Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g012130.1 Solanum lycopersicum HOM05D010533 ORTHO05D003378 2.2e-60 235.3 112 100.0
Sopen10g005900 Solanum pennellii HOM05D010533 ORTHO05D003378 2.3e-57 225.3 112 95.5
PGSC0003DMG400038800 Solanum tuberosum HOM05D010533 ORTHO05D003378 1.1e-43 179.9 116 73.3
PGSC0003DMG400036647 Solanum tuberosum HOM05D010533 ORTHO05D003378 1.5e-37 159.5 111 67.6
PGSC0003DMG400044023 Solanum tuberosum HOM05D010533 ORTHO05D003378 1.0e-36 156.8 113 65.5
Solyc10g012110.3 Solanum lycopersicum HOM05D010533 ORTHO05D003378 8.5e-36 153.7 111 65.8
Sopen10g005870 Solanum pennellii HOM05D010533 ORTHO05D003378 8.5e-36 153.7 111 65.8
PGSC0003DMG400035278 Solanum tuberosum HOM05D010533 ORTHO05D003378 4.2e-35 151.4 111 66.7
Solyc10g012120.1 Solanum lycopersicum HOM05D010533 ORTHO05D003378 1.2e-34 149.8 111 64.0
Sopen10g005880 Solanum pennellii HOM05D010533 ORTHO05D003378 2.1e-34 149.1 111 63.1
PGSC0003DMG400041307 Solanum tuberosum HOM05D010533 ORTHO05D003378 4.7e-34 147.9 111 64.0
CAN.G650.39 Capsicum annuum HOM05D010533 ORTHO05D003378 8.8e-25 117.1 111 53.2
Peaxi162Scf00008g00288 Petunia axillaris HOM05D010533 ORTHO05D003378 4.7e-18 94.7 99 50.5
Peaxi162Scf00066g00202 Petunia axillaris HOM05D010533 ORTHO05D003378 3.0e-17 92.0 107 43.9
Nitab4.5_0001821g0020 Nicotiana tabacum HOM05D000275 ORTHO05D003378 4.4e-16 88.2 108 40.7
Oeu043634.1 Olea europaea HOM05D010533 ORTHO05D003378 2.8e-15 85.5 103 43.7
Nitab4.5_0010416g0010 Nicotiana tabacum HOM05D000275 ORTHO05D003378 4.8e-15 84.7 96 42.7
SGA_v2.0_scaffold4G01900 Striga asiatica HOM05D000275 ORTHO05D003378 8.2e-15 84.0 105 41.0
Migut.M01357 Erythranthe guttata HOM05D010533 ORTHO05D003378 1.2e-13 80.1 90 44.4
MSTRG.7190 Avicennia marina HOM05D000275 ORTHO05D003378 5.9e-13 77.8 111 36.0
Peaxi162Scf00033g00043 Petunia axillaris HOM05D000275 ORTHO05D003378 7.7e-13 77.4 109 36.7
TAR626G1122 Trochodendron aralioides HOM05D000275 ORTHO05D003378 7.7e-13 77.4 107 41.1
SalBow8G5319 Salvia bowleyana HOM05D010533 ORTHO05D003378 1.3e-12 76.6 102 40.2
Haze_06883 Corylus avellana HOM05D006508 ORTHO05D003378 3.8e-12 75.1 105 41.0
Haze_06882 Corylus avellana HOM05D006508 ORTHO05D003378 8.5e-12 73.9 105 41.0
Ciclev10018268m.g Citrus clementina HOM05D000275 ORTHO05D003378 1.9e-11 72.8 91 40.7
Sopen06g019870 Solanum pennellii HOM05D010533 ORTHO05D003378 2.5e-11 72.4 102 37.3
TAR629G3202 Trochodendron aralioides HOM05D000275 ORTHO05D003378 2.5e-11 72.4 107 40.2
Lalb_Chr12g0203611 Lupinus albus HOM05D006508 ORTHO05D003378 5.5e-11 71.2 116 35.3
Phvul.005G045100 Phaseolus vulgaris HOM05D000275 ORTHO05D000181 5.5e-11 71.2 104 36.5
