Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g012030.4 Solanum lycopersicum HOM05D003611 ORTHO05D004281 0.0e+00 1894.4 969 100.0
Sopen10g005780 Solanum pennellii HOM05D003611 ORTHO05D004281 0.0e+00 1836.2 991 95.8
Nitab4.5_0000200g0170 Nicotiana tabacum HOM05D003611 ORTHO05D004281 0.0e+00 1308.5 987 72.5
Nitab4.5_0000690g0050 Nicotiana tabacum HOM05D003611 ORTHO05D004281 0.0e+00 1291.2 993 71.4
Peaxi162Scf00585g00319 Petunia axillaris HOM05D003611 ORTHO05D004281 0.0e+00 1283.5 1041 68.4
Nitab4.5_0010703g0040 Nicotiana tabacum HOM05D003611 ORTHO05D004281 6.0e-287 991.1 1040 57.3
Sopen01g038800 Solanum pennellii HOM05D003611 ORTHO05D004281 6.0e-279 964.5 1053 55.2
Solyc01g095020.3 Solanum lycopersicum HOM05D003611 ORTHO05D004281 1.2e-276 956.8 1055 54.7
Peaxi162Scf00020g01228 Petunia axillaris HOM05D003611 ORTHO05D004281 8.9e-275 950.7 1058 54.2
Nitab4.5_0000915g0210 Nicotiana tabacum HOM05D003611 ORTHO05D004281 2.7e-239 832.8 1000 52.3
Dinv43856 Davidia involucrata HOM05D003611 ORTHO05D004281 1.1e-227 794.3 1086 47.0
Cc02_g38450 Coffea canephora HOM05D003611 ORTHO05D004281 8.2e-212 741.5 1068 45.4
CSS0009973 Camellia sinensis var. sinensis HOM05D003611 ORTHO05D004281 9.5e-192 674.9 1093 43.3
CSS0038908 Camellia sinensis var. sinensis HOM05D003611 ORTHO05D004281 2.2e-188 663.7 1062 42.1
Dinv32512 Davidia involucrata HOM05D003611 ORTHO05D004281 3.1e-187 659.8 966 44.1
Cfa003881 Carpinus fangiana HOM05D003611 ORTHO05D004281 1.3e-185 654.4 1090 41.9
Prupe.2G176000 Prunus persica HOM05D003611 ORTHO05D004281 9.5e-184 648.3 1103 41.3
Oeu018963.2 Olea europaea HOM05D003611 ORTHO05D004281 7.0e-179 632.1 1093 41.4
CiPaw.01G065700 Carya illinoinensis HOM05D003611 ORTHO05D004281 2.0e-178 630.6 1095 41.4
QL04p055101 Quercus lobata HOM05D003611 ORTHO05D004281 2.0e-178 630.6 1112 41.1
RcHm_v2.0_Chr1g0357311 Rosa chinensis HOM05D003611 ORTHO05D004281 4.6e-178 629.4 1094 41.3
Ciclev10018621m.g Citrus clementina HOM05D003611 ORTHO05D004281 9.8e-173 611.7 1089 41.1
MSTRG.4840 Avicennia marina HOM05D003611 ORTHO05D004281 3.2e-171 606.7 1071 39.6
Thecc.01G353800 Theobroma cacao HOM05D003611 ORTHO05D004281 5.4e-171 605.9 1090 40.2
Rhsim07G0011300 Rhododendron simsii HOM05D003611 ORTHO05D004281 9.5e-168 595.1 1119 40.0
Actinidia18539 Actinidia chinensis HOM05D003611 ORTHO05D004281 6.2e-167 592.4 1082 40.7
Haze_15553 Corylus avellana HOM05D003611 ORTHO05D004281 1.8e-166 590.9 1065 40.4
GSVIVG01026955001 Vitis vinifera HOM05D003611 ORTHO05D004281 4.0e-166 589.7 975 40.9
Potri.014G089200 Populus trichocarpa HOM05D003611 ORTHO05D004281 8.9e-166 588.6 1071 39.4
FAN06G4234 Fragaria x ananassa HOM05D003611 ORTHO05D004281 1.5e-165 587.8 1116 39.9
