Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g012410.3 Solanum lycopersicum HOM05D003837 ORTHO05D004751 8.3e-154 547.0 269 100.0
Sopen10g006240 Solanum pennellii HOM05D003837 ORTHO05D004751 5.9e-152 540.8 269 98.9
PGSC0003DMG400006508 Solanum tuberosum HOM05D003837 ORTHO05D004751 1.7e-151 539.3 269 98.1
Nitab4.5_0000386g0040 Nicotiana tabacum HOM05D003837 ORTHO05D004751 3.7e-146 521.5 269 94.8
CAN.G116.14 Capsicum annuum HOM05D003837 ORTHO05D004751 7.0e-145 517.3 269 94.1
Nitab4.5_0002811g0010 Nicotiana tabacum HOM05D003837 ORTHO05D004751 4.5e-144 514.6 269 93.7
Gorai.004G042000 Gossypium raimondii HOM05D003837 ORTHO05D004751 4.9e-138 494.6 269 88.1
Cc02_g38180 Coffea canephora HOM05D003837 ORTHO05D004751 1.1e-137 493.4 269 88.1
Gohir.D08G043400 Gossypium hirsutum HOM05D003837 ORTHO05D004751 1.4e-137 493.0 269 87.7
Gohir.A08G032500 Gossypium hirsutum HOM05D003837 ORTHO05D004751 3.2e-137 491.9 269 88.1
Thecc.01G357600 Theobroma cacao HOM05D003837 ORTHO05D004751 4.1e-137 491.5 269 87.4
Duzib138G0194 Durio zibethinus HOM05D003837 ORTHO05D004751 1.6e-136 489.6 269 87.0
MSTRG.17276 Avicennia marina HOM05D003837 ORTHO05D004751 1.0e-135 486.9 269 86.2
SalBow3G2595 Salvia bowleyana HOM05D003837 ORTHO05D004751 2.3e-135 485.7 270 86.7
Migut.B01769 Erythranthe guttata HOM05D003837 ORTHO05D004751 3.3e-134 481.9 269 86.6
QL04p053649 Quercus lobata HOM05D003837 ORTHO05D004751 1.2e-133 479.9 268 85.4
CiPaw.01G063000 Carya illinoinensis HOM05D003837 ORTHO05D004751 4.7e-133 478.0 269 84.4
arahy.Tifrunner.gnm1.ann1.8FQY9T Arachis hypogaea HOM05D003837 ORTHO05D004751 6.2e-133 477.6 269 85.1
arahy.Tifrunner.gnm1.ann1.LGM3J9 Arachis hypogaea HOM05D003837 ORTHO05D004751 1.0e-132 476.9 269 84.8
Oeu010619.1 Olea europaea HOM05D003837 ORTHO05D004751 1.0e-132 476.9 269 84.8
Potri.014G086100 Populus trichocarpa HOM05D003837 ORTHO05D004751 1.4e-132 476.5 269 85.1
GSVIVG01026949001 Vitis vinifera HOM05D003837 ORTHO05D004751 3.1e-132 475.3 269 84.0
arahy.Tifrunner.gnm1.ann1.50MGD9 Arachis hypogaea HOM05D003837 ORTHO05D004751 4.0e-132 474.9 269 84.8
CANSAT56G1308 Cannabis sativa HOM05D003837 ORTHO05D004751 4.0e-132 474.9 269 83.6
Dinv43830 Davidia involucrata HOM05D003837 ORTHO05D004751 1.5e-131 473.0 269 84.0
TAR629G3438 Trochodendron aralioides HOM05D003837 ORTHO05D004751 2.0e-131 472.6 269 82.9
Eucgr.E01551 Eucalyptus grandis HOM05D003837 ORTHO05D004751 2.6e-131 472.2 269 82.5
Hma1.2p1_0780F.1_g216730 Hydrangea macrophylla HOM05D003837 ORTHO05D004751 2.6e-131 472.2 267 84.3
Sabra14G0062400 Salix brachista HOM05D003837 ORTHO05D004751 4.4e-131 471.5 269 84.0
Psat3g107800 Pisum sativum HOM05D003837 ORTHO05D004751 7.5e-131 470.7 269 83.3
Sed0000473 Sechium edule HOM05D003837 ORTHO05D004751 9.8e-131 470.3 269 84.0
MELO3C021202.2 Cucumis melo HOM05D003837 ORTHO05D004751 1.3e-130 469.9 270 84.1
Glyma.18G234200 Glycine max HOM05D003837 ORTHO05D004751 1.3e-130 469.9 269 84.0
Manes.01G255600 Manihot esculenta HOM05D003837 ORTHO05D004751 1.3e-130 469.9 263 85.2
arahy.Tifrunner.gnm1.ann1.MHF7VE Arachis hypogaea HOM05D003837 ORTHO05D004751 2.9e-130 468.8 269 83.6
ECA236G1077 Erigeron canadensis HOM05D003837 ORTHO05D004751 3.7e-130 468.4 269 83.6