TAR629G2992 Trochodendron aralioides HOM05D006508 ORTHO05D003378 5.5e-11 71.2 107 37.4
VMungo1080G1094 Vigna mungo HOM05D000275 ORTHO05D000181 7.2e-11 70.9 104 35.6
COL.COLO4_17112 Corchorus olitorius HOM05D000275 ORTHO05D000181 9.4e-11 70.5 104 39.4
PSO210G2170 Papaver somniferum HOM05D000275 ORTHO05D003378 9.4e-11 70.5 114 34.2
COL.COLO4_03647 Corchorus olitorius HOM05D006508 ORTHO05D003378 1.2e-10 70.1 90 37.8
Glyma.15G265900 Glycine max HOM05D000275 ORTHO05D000181 1.2e-10 70.1 108 38.0
COL.COLO4_26711 Corchorus olitorius HOM05D006508 ORTHO05D003378 1.6e-10 69.7 107 34.6
Manes.16G001900 Manihot esculenta HOM05D006508 ORTHO05D003378 1.6e-10 69.7 106 33.0
Oeu024945.1 Olea europaea HOM05D000275 ORTHO05D000181 1.6e-10 69.7 111 33.3
DCAR_003257 Daucus carota HOM05D006508 ORTHO05D003378 2.1e-10 69.3 110 35.5
COL.COLO4_26709 Corchorus olitorius HOM05D006508 ORTHO05D003378 3.6e-10 68.6 107 34.6
DCAR_013213 Daucus carota HOM05D006508 ORTHO05D003378 3.6e-10 68.6 110 34.5
Peaxi162Scf01343g00142 Petunia axillaris HOM05D000275 ORTHO05D000181 3.6e-10 68.6 108 37.0
Cfa000131 Carpinus fangiana HOM05D006508 ORTHO05D003378 4.7e-10 68.2 113 34.5
Solyc06g059790.4 Solanum lycopersicum HOM05D010533 ORTHO05D003378 4.7e-10 68.2 79 41.8
SGA_v2.0_scaffold7G03794 Striga asiatica HOM05D005176 ORTHO05D006482 4.7e-10 68.2 91 37.4
Lalb_Chr20g0108251 Lupinus albus HOM05D000275 ORTHO05D000181 6.1e-10 67.8 107 31.8
CiPaw.09G100300 Carya illinoinensis HOM05D006508 ORTHO05D003378 8.0e-10 67.4 86 39.5
Eucgr.D01379 Eucalyptus grandis HOM05D000275 ORTHO05D003378 8.0e-10 67.4 90 36.7
TWI38G1593 Tripterygium wilfordii HOM05D006508 ORTHO05D003378 8.0e-10 67.4 92 38.0
ATR1128G035 Amborella trichopoda HOM05D000275 ORTHO05D003378 1.0e-09 67.0 108 35.2
Migut.M01353 Erythranthe guttata HOM05D006508 ORTHO05D003378 1.0e-09 67.0 92 34.8
MD10G1328900 Malus domestica HOM05D000275 ORTHO05D003378 1.4e-09 66.6 113 31.0
CANSAT11G2344 Cannabis sativa HOM05D000275 ORTHO05D000181 1.8e-09 66.2 113 35.4
arahy.Tifrunner.gnm1.ann1.EB1W4P Arachis hypogaea HOM05D000275 ORTHO05D000181 2.3e-09 65.9 113 31.9
COL.COLO4_26721 Corchorus olitorius HOM05D006508 ORTHO05D003378 2.3e-09 65.9 107 33.6
Thecc.06G230300 Theobroma cacao HOM05D000275 ORTHO05D003378 2.3e-09 65.9 91 38.5
CSS0044170 Camellia sinensis var. sinensis HOM05D000275 ORTHO05D000181 3.0e-09 65.5 107 32.7
Eucgr.H04731 Eucalyptus grandis HOM05D000275 ORTHO05D000181 3.0e-09 65.5 106 34.9
Lsat_1_v5_gn_3_100760 Lactuca sativa HOM05D000275 ORTHO05D000181 3.0e-09 65.5 108 33.3
SGA_v2.0_scaffold95G28758 Striga asiatica HOM05D000275 ORTHO05D000181 3.0e-09 65.5 111 36.0
