Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g017790.1 Solanum lycopersicum HOM05D002110 ORTHO05D001148 8.1e-58 226.9 115 100.0
Nitab4.5_0006072g0010 Nicotiana tabacum HOM05D002110 ORTHO05D001148 2.4e-33 145.6 114 69.3
PGSC0003DMG400002807 Solanum tuberosum HOM05D002110 ORTHO05D001148 3.1e-33 145.2 113 71.7
PGSC0003DMG400041351 Solanum tuberosum HOM05D002110 ORTHO05D001148 6.9e-33 144.1 114 70.2
Solyc01g100290.4 Solanum lycopersicum HOM05D002110 ORTHO05D001148 2.9e-31 138.7 113 66.4
Peaxi162Scf00673g00028 Petunia axillaris HOM05D002110 ORTHO05D001148 3.8e-31 138.3 114 67.5
Sopen01g043810 Solanum pennellii HOM05D002110 ORTHO05D001148 1.4e-30 136.3 113 65.5
Nitab4.5_0000368g0290 Nicotiana tabacum HOM05D002110 ORTHO05D001148 6.7e-28 127.5 113 65.5
PGSC0003DMG400027939 Solanum tuberosum HOM05D016458 ORTHO05D001148 5.9e-16 87.8 60 81.7
Dinv24422 Davidia involucrata HOM05D002110 ORTHO05D001148 6.1e-13 77.8 105 44.8
Dinv30868 Davidia involucrata HOM05D002110 ORTHO05D001148 3.9e-12 75.1 111 41.4
MSTRG.16398 Avicennia marina HOM05D002110 ORTHO05D001148 1.5e-11 73.2 105 41.0
Oeu045891.1 Olea europaea HOM05D002110 ORTHO05D001148 4.3e-11 71.6 98 40.8
Sabra05G0013200 Salix brachista HOM05D002110 ORTHO05D001148 9.7e-11 70.5 109 39.4
Ciclev10000207m.g Citrus clementina HOM05D002110 ORTHO05D001148 2.2e-10 69.3 109 36.7
Cc03_g01150 Coffea canephora HOM05D002110 ORTHO05D001148 2.8e-10 68.9 109 39.4
Potri.005G019700 Populus trichocarpa HOM05D002110 ORTHO05D001148 2.8e-10 68.9 99 41.4
Sabra05G0026000 Salix brachista HOM05D002110 ORTHO05D002923 3.7e-10 68.6 109 38.5
GSVIVG01031214001 Vitis vinifera HOM05D002110 ORTHO05D001148 4.8e-10 68.2 112 38.4
Actinidia16849 Actinidia chinensis HOM05D002110 ORTHO05D001148 6.3e-10 67.8 100 45.0
CSS0027216 Camellia sinensis var. sinensis HOM05D002110 ORTHO05D001148 8.2e-10 67.4 109 35.8
Hma1.2p1_0008F-1.1_g005780 Hydrangea macrophylla HOM05D002110 ORTHO05D001148 1.4e-09 66.6 107 43.0
MD04G1195500 Malus domestica HOM05D002110 ORTHO05D001148 5.3e-09 64.7 99 39.4
Sabra13G0009100 Salix brachista HOM05D002110 ORTHO05D001148 6.9e-09 64.3 109 39.4
Manes.08G112600 Manihot esculenta HOM05D002110 ORTHO05D001148 1.2e-08 63.5 108 40.7
CSS0050364 Camellia sinensis var. sinensis HOM05D002110 ORTHO05D001148 1.5e-08 63.2 111 38.7
CiPaw.07G027700 Carya illinoinensis HOM05D002110 ORTHO05D001148 2.6e-08 62.4 98 37.8
Atru.chr2.146 Acer truncatum HOM05D002110 ORTHO05D001148 3.4e-08 62.0 109 35.8
Cfa006684 Carpinus fangiana HOM05D002110 ORTHO05D001148 3.4e-08 62.0 98 35.7
Migut.B00995 Erythranthe guttata HOM05D002110 ORTHO05D001148 3.4e-08 62.0 74 43.2
MSTRG.20398 Avicennia marina HOM05D002110 ORTHO05D001148 5.9e-08 61.2 108 38.0
VMungo0720G2097 Vigna mungo HOM05D002110 ORTHO05D001148 1.0e-07 60.5 66 43.9
Haze_04082 Corylus avellana HOM05D002110 ORTHO05D001148 1.3e-07 60.1 97 36.1
QL03p018272 Quercus lobata HOM05D002110 ORTHO05D001148 1.3e-07 60.1 97 38.1