FvH4_7g15120 Fragaria vesca HOM05D003611 ORTHO05D004281 2.0e-165 587.4 1117 39.6
FAN03G1353 Fragaria x ananassa HOM05D003611 ORTHO05D004281 2.0e-165 587.4 1116 39.9
Lj7A508G38 Lonicera japonica HOM05D003611 ORTHO05D004281 5.8e-165 585.9 1081 41.4
Actinidia20152 Actinidia chinensis HOM05D003611 ORTHO05D004281 7.5e-165 585.5 1023 40.2
MD01G1069900 Malus domestica HOM05D003611 ORTHO05D004281 7.5e-165 585.5 1101 40.0
MSTRG.20858 Avicennia marina HOM05D003611 ORTHO05D004281 4.9e-164 582.8 1085 39.8
FAN01G0094 Fragaria x ananassa HOM05D003611 ORTHO05D004281 1.4e-163 581.3 1118 39.6
FAN06G0771 Fragaria x ananassa HOM05D003611 ORTHO05D004281 7.1e-163 578.9 1099 39.8
FAN10G4104 Fragaria x ananassa HOM05D003611 ORTHO05D004281 7.1e-163 578.9 1117 39.6
FAN10G1370 Fragaria x ananassa HOM05D003611 ORTHO05D004281 3.5e-162 576.6 1117 39.4
COL.COLO4_12765 Corchorus olitorius HOM05D003611 ORTHO05D004281 4.6e-162 576.2 1097 38.5
Potri.002G163000 Populus trichocarpa HOM05D003611 ORTHO05D004281 4.6e-162 576.2 1075 38.9
Nn1g01656 Nelumbo nucifera HOM05D003611 ORTHO05D004281 6.0e-162 575.9 1086 39.1
MD07G1132600 Malus domestica HOM05D003611 ORTHO05D004281 7.8e-162 575.5 1043 41.6
CiPaw.02G033900 Carya illinoinensis HOM05D003611 ORTHO05D004281 3.9e-161 573.2 1082 38.9
Atru.chr5.552 Acer truncatum HOM05D003611 ORTHO05D004281 1.5e-160 571.2 1072 39.2
Sabra14G0064800 Salix brachista HOM05D003611 ORTHO05D004281 9.5e-160 568.5 1084 38.0
TAR375G0370 Trochodendron aralioides HOM05D003611 ORTHO05D004281 2.8e-159 567.0 1051 39.7
Sabra02G0147500 Salix brachista HOM05D003611 ORTHO05D004281 3.6e-159 566.6 1069 37.9
Manes.05G030300 Manihot esculenta HOM05D003611 ORTHO05D004281 1.5e-157 561.2 1083 39.5
Glyma.18G237600 Glycine max HOM05D003611 ORTHO05D004281 3.4e-157 560.1 1075 39.0
Migut.B01791 Erythranthe guttata HOM05D003611 ORTHO05D004281 4.4e-157 559.7 1077 39.6
DCAR_008631 Daucus carota HOM05D003611 ORTHO05D004281 1.7e-156 557.8 1035 40.4
TWI14G0836 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 2.9e-156 557.0 1067 39.3
Actinidia10062 Actinidia chinensis HOM05D003611 ORTHO05D004281 5.4e-155 552.7 986 39.4
Glyma.09G255400 Glycine max HOM05D003611 ORTHO05D004281 1.7e-153 547.7 1084 39.7
Cpa.g.sc184.26 Carica papaya HOM05D003611 ORTHO05D004281 1.2e-151 541.6 1121 37.6
Eucgr.E00101 Eucalyptus grandis HOM05D003611 ORTHO05D004281 8.1e-151 538.9 1069 39.1
DCAR_006945 Daucus carota HOM05D003611 ORTHO05D004281 5.3e-150 536.2 1075 38.6
Gohir.A11G091600 Gossypium hirsutum HOM05D003611 ORTHO05D004281 5.3e-150 536.2 1100 38.4
Gohir.D11G096300 Gossypium hirsutum HOM05D003611 ORTHO05D004281 6.9e-150 535.8 1100 38.5
Sc23g0002620 Simmondsia chinensis HOM05D003611 ORTHO05D004281 6.9e-150 535.8 1008 38.7
