Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g017860.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 4.3e-30 134.0 70 100.0
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 8.5e-18 93.2 69 71.0
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 1.4e-17 92.4 69 71.0
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.6e-11 72.4 69 49.3
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 5.9e-11 70.5 69 46.4
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 1.0e-10 69.7 69 47.8
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 1.0e-10 69.7 69 44.9
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 1.0e-10 69.7 69 47.8
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 2.2e-10 68.6 69 50.7
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 2.2e-10 68.6 69 50.7
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 2.9e-10 68.2 55 58.2
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 3.8e-10 67.8 69 50.7
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 1.5e-09 65.9 69 42.0
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.5e-09 65.9 69 44.9
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 1.9e-09 65.5 55 52.7
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 2.5e-09 65.1 55 54.5
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 2.5e-09 65.1 59 49.2
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 2.5e-09 65.1 55 54.5
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 5.5e-09 63.9 56 50.0
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 7.2e-09 63.5 56 48.2
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 1.2e-08 62.8 56 48.2
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 1.2e-08 62.8 55 50.9
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 1.6e-08 62.4 69 39.1
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 2.1e-08 62.0 66 42.4
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 2.7e-08 61.6 55 50.9
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 3.6e-08 61.2 55 52.7
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 3.6e-08 61.2 56 48.2
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 4.7e-08 60.8 55 43.6
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 4.7e-08 60.8 55 50.9
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 4.7e-08 60.8 55 50.9
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 4.7e-08 60.8 54 48.1
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 6.1e-08 60.5 69 42.0
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 8.0e-08 60.1 55 49.1
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 8.0e-08 60.1 55 43.6
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 1.0e-07 59.7 50 50.0
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 1.4e-07 59.3 52 48.1
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 1.4e-07 59.3 62 46.8
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 1.4e-07 59.3 50 48.0
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 1.8e-07 58.9 56 42.9
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 1.8e-07 58.9 59 42.4
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 1.8e-07 58.9 69 40.6
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 3.0e-07 58.2 53 50.9
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 3.0e-07 58.2 55 47.3
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 3.0e-07 58.2 59 45.8
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 3.0e-07 58.2 59 45.8
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 3.0e-07 58.2 69 42.0
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 3.0e-07 58.2 69 39.1
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 5.2e-07 57.4 52 44.2
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 6.7e-07 57.0 56 44.6
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 6.7e-07 57.0 50 48.0
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 8.8e-07 56.6 56 41.1
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 8.8e-07 56.6 56 44.6
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 8.8e-07 56.6 56 44.6
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 8.8e-07 56.6 56 44.6
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 8.8e-07 56.6 56 44.6
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 8.8e-07 56.6 50 50.0
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 8.8e-07 56.6 50 50.0
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 8.8e-07 56.6 50 48.0
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 8.8e-07 56.6 55 45.5
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 1.2e-06 56.2 59 45.8
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 1.2e-06 56.2 55 41.8
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 1.2e-06 56.2 54 44.4
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 1.5e-06 55.8 55 41.8
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 1.5e-06 55.8 55 41.8
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 1.5e-06 55.8 56 44.6
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 1.5e-06 55.8 56 44.6
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 1.5e-06 55.8 56 44.6
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 1.5e-06 55.8 56 46.4
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 1.5e-06 55.8 55 45.5
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.5e-06 55.8 50 50.0
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.5e-06 55.8 55 41.8
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 1.5e-06 55.8 55 43.6
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 1.5e-06 55.8 55 41.8
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 2.0e-06 55.5 59 42.4
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 2.0e-06 55.5 73 38.4
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 2.0e-06 55.5 55 45.5
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 2.0e-06 55.5 57 42.1
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 2.6e-06 55.1 59 44.1
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 2.6e-06 55.1 50 50.0
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 2.6e-06 55.1 55 43.6
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 2.6e-06 55.1 52 48.1
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 3.3e-06 54.7 56 44.6
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 3.3e-06 54.7 59 42.4
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 3.3e-06 54.7 66 37.9
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 4.4e-06 54.3 50 44.0
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 5.7e-06 53.9 56 42.9
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 5.7e-06 53.9 55 38.2
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 5.7e-06 53.9 57 45.6
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 7.5e-06 53.5 56 42.9
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 7.5e-06 53.5 58 44.8
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 7.5e-06 53.5 55 40.0
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 7.5e-06 53.5 66 37.9
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 9.7e-06 53.1 55 43.6
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 9.7e-06 53.1 50 46.0
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 9.7e-06 53.1 56 41.1
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 9.7e-06 53.1 52 42.3


User provided reference genes

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