FAN10G2900 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.7e-130 468.4 269 81.8
MD01G1065200 Malus domestica HOM05D003837 ORTHO05D004751 3.7e-130 468.4 269 81.8
MBI18_g02839_MAGBIO Magnolia biondii HOM05D003837 ORTHO05D004751 6.4e-130 467.6 269 82.2
Ah.05g180500 Amaranthus hybridus HOM05D003837 ORTHO05D004751 8.3e-130 467.2 271 82.3
FvH4_7g14620 Fragaria vesca HOM05D003837 ORTHO05D004751 8.3e-130 467.2 269 81.8
FAN06G1674 Fragaria x ananassa HOM05D003837 ORTHO05D004751 8.3e-130 467.2 269 81.8
Migut.B01768 Erythranthe guttata HOM05D003837 ORTHO05D004751 1.1e-129 466.8 271 84.5
Thhalv10001586m.g Eutrema salsugineum HOM05D003837 ORTHO05D004751 1.1e-129 466.8 269 81.8
RcHm_v2.0_Chr1g0356141 Rosa chinensis HOM05D003837 ORTHO05D004751 1.4e-129 466.5 269 82.2
AUR62004375 Chenopodium quinoa HOM05D003837 ORTHO05D004751 2.4e-129 465.7 271 82.7
EL10Ac1g00400 Beta vulgaris HOM05D003837 ORTHO05D004751 3.2e-129 465.3 274 82.5
vmacro21886 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 3.2e-129 465.3 269 82.2
vmacro23130 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 3.2e-129 465.3 269 82.2
Lsat_1_v5_gn_7_4380 Lactuca sativa HOM05D003837 ORTHO05D004751 4.1e-129 464.9 266 82.3
Atru.chr5.511 Acer truncatum HOM05D003837 ORTHO05D004751 5.4e-129 464.5 269 81.0
AL4G45220 Arabidopsis lyrata HOM05D003837 ORTHO05D004751 5.4e-129 464.5 269 82.2
PGR042G3540 Punica granatum HOM05D003837 ORTHO05D004751 5.4e-129 464.5 270 82.6
Rhsim01G0163300 Rhododendron simsii HOM05D003837 ORTHO05D004751 5.4e-129 464.5 269 82.2
AT2G45990 Arabidopsis thaliana HOM05D003837 ORTHO05D004751 7.0e-129 464.2 269 82.2
FAN01G2145 Fragaria x ananassa HOM05D003837 ORTHO05D004751 9.2e-129 463.8 269 81.0
Lj9A584G62 Lonicera japonica HOM05D003837 ORTHO05D004751 9.2e-129 463.8 268 82.8
Sp4g28060 Schrenkiella parvula HOM05D003837 ORTHO05D004751 9.2e-129 463.8 269 82.2
AUR62022582 Chenopodium quinoa HOM05D003837 ORTHO05D004751 1.6e-128 463.0 271 81.9
FAN03G2321 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.0e-128 462.6 275 80.4
Medtr7g077870 Medicago truncatula HOM05D003837 ORTHO05D004751 2.0e-128 462.6 269 82.2
FAN10G2259 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.7e-128 462.2 275 80.0
unitig_61.g26385 Utricularia gibba HOM05D003837 ORTHO05D004751 2.7e-128 462.2 268 82.8
Phvul.008G061600 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 3.5e-128 461.8 269 82.9
FAN01G0904 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.0e-128 461.1 269 81.0
FAN06G4414 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.8e-128 460.7 275 80.0
Rhsim01G0190400 Rhododendron simsii HOM05D003837 ORTHO05D004751 1.3e-127 459.9 269 81.4
Aa31LG1G27400 Aethionema arabicum HOM05D003837 ORTHO05D004751 2.3e-127 459.1 269 81.0
Carub.0004s2869 Capsella rubella HOM05D003837 ORTHO05D004751 6.6e-127 457.6 269 81.0
Ca_07930_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 3.3e-126 455.3 281 77.9
BcaC02g12159 Brassica carinata HOM05D003837 ORTHO05D004751 4.3e-126 454.9 270 81.5
CARHR141260 Cardamine hirsuta HOM05D003837 ORTHO05D004751 9.5e-126 453.8 269 80.7
