Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g018420.3 Solanum lycopersicum HOM05D000176 ORTHO05D000106 1.4e-110 402.9 189 100.0
Solyc11g150105.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 1.0e-102 376.7 188 93.1
Sopen06g017070 Solanum pennellii HOM05D000176 ORTHO05D000106 4.4e-101 371.3 188 92.6
Solyc07g019577.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 8.2e-100 367.1 188 91.0
Sopen06g004480 Solanum pennellii HOM05D000176 ORTHO05D000106 3.5e-98 361.7 188 89.9
Solyc12g056671.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 1.0e-97 360.1 188 89.9
PGSC0003DMG400000655 Solanum tuberosum HOM05D000176 ORTHO05D000106 1.5e-88 329.7 171 87.1
Sopen12g008340 Solanum pennellii HOM05D000176 ORTHO05D000106 9.5e-80 300.4 187 74.3
Solyc08g014245.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 2.8e-79 298.9 164 86.6
Sopen09g029870 Solanum pennellii HOM05D000176 ORTHO05D000106 2.8e-79 298.9 187 73.8
Solyc01g081584.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 4.7e-79 298.1 187 73.8
Solyc05g026520.2 Solanum lycopersicum HOM05D000176 ORTHO05D000106 3.0e-78 295.4 187 73.3
Solyc07g044815.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 8.9e-78 293.9 187 73.3
PGSC0003DMG400034839 Solanum tuberosum HOM05D000176 ORTHO05D000106 2.0e-77 292.7 183 73.8
Sopen01g034990 Solanum pennellii HOM05D000176 ORTHO05D000106 1.7e-76 289.7 179 74.3
Sopen03g022250 Solanum pennellii HOM05D000176 ORTHO05D000106 1.7e-76 289.7 179 74.3
Sopen04g029940 Solanum pennellii HOM05D000176 ORTHO05D000106 1.7e-76 289.7 179 74.3
PGSC0003DMG400010948 Solanum tuberosum HOM05D000176 ORTHO05D000106 1.2e-74 283.5 188 69.1
Solyc04g150170.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 4.0e-70 268.5 186 67.2
Solyc05g024385.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 1.2e-69 266.9 187 65.8
PGSC0003DMG400027876 Solanum tuberosum HOM05D000176 ORTHO05D000106 1.2e-69 266.9 188 67.0
PGSC0003DMG400025677 Solanum tuberosum HOM05D000176 ORTHO05D000106 2.5e-64 249.2 136 80.1
Solyc05g044513.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 4.3e-64 248.4 188 62.2
Solyc10g049667.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 3.7e-60 235.3 160 66.9
PGSC0003DMG400029935 Solanum tuberosum HOM05D000176 ORTHO05D000106 3.5e-58 228.8 188 59.6
Sopen07g014370 Solanum pennellii HOM05D000176 ORTHO05D000106 9.5e-56 220.7 127 86.6
Sopen01g009560 Solanum pennellii HOM05D000176 ORTHO05D000695 6.2e-55 218.0 188 59.0
Solyc03g150138.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 1.0e-49 200.7 94 93.6
Sopen08g006090 Solanum pennellii HOM05D000176 ORTHO05D000106 1.0e-49 200.7 105 92.4
Solyc03g005550.3 Solanum lycopersicum HOM05D000176 ORTHO05D000106 2.1e-47 193.0 110 77.3
PGSC0003DMG400011463 Solanum tuberosum HOM05D000176 ORTHO05D000106 2.8e-47 192.6 95 85.3
Sopen12g026140 Solanum pennellii HOM05D000176 ORTHO05D000106 3.1e-46 189.1 89 91.0
Solyc01g033995.1 Solanum lycopersicum HOM05D000638 ORTHO05D000801 4.0e-46 188.7 104 89.4
Solyc10g008267.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 5.2e-46 188.3 106 77.4
Sopen01g011760 Solanum pennellii HOM05D000176 ORTHO05D000106 6.8e-46 188.0 103 79.6
Solyc09g150111.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 2.6e-45 186.0 167 58.7
Solyc05g150125.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 9.9e-45 184.1 134 63.4
PGSC0003DMG400008330 Solanum tuberosum HOM05D000176 ORTHO05D000106 3.2e-43 179.1 106 74.5
Solyc07g150121.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 2.7e-42 176.0 89 85.4
