62 75.8
Lsat_1_v5_gn_3_138540 Lactuca sativa HOM05D003568 ORTHO05D004104 3.0e-21 104.8 62 77.4
SalBow6G0922 Salvia bowleyana HOM05D003568 ORTHO05D004104 3.9e-21 104.4 62 80.6
SalBow6G4826 Salvia bowleyana HOM05D003568 ORTHO05D004104 3.9e-21 104.4 62 80.6
Nn6g35074 Nelumbo nucifera HOM05D003568 ORTHO05D004104 1.1e-20 102.8 63 81.0
ATR0829G125 Amborella trichopoda HOM05D003568 ORTHO05D004104 1.9e-20 102.1 62 77.4
SEGI_32899 Sequoiadendron giganteum HOM05D003568 ORTHO05D004104 1.9e-20 102.1 62 79.0
ECA238G2843 Erigeron canadensis HOM05D003568 ORTHO05D004104 2.5e-20 101.7 62 74.2
Carub.0006s1087 Capsella rubella HOM05D003568 ORTHO05D004104 9.6e-20 99.8 62 77.4
Thhalv10012686m.g Eutrema salsugineum HOM05D003568 ORTHO05D004104 9.6e-20 99.8 62 75.8
HPP92_003241 Vanilla planifolia HOM05D003568 ORTHO05D004104 9.6e-20 99.8 59 79.7
BcaB01g05405 Brassica carinata HOM05D003568 ORTHO05D004104 1.6e-19 99.0 62 74.2
A03p05590 Brassica napus HOM05D003568 ORTHO05D004104 1.6e-19 99.0 62 74.2
A10p25450 Brassica napus HOM05D003568 ORTHO05D004104 1.6e-19 99.0 62 74.2
C03p06540 Brassica napus HOM05D003568 ORTHO05D004104 1.6e-19 99.0 62 74.2
C09p64520 Brassica napus HOM05D003568 ORTHO05D004104 1.6e-19 99.0 62 74.2
BolC3t13154H Brassica oleracea HOM05D003568 ORTHO05D004104 1.6e-19 99.0 62 74.2
BolC9t59286H Brassica oleracea HOM05D003568 ORTHO05D004104 1.6e-19 99.0 62 74.2
BraA03t09896Z Brassica rapa HOM05D003568 ORTHO05D004104 1.6e-19 99.0 62 74.2
BraA10t44609Z Brassica rapa HOM05D003568 ORTHO05D004104 1.6e-19 99.0 62 74.2
Sp6g31270 Schrenkiella parvula HOM05D003568 ORTHO05D004104 1.6e-19 99.0 62 74.2
AL6G23170 Arabidopsis lyrata HOM05D003568 ORTHO05D004104 6.2e-19 97.1 62 75.8
AT5G12370 Arabidopsis thaliana HOM05D003568 ORTHO05D004104 6.2e-19 97.1 62 75.8
CARHR200740 Cardamine hirsuta HOM05D003568 ORTHO05D004104 8.1e-19 96.7 62 74.2
Mapoly0070s0084 Marchantia polymorpha HOM05D003568 ORTHO05D004104 9.3e-15 83.2 63 66.7
FAN10G2437 Fragaria x ananassa HOM05D003568 ORTHO05D004104 1.6e-14 82.4 46 89.1
SMO329G0014 Selaginella moellendorffii HOM05D003568 ORTHO05D004104 4.6e-14 80.9 63 65.1
AagrBONN_evm.TU.Sc2ySwM_117.807 Anthoceros agrestis HOM05D003568 ORTHO05D004104 6.0e-14 80.5 61 67.2
CBR_g38471 Chara braunii HOM05D003568 ORTHO05D004104 1.5e-12 75.9 53 64.2
CDE06G2354 Ceratophyllum demersum HOM05D003568 ORTHO05D004104 2.5e-12 75.1 62 64.5
Pp3c10_23750 Physcomitrium patens HOM05D003568 ORTHO05D004104 1.8e-10 68.9 52 63.5
Pp3c17_2120 Physcomitrium patens HOM05D003568 ORTHO05D004104 9.0e-10 66.6 63 54.0
AagrBONN_evm.TU.Sc2ySwM_362.1439 Anthoceros agrestis HOM05D003568 ORTHO05D004104 1.6e-06 55.8 61 45.9


User provided reference genes

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