Haze_15524 Corylus avellana HOM05D003837 ORTHO05D004751 1.6e-125 453.0 306 74.8
Prupe.2G172200 Prunus persica HOM05D003837 ORTHO05D004751 1.6e-125 453.0 269 81.4
arahy.Tifrunner.gnm1.ann1.AX1MHW Arachis hypogaea HOM05D003837 ORTHO05D004751 4.7e-125 451.4 269 81.8
C04p06910 Brassica napus HOM05D003837 ORTHO05D004751 6.2e-125 451.1 270 80.7
A05p05980 Brassica napus HOM05D003837 ORTHO05D004751 8.1e-125 450.7 270 80.7
BraA05t19561Z Brassica rapa HOM05D003837 ORTHO05D004751 3.1e-124 448.7 270 80.4
DCAR_025196 Daucus carota HOM05D003837 ORTHO05D004751 1.2e-123 446.8 269 80.7
PSO017G1131 Papaver somniferum HOM05D003837 ORTHO05D004751 1.5e-123 446.4 269 77.0
CANSAT56G2444 Cannabis sativa HOM05D003837 ORTHO05D004751 2.0e-123 446.0 269 79.2
Lalb_Chr04g0253801 Lupinus albus HOM05D003837 ORTHO05D004751 1.3e-122 443.4 267 79.0
FvH4_7g14540 Fragaria vesca HOM05D003837 ORTHO05D004751 2.9e-122 442.2 269 79.2
Lj1g0003798 Lotus japonicus HOM05D003837 ORTHO05D004751 2.9e-122 442.2 269 78.1
arahy.Tifrunner.gnm1.ann1.1HB2SZ Arachis hypogaea HOM05D003837 ORTHO05D004751 3.7e-122 441.8 269 77.7
VMungo1383G2611 Vigna mungo HOM05D003837 ORTHO05D004751 3.7e-122 441.8 268 78.7
BolC4t22312H Brassica oleracea HOM05D003837 ORTHO05D004751 8.3e-122 440.7 286 76.2
Ciclev10021690m.g Citrus clementina HOM05D003837 ORTHO05D004751 1.1e-121 440.3 269 79.2
arahy.Tifrunner.gnm1.ann1.SJDP6S Arachis hypogaea HOM05D003837 ORTHO05D004751 1.4e-121 439.9 269 77.7
Medtr7g077880 Medicago truncatula HOM05D003837 ORTHO05D004751 1.4e-121 439.9 269 77.7
Glyma.18G234300 Glycine max HOM05D003837 ORTHO05D004751 1.9e-121 439.5 269 77.7
Peaxi162Scf00008g02421 Petunia axillaris HOM05D003837 ORTHO05D004751 1.9e-121 439.5 269 82.5
TPR.G37852 Trifolium pratense HOM05D003837 ORTHO05D004751 1.9e-121 439.5 269 77.7
Lalb_Chr10g0095951 Lupinus albus HOM05D003837 ORTHO05D004751 3.2e-121 438.7 267 77.9
CsaV3_6G000640 Cucumis sativus L. HOM05D003837 ORTHO05D004751 5.4e-121 438.0 269 79.2
Ciclev10021689m.g Citrus clementina HOM05D003837 ORTHO05D004751 1.2e-120 436.8 269 76.6
TWI14G0320 Tripterygium wilfordii HOM05D003837 ORTHO05D004751 2.1e-120 436.0 269 78.4
PSO063G2236 Papaver somniferum HOM05D003837 ORTHO05D004751 2.7e-120 435.6 261 77.4
ClCG06G003610 Citrullus lanatus HOM05D003837 ORTHO05D004751 4.6e-120 434.9 269 78.8
TPR.G37767 Trifolium pratense HOM05D003837 ORTHO05D004751 4.6e-120 434.9 269 78.1
Psat3g107760 Pisum sativum HOM05D003837 ORTHO05D004751 1.0e-119 433.7 269 77.0
HPP92_025965 Vanilla planifolia HOM05D003837 ORTHO05D004751 2.3e-119 432.6 269 75.8
Os07g0418000 Oryza sativa ssp. japonica HOM05D003837 ORTHO05D004751 3.9e-119 431.8 268 75.4
Actinidia02836 Actinidia chinensis HOM05D003837 ORTHO05D004751 5.1e-119 431.4 275 77.8
THA.LOC104802037 Tarenaya hassleriana HOM05D003837 ORTHO05D004751 1.9e-118 429.5 269 77.7
FAN06G3658 Fragaria x ananassa HOM05D003837 ORTHO05D004751 9.5e-118 427.2 269 76.6
Cpa.g.sc11.20 Carica papaya HOM05D003837 ORTHO05D004751 1.6e-117 426.4 269 77.0
Zm00001eb094870 Zea mays HOM05D003837 ORTHO05D004751 3.6e-117 425.2 268 74.3
RcHm_v2.0_Chr1g0356101 Rosa chinensis HOM05D003837 ORTHO05D004751 8.1e-117 424.1 269 75.5