Solyc08g016802.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 3.5e-42 175.6 132 66.7
Solyc08g150136.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 6.2e-39 164.9 120 66.7
Sopen01g015170 Solanum pennellii HOM05D000176 ORTHO05D000106 6.9e-38 161.4 129 60.5
Solyc10g051090.3 Solanum lycopersicum HOM05D006072 ORTHO05D007363 9.0e-38 161.0 113 63.7
Solyc07g042335.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 2.6e-37 159.5 87 88.5
Solyc12g042603.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 9.3e-35 151.0 79 92.4
Solyc02g030462.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 1.6e-34 150.2 107 68.2
Solyc11g044453.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 6.9e-30 134.8 106 58.5
PGSC0003DMG400019874 Solanum tuberosum HOM05D000176 ORTHO05D014553 1.2e-29 134.0 79 79.7
PGSC0003DMG400006264 Solanum tuberosum HOM05D000176 ORTHO05D000106 7.6e-29 131.3 90 70.0
Solyc12g042607.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 3.2e-27 125.9 61 88.5
PGSC0003DMG400021588 Solanum tuberosum HOM05D000176 ORTHO05D000106 1.0e-25 120.9 96 60.4
Sopen05g012360 Solanum pennellii HOM05D000176 ORTHO05D000106 2.5e-24 116.3 86 66.3
Sopen06g015770 Solanum pennellii HOM05D000176 ORTHO05D000106 2.1e-23 113.2 86 61.6
Sopen09g016220 Solanum pennellii HOM05D000176 ORTHO05D000106 2.8e-23 112.8 88 60.2
Solyc07g019498.1 Solanum lycopersicum HOM05D000176 ORTHO05D014553 4.0e-22 109.0 78 67.9
Solyc04g050685.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 3.4e-21 105.9 78 64.1
CAN.G1612.3 Capsicum annuum HOM05D000176 ORTHO05D000106 3.5e-18 95.9 74 62.2
Sopen04g021620 Solanum pennellii HOM05D000176 ORTHO05D000106 6.0e-18 95.1 67 65.7
Sopen07g010520 Solanum pennellii HOM05D000176 ORTHO05D000106 6.0e-18 95.1 53 77.4
Solyc03g059425.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 1.3e-17 94.0 88 56.8
CAN.G802.4 Capsicum annuum HOM05D000176 ORTHO05D000106 1.8e-17 93.6 75 58.7
Solyc02g065114.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 3.0e-17 92.8 72 61.1
Cc05_g12610 Coffea canephora HOM05D000176 ORTHO05D000106 1.9e-16 90.1 160 37.5
Solyc12g006100.2 Solanum lycopersicum HOM05D000176 ORTHO05D000106 7.4e-16 88.2 187 33.7
Sopen12g002060 Solanum pennellii HOM05D000176 ORTHO05D003511 3.7e-15 85.9 187 34.8
MSTRG.13026 Avicennia marina HOM05D000176 ORTHO05D000106 1.8e-14 83.6 186 34.4
Sopen08g020950 Solanum pennellii HOM05D007667 ORTHO05D008033 1.8e-14 83.6 109 44.0
Migut.M01636 Erythranthe guttata HOM05D000176 ORTHO05D000106 2.4e-14 83.2 158 34.2
Oeu017988.1 Olea europaea HOM05D000176 ORTHO05D000106 2.0e-13 80.1 156 32.7
CAN.G1102.4 Capsicum annuum HOM05D000176 ORTHO05D014553 2.6e-13 79.7 65 56.9
Sopen09g010870 Solanum pennellii HOM05D000176 ORTHO05D000106 3.4e-13 79.3 60 61.7
Oeu049412.1 Olea europaea HOM05D000176 ORTHO05D000106 4.5e-13 79.0 115 37.4
Rhsim03G0028500 Rhododendron simsii HOM05D000176 ORTHO05D000106 5.8e-13 78.6 153 30.7
Oeu049415.1 Olea europaea HOM05D000176 ORTHO05D000106 1.0e-12 77.8 105 40.0
SGA_v2.0_scaffold42G15967 Striga asiatica HOM05D000176 ORTHO05D000106 1.0e-12 77.8 130 37.7
ClCG11G000230 Citrullus lanatus HOM05D000176 ORTHO05D000106 2.2e-12 76.6 85 38.8
CsaV3_5G015580 Cucumis sativus L. HOM05D000176 ORTHO05D000106 3.8e-12 75.9 85 38.8
AL1G54690 Arabidopsis lyrata HOM05D000176 ORTHO05D003511 6.5e-12 75.1 115 33.0
AT1G48120 Arabidopsis thaliana HOM05D000176 ORTHO05D003511 6.5e-12 75.1 115 32.2
MELO3C022946.2 Cucumis melo HOM05D000176 ORTHO05D000106 8.4e-12 74.7 85 38.8