Haze_01085 Corylus avellana HOM05D002110 ORTHO05D001148 1.7e-07 59.7 111 34.2
SGA_v2.0_scaffold4G01952 Striga asiatica HOM05D002110 ORTHO05D001148 1.7e-07 59.7 99 33.3
Cfa015480 Carpinus fangiana HOM05D002110 ORTHO05D001148 2.2e-07 59.3 109 34.9
Glyma.10G148200 Glycine max HOM05D002110 ORTHO05D001148 3.8e-07 58.5 99 32.3
Medtr1g083850 Medicago truncatula HOM05D002110 ORTHO05D001148 3.8e-07 58.5 85 34.1
SalBow7G1336 Salvia bowleyana HOM05D002110 ORTHO05D001148 3.8e-07 58.5 111 29.7
Eucgr.B01664 Eucalyptus grandis HOM05D002110 ORTHO05D001148 5.0e-07 58.2 108 38.0
Phvul.009G254000 Phaseolus vulgaris HOM05D002110 ORTHO05D001148 5.0e-07 58.2 105 35.2
MELO3C004200.2 Cucumis melo HOM05D002110 ORTHO05D001148 8.5e-07 57.4 100 38.0
TPR.G30869 Trifolium pratense HOM05D002110 ORTHO05D001148 8.5e-07 57.4 106 33.0
Lalb_Chr04g0260491 Lupinus albus HOM05D002110 ORTHO05D001148 1.1e-06 57.0 97 34.0
CiPaw.01G142000 Carya illinoinensis HOM05D002110 ORTHO05D001148 1.4e-06 56.6 111 34.2
Glyma.09G039000 Glycine max HOM05D002110 ORTHO05D001148 1.4e-06 56.6 104 34.6
Glyma.20G239400 Glycine max HOM05D002110 ORTHO05D001148 1.4e-06 56.6 106 31.1
TAR365G0698 Trochodendron aralioides HOM05D002110 ORTHO05D001148 1.4e-06 56.6 105 32.4
Ca_01879_v3 Cicer arietinum L. HOM05D002110 ORTHO05D001148 1.9e-06 56.2 97 32.0
Cc02_g34790 Coffea canephora HOM05D002110 ORTHO05D001148 2.5e-06 55.8 98 36.7
Potri.013G010500 Populus trichocarpa HOM05D002110 ORTHO05D001148 2.5e-06 55.8 80 42.5
Lj1g0027492 Lotus japonicus HOM05D002110 ORTHO05D001148 3.2e-06 55.5 111 33.3
Lalb_Chr02g0147901 Lupinus albus HOM05D002110 ORTHO05D001148 3.2e-06 55.5 109 31.2
Oeu006438.1 Olea europaea HOM05D002110 ORTHO05D001148 3.2e-06 55.5 98 35.7
Phvul.001G225800 Phaseolus vulgaris HOM05D002110 ORTHO05D001148 3.2e-06 55.5 79 36.7
Sed0010663 Sechium edule HOM05D002110 ORTHO05D001148 3.2e-06 55.5 101 37.6
VMungo1215G1777 Vigna mungo HOM05D002110 ORTHO05D001148 3.2e-06 55.5 97 34.0
CsaV3_2G006910 Cucumis sativus L. HOM05D002110 ORTHO05D001148 4.2e-06 55.1 100 37.0
Hma1.2p1_0013F.1_g008920 Hydrangea macrophylla HOM05D002110 ORTHO05D001148 4.2e-06 55.1 110 33.6
Oeu016267.1 Olea europaea HOM05D002110 ORTHO05D001148 4.2e-06 55.1 98 33.7
MELO3C021285.2 Cucumis melo HOM05D002110 ORTHO05D001148 5.5e-06 54.7 113 33.6
Dinv02077 Davidia involucrata HOM05D002110 ORTHO05D001148 5.5e-06 54.7 109 34.9
Thecc.05G320800 Theobroma cacao HOM05D002110 ORTHO05D001148 5.5e-06 54.7 97 29.9
VMungo1309G1815 Vigna mungo HOM05D002110 ORTHO05D001148 5.5e-06 54.7 106 36.8
COL.COLO4_04137 Corchorus olitorius HOM05D002110 ORTHO05D001148 9.4e-06 53.9 96 31.2
Glyma.15G144100 Glycine max HOM05D002110 ORTHO05D001148 9.4e-06 53.9 105 35.2
Phvul.003G110900 Phaseolus vulgaris HOM05D002110 ORTHO05D001148 9.4e-06 53.9 97 33.0
QL06p011361 Quercus lobata HOM05D002110 ORTHO05D001148 9.4e-06 53.9 97 35.1


User provided reference genes

Program Settings