FvH4_3g01190 Fragaria vesca HOM05D000275 ORTHO05D003378 4.0e-09 65.1 115 34.8
SEGI_03035 Sequoiadendron giganteum HOM05D000275 ORTHO05D000181 4.0e-09 65.1 109 32.1
FAN06G0058 Fragaria x ananassa HOM05D000275 ORTHO05D000181 5.2e-09 64.7 113 29.2
FAN06G4638 Fragaria x ananassa HOM05D000275 ORTHO05D000181 5.2e-09 64.7 113 29.2
Lalb_Chr12g0203601 Lupinus albus HOM05D006508 ORTHO05D003378 5.2e-09 64.7 116 32.8
Thecc.06G230500 Theobroma cacao HOM05D000275 ORTHO05D003378 5.2e-09 64.7 90 36.7
Dinv20121 Davidia involucrata HOM05D006508 ORTHO05D003378 6.8e-09 64.3 111 34.2
PGR042G3528 Punica granatum HOM05D000275 ORTHO05D000181 6.8e-09 64.3 103 35.9
SEGI_16300 Sequoiadendron giganteum HOM05D000275 ORTHO05D000181 6.8e-09 64.3 96 34.4
Sabra09G0016700 Salix brachista HOM05D000275 ORTHO05D000181 8.8e-09 63.9 108 34.3
Thecc.04G124500 Theobroma cacao HOM05D000275 ORTHO05D003378 8.8e-09 63.9 91 40.7
CiPaw.09G100900 Carya illinoinensis HOM05D006508 ORTHO05D003378 1.2e-08 63.5 104 31.7
FAN21G1243 Fragaria x ananassa HOM05D000275 ORTHO05D003378 1.2e-08 63.5 103 35.9
Gohir.D08G068000 Gossypium hirsutum HOM05D000275 ORTHO05D000181 1.2e-08 63.5 108 30.6
Lalb_Chr07g0188481 Lupinus albus HOM05D000275 ORTHO05D003378 1.2e-08 63.5 112 31.2
TWI38G0468 Tripterygium wilfordii HOM05D000275 ORTHO05D003378 1.2e-08 63.5 112 32.1
Gorai.004G071100 Gossypium raimondii HOM05D000275 ORTHO05D000181 1.5e-08 63.2 108 30.6
Os03g0808500 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D003378 1.5e-08 63.2 91 34.1
Thecc.06G230400 Theobroma cacao HOM05D006508 ORTHO05D003378 1.5e-08 63.2 91 37.4
Thecc.06G230600 Theobroma cacao HOM05D006508 ORTHO05D003378 1.5e-08 63.2 91 37.4
arahy.Tifrunner.gnm1.ann1.JFR3PY Arachis hypogaea HOM05D000275 ORTHO05D000181 2.0e-08 62.8 85 34.1
CSS0001255 Camellia sinensis var. sinensis HOM05D000275 ORTHO05D000181 2.0e-08 62.8 106 32.1
Cfa010681 Carpinus fangiana HOM05D000275 ORTHO05D000181 2.0e-08 62.8 111 31.5
Dinv43951 Davidia involucrata HOM05D000275 ORTHO05D000181 2.0e-08 62.8 104 33.7
Lsat_1_v5_gn_4_178380 Lactuca sativa HOM05D000275 ORTHO05D000181 2.0e-08 62.8 108 33.3
Lalb_Chr07g0188511 Lupinus albus HOM05D000275 ORTHO05D003378 2.0e-08 62.8 113 31.9
RcHm_v2.0_Chr5g0047311 Rosa chinensis HOM05D006508 ORTHO05D003378 2.0e-08 62.8 107 32.7
Lalb_Chr07g0188491 Lupinus albus HOM05D000275 ORTHO05D003378 2.6e-08 62.4 118 31.4
Prupe.2G000900 Prunus persica HOM05D000275 ORTHO05D000181 2.6e-08 62.4 101 33.7
ClCG09G003610 Citrullus lanatus HOM05D000275 ORTHO05D000181 3.4e-08 62.0 101 34.7
Potri.009G025200 Populus trichocarpa HOM05D000275 ORTHO05D000181 3.4e-08 62.0 99 36.4