Sp1g35090 Schrenkiella parvula HOM05D000176 ORTHO05D003511 1.1e-11 74.3 115 32.2
Carub.0001s3722 Capsella rubella HOM05D000176 ORTHO05D003511 1.4e-11 73.9 115 33.9
CARHR037760 Cardamine hirsuta HOM05D000176 ORTHO05D003511 1.4e-11 73.9 115 33.0
Cc03_g15950 Coffea canephora HOM05D000176 ORTHO05D003511 1.4e-11 73.9 191 29.3
Sed0014738 Sechium edule HOM05D000176 ORTHO05D000106 1.9e-11 73.6 85 38.8
Cc03_g15850 Coffea canephora HOM05D000176 ORTHO05D000106 4.2e-11 72.4 93 38.7
THA.LOC104802612 Tarenaya hassleriana HOM05D000176 ORTHO05D003511 5.5e-11 72.0 115 34.8
Aa31LG10G5620 Aethionema arabicum HOM05D000176 ORTHO05D003511 7.1e-11 71.6 115 31.3
Thhalv10011184m.g Eutrema salsugineum HOM05D000176 ORTHO05D003511 7.1e-11 71.6 139 29.5
Peaxi162Scf00613g00816 Petunia axillaris HOM05D000176 ORTHO05D000106 7.1e-11 71.6 109 34.9
CSS0042023 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 9.3e-11 71.2 83 37.3
TWI39G1291 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 9.3e-11 71.2 88 39.8
A06p04680 Brassica napus HOM05D000176 ORTHO05D003511 1.6e-10 70.5 115 30.4
C06p02530 Brassica napus HOM05D000176 ORTHO05D003511 1.6e-10 70.5 115 30.4
BolC6t35381H Brassica oleracea HOM05D000176 ORTHO05D003511 1.6e-10 70.5 115 30.4
BraA06t23671Z Brassica rapa HOM05D000176 ORTHO05D003511 1.6e-10 70.5 115 30.4
CSS0004167 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.6e-10 70.5 99 34.3
CSS0024487 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.6e-10 70.5 99 34.3
CSS0026564 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.6e-10 70.5 99 34.3
Cc03_g09280 Coffea canephora HOM05D000176 ORTHO05D000106 1.6e-10 70.5 115 33.9
QL02p103239 Quercus lobata HOM05D000176 ORTHO05D000106 1.6e-10 70.5 89 36.0
CSS0021846 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 2.1e-10 70.1 83 37.3
CSS0025783 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 2.1e-10 70.1 83 37.3
CSS0037304 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 2.1e-10 70.1 83 37.3
CSS0044124 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 2.1e-10 70.1 83 37.3
CSS0045961 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 2.1e-10 70.1 83 37.3
TWI81G0566 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 2.1e-10 70.1 89 39.3
TWI38G1670 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 4.6e-10 68.9 90 41.1
Peaxi162Scf00120g00054 Petunia axillaris HOM05D000176 ORTHO05D000106 6.1e-10 68.6 88 36.4
Peaxi162Scf00299g00420 Petunia axillaris HOM05D000176 ORTHO05D000106 6.1e-10 68.6 88 36.4
CSS0011501 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 7.9e-10 68.2 99 33.3
Peaxi162Scf00464g00118 Petunia axillaris HOM05D000176 ORTHO05D000106 7.9e-10 68.2 88 35.2
Peaxi162Scf00038g02647 Petunia axillaris HOM05D000115 ORTHO05D003511 1.0e-09 67.8 84 34.5
Peaxi162Scf00351g00224 Petunia axillaris HOM05D000176 ORTHO05D000106 1.0e-09 67.8 88 35.2
Peaxi162Scf01320g00019 Petunia axillaris HOM05D000176 ORTHO05D000106 1.0e-09 67.8 88 35.2
TWI31G0719 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 1.0e-09 67.8 88 38.6
CSS0036437 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.3e-09 67.4 99 36.4
CSS0043966 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.3e-09 67.4 83 36.1
Peaxi162Scf00006g04510 Petunia axillaris HOM05D000176 ORTHO05D000106 1.3e-09 67.4 88 35.2
Peaxi162Scf00071g01148 Petunia axillaris HOM05D000176 ORTHO05D000106 1.3e-09 67.4 88 35.2
Peaxi162Scf00078g01138 Petunia axillaris HOM05D000176 ORTHO05D000106 1.3e-09 67.4 88 35.2