Phvul.008G061500 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 1.4e-116 423.3 267 76.4
CDE05G2325 Ceratophyllum demersum HOM05D003837 ORTHO05D004751 2.3e-116 422.5 266 76.3
arahy.Tifrunner.gnm1.ann1.I86G4G Arachis hypogaea HOM05D003837 ORTHO05D004751 5.2e-116 421.4 244 83.2
Cfa003906 Carpinus fangiana HOM05D003837 ORTHO05D004751 3.4e-115 418.7 252 81.0
FAN06G0309 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.4e-115 418.7 269 75.1
HanXRQChr04g0121181 Helianthus annuus HOM05D003837 ORTHO05D004751 3.4e-115 418.7 269 74.3
Ca_07931_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 7.6e-115 417.5 269 73.2
COL.COLO4_12726 Corchorus olitorius HOM05D003837 ORTHO05D004751 9.9e-115 417.2 269 77.3
VMungo1383G0868 Vigna mungo HOM05D003837 ORTHO05D004751 2.9e-114 415.6 269 76.2
SEGI_21942 Sequoiadendron giganteum HOM05D003837 ORTHO05D004751 9.2e-113 410.6 269 71.7
Hund27264 Selenicereus undatus HOM05D003837 ORTHO05D004751 3.5e-112 408.7 269 74.0
FAN06G3536 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.1e-110 403.7 276 69.9
FAN10G0266 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.5e-110 403.3 270 71.9
FAN10G3579 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.5e-110 403.3 270 71.9
FAN01G2925 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.3e-110 401.7 276 70.7
FAN16G2327 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.1e-109 399.4 271 70.1
ATR0680G377 Amborella trichopoda HOM05D003837 ORTHO05D004751 2.8e-109 399.1 235 79.6
Nn1g01565 Nelumbo nucifera HOM05D003837 ORTHO05D004751 6.2e-109 397.9 269 71.0
FvH4_3g44250 Fragaria vesca HOM05D003837 ORTHO05D004751 1.1e-108 397.1 271 69.7
HanXRQChr04g0121171 Helianthus annuus HOM05D003837 ORTHO05D004751 1.1e-108 397.1 269 70.3
FAN06G3952 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.8e-108 396.4 276 69.2
FAN11G2601 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.0e-108 395.2 271 69.4
AagrBONN_evm.TU.Sc2ySwM_228.2910 Anthoceros agrestis HOM05D003837 ORTHO05D004751 5.8e-107 391.3 270 69.3
Ca_07932_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 5.8e-107 391.3 269 71.0
SMO118G0280 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 2.9e-106 389.0 267 68.9
arahy.Tifrunner.gnm1.ann1.438NR4 Arachis hypogaea HOM05D003837 ORTHO05D004751 6.4e-106 387.9 272 73.2
AagrBONN_evm.TU.Sc2ySwM_228.5133 Anthoceros agrestis HOM05D003837 ORTHO05D004751 1.1e-105 387.1 269 68.4
Pp3c11_2170 Physcomitrium patens HOM05D003837 ORTHO05D004751 1.9e-105 386.3 270 68.1
Mapoly0002s0196 Marchantia polymorpha HOM05D003837 ORTHO05D004751 1.6e-104 383.3 270 68.5
RcHm_v2.0_Chr1g0356011 Rosa chinensis HOM05D003837 ORTHO05D004751 1.6e-104 383.3 270 68.9
Pp3c23_10590 Physcomitrium patens HOM05D003837 ORTHO05D004751 6.0e-104 381.3 271 67.9
RcHm_v2.0_Chr1g0356041 Rosa chinensis HOM05D003837 ORTHO05D004751 3.0e-103 379.0 270 68.5
Lj1g0022323 Lotus japonicus HOM05D003837 ORTHO05D004751 3.9e-103 378.6 236 77.1
RcHm_v2.0_Chr1g0356051 Rosa chinensis HOM05D003837 ORTHO05D004751 5.6e-102 374.8 271 68.6
Atru.chr5.512 Acer truncatum HOM05D003837 ORTHO05D004751 2.1e-101 372.9 212 82.1
RcHm_v2.0_Chr1g0355961 Rosa chinensis HOM05D003837 ORTHO05D004751 2.1e-101 372.9 271 67.5