Nn1g07322 Nelumbo nucifera HOM05D000275 ORTHO05D003378 4.4e-08 61.6 107 34.6
PGSC0003DMG400045247 Solanum tuberosum HOM05D006508 ORTHO05D003378 4.4e-08 61.6 106 34.9
MELO3C023497.2 Cucumis melo HOM05D000275 ORTHO05D000181 5.7e-08 61.2 111 34.2
FAN21G0761 Fragaria x ananassa HOM05D000275 ORTHO05D003378 5.7e-08 61.2 94 37.2
Gohir.A07G075600 Gossypium hirsutum HOM05D000275 ORTHO05D003378 5.7e-08 61.2 108 31.5
Hma1.2p1_0128F.1_g059960 Hydrangea macrophylla HOM05D000275 ORTHO05D000181 5.7e-08 61.2 107 31.8
Lalb_Chr15g0076251 Lupinus albus HOM05D000275 ORTHO05D000181 5.7e-08 61.2 110 34.5
Prupe.4G217000 Prunus persica HOM05D000275 ORTHO05D003378 5.7e-08 61.2 111 32.4
Aa31LG5G22760 Aethionema arabicum HOM05D000275 ORTHO05D003378 7.5e-08 60.8 109 34.9
CiPaw.09G101100 Carya illinoinensis HOM05D006508 ORTHO05D003378 7.5e-08 60.8 92 33.7
TWI38G1893 Tripterygium wilfordii HOM05D006508 ORTHO05D003378 7.5e-08 60.8 92 38.0
TWI38G2037 Tripterygium wilfordii HOM05D006508 ORTHO05D003378 7.5e-08 60.8 114 34.2
Medtr3g046443 Medicago truncatula HOM05D006508 ORTHO05D003378 9.8e-08 60.5 114 33.3
QL04p000796 Quercus lobata HOM05D000275 ORTHO05D000181 9.8e-08 60.5 106 31.1
Aa31LG5G22840 Aethionema arabicum HOM05D006508 ORTHO05D003378 1.3e-07 60.1 82 36.6
Cfa000132 Carpinus fangiana HOM05D006508 ORTHO05D003378 1.3e-07 60.1 109 35.8
Gorai.001G085000 Gossypium raimondii HOM05D000275 ORTHO05D003378 1.3e-07 60.1 106 29.2
Gohir.D07G080100 Gossypium hirsutum HOM05D000275 ORTHO05D003378 1.7e-07 59.7 106 29.2
Nitab4.5_0001198g0250 Nicotiana tabacum HOM05D006508 ORTHO05D003378 1.7e-07 59.7 105 35.2
Potri.001G232700 Populus trichocarpa HOM05D000275 ORTHO05D000181 1.7e-07 59.7 94 31.9
vmacro22473 Vaccinium macrocarpon HOM05D000275 ORTHO05D000181 1.7e-07 59.7 108 32.4
DCAR_015724 Daucus carota HOM05D000275 ORTHO05D000181 2.8e-07 58.9 111 30.6
Thhalv10002292m.g Eutrema salsugineum HOM05D000275 ORTHO05D003378 2.8e-07 58.9 80 36.2
Potri.001G232900 Populus trichocarpa HOM05D000275 ORTHO05D000181 2.8e-07 58.9 94 31.9
CsaV3_7G031570 Cucumis sativus L. HOM05D000275 ORTHO05D000181 3.7e-07 58.5 109 32.1
Sc18g0007010 Simmondsia chinensis HOM05D000275 ORTHO05D003378 3.7e-07 58.5 91 37.4
FvH4_7g10020 Fragaria vesca HOM05D000275 ORTHO05D000181 4.8e-07 58.2 113 27.4
Nn2g13360 Nelumbo nucifera HOM05D000275 ORTHO05D003378 4.8e-07 58.2 105 32.4
TPR.G39085 Trifolium pratense HOM05D006508 ORTHO05D003378 4.8e-07 58.2 120 30.0
CSS0033505 Camellia sinensis var. sinensis HOM05D000275 ORTHO05D003378 6.3e-07 57.8 109 33.9
Dinv07381 Davidia involucrata HOM05D006508 ORTHO05D003378 6.3e-07 57.8 107 30.8