Peaxi162Scf00088g01011 Petunia axillaris HOM05D000176 ORTHO05D000106 1.3e-09 67.4 88 35.2
Peaxi162Scf00226g00414 Petunia axillaris HOM05D000176 ORTHO05D000106 1.3e-09 67.4 88 35.2
Peaxi162Scf00318g00718 Petunia axillaris HOM05D000176 ORTHO05D000106 1.3e-09 67.4 88 35.2
Peaxi162Scf00691g00622 Petunia axillaris HOM05D000176 ORTHO05D000106 1.3e-09 67.4 88 35.2
TWI79G1140 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 1.3e-09 67.4 88 37.5
CSS0006036 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.8e-09 67.0 83 34.9
CSS0030233 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.8e-09 67.0 83 34.9
CSS0048918 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.8e-09 67.0 83 34.9
CSS0007867 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 2.3e-09 66.6 83 34.9
Peaxi162Scf00401g00215 Petunia axillaris HOM05D000176 ORTHO05D000106 3.9e-09 65.9 88 35.2
Peaxi162Scf00803g00017 Petunia axillaris HOM05D000176 ORTHO05D000106 3.9e-09 65.9 88 34.1
CSS0028824 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 6.7e-09 65.1 102 32.4
TWI31G0542 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 6.7e-09 65.1 85 38.8
TWI75G1856 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 6.7e-09 65.1 85 38.8
CSS0049024 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.5e-08 63.9 106 30.2
Peaxi162Scf01108g00032 Petunia axillaris HOM05D000176 ORTHO05D000106 1.5e-08 63.9 85 35.3
TWI09G0559 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 1.9e-08 63.5 85 37.6
ECA240G0166 Erigeron canadensis HOM05D000176 ORTHO05D000106 4.3e-08 62.4 153 31.4
QL03p000009 Quercus lobata HOM05D000176 ORTHO05D000106 4.3e-08 62.4 128 25.8
QL04p000617 Quercus lobata HOM05D003810 ORTHO05D004416 4.3e-08 62.4 128 25.8
CSS0026252 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 5.7e-08 62.0 91 30.8
CSS0007859 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 9.7e-08 61.2 60 38.3
QL01p018788 Quercus lobata HOM05D000176 ORTHO05D000106 9.7e-08 61.2 78 42.3
CSS0017905 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 1.3e-07 60.8 76 34.2
QL02p071405 Quercus lobata HOM05D000176 ORTHO05D000106 1.3e-07 60.8 76 34.2
QL08p063032 Quercus lobata HOM05D002302 ORTHO05D002728 1.3e-07 60.8 76 35.5
QL09p020558 Quercus lobata HOM05D000176 ORTHO05D000106 1.3e-07 60.8 76 34.2
QL12p034017 Quercus lobata HOM05D000176 ORTHO05D000106 1.3e-07 60.8 76 34.2
Cc00_g16850 Coffea canephora HOM05D000176 ORTHO05D000106 1.6e-07 60.5 83 36.1
CSS0035420 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 2.8e-07 59.7 60 36.7
QL11p013596 Quercus lobata HOM05D000176 ORTHO05D000106 2.8e-07 59.7 83 33.7
Peaxi162Scf00596g00063 Petunia axillaris HOM05D000176 ORTHO05D000106 3.7e-07 59.3 79 32.9
CSS0006340 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 4.8e-07 58.9 60 36.7
Peaxi162Scf00102g00049 Petunia axillaris HOM05D000176 ORTHO05D000106 6.3e-07 58.5 85 31.8
Sopen06g011350 Solanum pennellii HOM05D000017 ORTHO05D009185 1.1e-06 57.8 88 38.6
Solyc07g150136.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 3.1e-06 56.2 32 75.0
Peaxi162Scf01310g00028 Petunia axillaris HOM05D000176 ORTHO05D000106 4.1e-06 55.8 79 32.9
Os01g0531200 Oryza sativa ssp. japonica HOM05D000176 ORTHO05D000106 5.3e-06 55.5 77 36.4
QL08p013497 Quercus lobata HOM05D000017 ORTHO05D007253 5.3e-06 55.5 157 25.5
Os01g0738500 Oryza sativa ssp. japonica HOM05D000176 ORTHO05D000106 6.9e-06 55.1 77 36.4


User provided reference genes

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