Actinidia02835 Actinidia chinensis HOM05D003837 ORTHO05D004751 4.3e-94 348.6 197 84.8
Pp3c24_7060 Physcomitrium patens HOM05D003837 ORTHO05D004751 5.6e-94 348.2 249 66.3
AUR62004376 Chenopodium quinoa HOM05D003837 ORTHO05D004751 7.4e-94 347.8 211 79.6
CBR_g30756 Chara braunii HOM05D003837 ORTHO05D004751 2.2e-90 336.3 295 58.3
FAN10G2608 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.1e-89 331.3 189 80.4
Sc26g0000870 Simmondsia chinensis HOM05D003837 ORTHO05D004751 9.3e-89 330.9 187 84.0
Glyma.09G258500 Glycine max HOM05D003837 ORTHO05D004751 6.0e-88 328.2 217 76.0
SMO118G0457 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 1.3e-77 293.9 269 56.1
CSS0003015 Camellia sinensis var. sinensis HOM05D003837 ORTHO05D004751 2.1e-64 250.0 188 67.6
FAN10G2382 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.4e-60 237.3 133 82.0
FvH4_7g14570 Fragaria vesca HOM05D003837 ORTHO05D004751 3.1e-60 236.1 143 78.3
vmacro20932 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 1.1e-57 227.6 181 64.1
Cre06.g278117 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 1.1e-54 217.6 270 43.0
Glyma.09G258400 Glycine max HOM05D003837 ORTHO05D004751 4.4e-54 215.7 127 78.7
RcHm_v2.0_Chr1g0356441 Rosa chinensis HOM05D003837 ORTHO05D004751 1.8e-52 210.3 188 60.1
MCO05G263 Micromonas commoda HOM05D003837 ORTHO05D004751 3.8e-50 202.6 271 41.0
SGA_v2.0_scaffold95G28830 Striga asiatica HOM05D003837 ORTHO05D004751 4.0e-47 192.6 269 44.2
Cre13.g578900 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 1.8e-39 167.2 278 36.0
FvH4_7g14571 Fragaria vesca HOM05D003837 ORTHO05D004751 4.1e-36 156.0 88 83.0
MD09G1245400 Malus domestica HOM05D003837 ORTHO05D004751 1.3e-34 151.0 82 86.6
arahy.Tifrunner.gnm1.ann1.B43A3C Arachis hypogaea HOM05D003837 ORTHO05D004751 1.9e-33 147.1 129 62.8
Glyma.04G165300 Glycine max HOM05D003837 ORTHO05D004751 1.3e-29 134.4 109 64.2
MD09G1245300 Malus domestica HOM05D003837 ORTHO05D004751 1.8e-28 130.6 76 77.6
arahy.Tifrunner.gnm1.ann1.DBMD67 Arachis hypogaea HOM05D003837 ORTHO05D004751 1.2e-24 117.9 69 81.2
RcHm_v2.0_Chr1g0356021 Rosa chinensis HOM05D003837 ORTHO05D004751 2.6e-22 110.2 108 52.8
Ciclev10006592m.g Citrus clementina HOM05D003837 ORTHO05D033091 5.7e-22 109.0 67 70.1
Actinidia37295 Actinidia chinensis HOM05D003837 ORTHO05D004751 1.1e-20 104.8 68 73.5
Ciclev10013186m.g Citrus clementina HOM05D003837 ORTHO05D004751 5.6e-17 92.4 68 64.7
A06p08350 Brassica napus HOM05D003837 ORTHO05D099682 3.1e-15 86.7 65 64.6
A05p05950 Brassica napus HOM05D003837 ORTHO05D033091 7.5e-14 82.0 49 75.5
BraA05t19558Z Brassica rapa HOM05D003837 ORTHO05D033091 7.5e-14 82.0 49 75.5
AUR62043290 Chenopodium quinoa HOM05D008055 ORTHO05D009927 1.3e-13 81.3 60 61.7
BolC9t54120H Brassica oleracea HOM05D003837 ORTHO05D033622 1.9e-12 77.4 57 66.7
BolC7t40474H Brassica oleracea HOM05D003837 ORTHO05D033622 3.2e-12 76.6 57 64.9
C09p56440 Brassica napus HOM05D003837 ORTHO05D101394 9.5e-09 65.1 51 64.7
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.1e-07 61.6 40 67.5


User provided reference genes

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