Dinv20120 Davidia involucrata HOM05D006508 ORTHO05D003378 6.3e-07 57.8 107 30.8
Os06g0539500 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D000181 6.3e-07 57.8 117 35.0
Aa31LG5G22780 Aethionema arabicum HOM05D000275 ORTHO05D003378 8.3e-07 57.4 109 34.9
AL3G47090 Arabidopsis lyrata HOM05D000275 ORTHO05D003378 8.3e-07 57.4 113 31.0
Dinv20122 Davidia involucrata HOM05D006508 ORTHO05D003378 8.3e-07 57.4 107 30.8
Aa31LG8G15660 Aethionema arabicum HOM05D000275 ORTHO05D000181 1.1e-06 57.0 107 31.8
RcHm_v2.0_Chr5g0001761 Rosa chinensis HOM05D000275 ORTHO05D003378 1.1e-06 57.0 117 33.3
AT2G15325 Arabidopsis thaliana HOM05D000275 ORTHO05D003378 1.4e-06 56.6 109 33.0
Dinv20118 Davidia involucrata HOM05D006508 ORTHO05D003378 1.4e-06 56.6 111 29.7
QL04p068109 Quercus lobata HOM05D006508 ORTHO05D003378 1.4e-06 56.6 112 29.5
TPR.G25291 Trifolium pratense HOM05D000275 ORTHO05D003378 1.4e-06 56.6 112 31.2
HPP92_019919 Vanilla planifolia HOM05D000275 ORTHO05D003378 1.4e-06 56.6 112 29.5
Aa31LG5G22790 Aethionema arabicum HOM05D000275 ORTHO05D003378 1.8e-06 56.2 109 33.9
Gohir.A08G058800 Gossypium hirsutum HOM05D000275 ORTHO05D000181 2.4e-06 55.8 108 29.6
Manes.12G052802 Manihot esculenta HOM05D006508 ORTHO05D003378 2.4e-06 55.8 113 31.9
Manes.12G053200 Manihot esculenta HOM05D006508 ORTHO05D003378 2.4e-06 55.8 115 32.2
Nitab4.5_0004082g0030 Nicotiana tabacum HOM05D010533 ORTHO05D003378 2.4e-06 55.8 51 47.1
TPR.G13489 Trifolium pratense HOM05D006508 ORTHO05D003378 2.4e-06 55.8 112 30.4
Carub.0003s3252 Capsella rubella HOM05D000275 ORTHO05D000181 3.1e-06 55.5 94 33.0
Manes.13G059000 Manihot esculenta HOM05D000275 ORTHO05D003378 3.1e-06 55.5 81 34.6
QL04p068115 Quercus lobata HOM05D006508 ORTHO05D003378 3.1e-06 55.5 112 29.5
QL07p003185 Quercus lobata HOM05D006508 ORTHO05D003378 3.1e-06 55.5 112 30.4
TPR.G4368 Trifolium pratense HOM05D006508 ORTHO05D003378 4.1e-06 55.1 112 30.4
Actinidia12821 Actinidia chinensis HOM05D000275 ORTHO05D003378 5.4e-06 54.7 107 30.8
Aa31LG5G22770 Aethionema arabicum HOM05D000275 ORTHO05D003378 7.0e-06 54.3 69 37.7
Medtr1g040335 Medicago truncatula HOM05D000275 ORTHO05D000181 7.0e-06 54.3 107 29.9
MSTRG.4993 Avicennia marina HOM05D000275 ORTHO05D000181 9.1e-06 53.9 109 31.2
BcaC03g17659 Brassica carinata HOM05D000508 ORTHO05D000371 9.1e-06 53.9 107 30.8
C02p56630 Brassica napus HOM05D011686 ORTHO05D014051 9.1e-06 53.9 107 30.8
BolC2t11723H Brassica oleracea HOM05D011686 ORTHO05D014051 9.1e-06 53.9 107 30.8
Prupe.4G013200 Prunus persica HOM05D000275 ORTHO05D003378 9.1e-06 53.9 91 28.6


User provided reference genes

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