CANSAT56G4470 Cannabis sativa HOM05D003611 ORTHO05D004281 2.0e-149 534.3 1064 37.9
Phvul.008G059100 Phaseolus vulgaris HOM05D003611 ORTHO05D004281 2.6e-149 533.9 1034 40.1
Duzib133G0517 Durio zibethinus HOM05D003611 ORTHO05D004281 7.6e-149 532.3 1101 37.4
Gorai.007G102600 Gossypium raimondii HOM05D003611 ORTHO05D004281 7.6e-149 532.3 1116 37.5
Ca_00818_v3 Cicer arietinum L. HOM05D003611 ORTHO05D004281 4.9e-148 529.6 1077 37.4
VMungo1383G2804 Vigna mungo HOM05D003611 ORTHO05D004281 7.8e-146 522.3 1073 39.0
Lj1g0014988 Lotus japonicus HOM05D003611 ORTHO05D004281 2.3e-145 520.8 1073 37.6
ClCG05G001310 Citrullus lanatus HOM05D003611 ORTHO05D004281 6.6e-145 519.2 1090 37.6
arahy.Tifrunner.gnm1.ann1.I9FVBP Arachis hypogaea HOM05D003611 ORTHO05D004281 8.7e-145 518.8 1059 38.6
Gohir.A11G091700 Gossypium hirsutum HOM05D003611 ORTHO05D004281 1.9e-144 517.7 1102 37.5
Medtr7g078820 Medicago truncatula HOM05D003611 ORTHO05D004281 1.9e-144 517.7 1077 37.1
PGR042G1491 Punica granatum HOM05D003611 ORTHO05D004281 2.5e-144 517.3 1059 37.4
Gorai.007G102800 Gossypium raimondii HOM05D003611 ORTHO05D004281 3.3e-144 516.9 1101 37.8
TWI59G0398 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 4.3e-144 516.5 1069 37.6
Gohir.D11G096500 Gossypium hirsutum HOM05D003611 ORTHO05D004281 7.3e-144 515.8 1098 37.3
ECA234G2210 Erigeron canadensis HOM05D003611 ORTHO05D004281 4.8e-143 513.1 1044 38.9
EL10Ac1g00365 Beta vulgaris HOM05D003611 ORTHO05D004281 1.2e-141 508.4 1035 38.6
TWI23G0144 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 3.4e-141 506.9 1047 36.8
MELO3C006087.2 Cucumis melo HOM05D003611 ORTHO05D004281 4.5e-141 506.5 1091 37.2
Psat3g107120 Pisum sativum HOM05D003611 ORTHO05D004281 2.4e-139 500.7 1073 37.0
vmacro13239 Vaccinium macrocarpon HOM05D003611 ORTHO05D004281 5.4e-139 499.6 1206 35.7
Lsat_1_v5_gn_4_35681 Lactuca sativa HOM05D003611 ORTHO05D004281 4.6e-138 496.5 1052 38.2
Duzib138G0252 Durio zibethinus HOM05D003611 ORTHO05D004281 6.0e-138 496.1 1005 38.7
CsaV3_3G008680 Cucumis sativus L. HOM05D003611 ORTHO05D004281 1.0e-137 495.4 1094 36.3
AUR62004403 Chenopodium quinoa HOM05D003611 ORTHO05D004281 3.9e-137 493.4 1041 37.8
Sed0010511 Sechium edule HOM05D003611 ORTHO05D004281 3.9e-137 493.4 1091 36.1
Hund16671 Selenicereus undatus HOM05D003611 ORTHO05D004281 3.9e-137 493.4 1060 37.8
HanXRQChr17g0562341 Helianthus annuus HOM05D003611 ORTHO05D004281 5.1e-137 493.0 1035 38.1
AUR62022609 Chenopodium quinoa HOM05D003611 ORTHO05D004281 1.8e-134 484.6 1038 37.8
Oeu015220.3 Olea europaea HOM05D003611 ORTHO05D004281 1.2e-133 481.9 882 39.6
TPR.G22300 Trifolium pratense HOM05D003611 ORTHO05D004281 2.9e-132 477.2 1079 35.8
Manes.01G253100 Manihot esculenta HOM05D003611 ORTHO05D004281 1.2e-130 471.9 1061 37.0
Lalb_Chr10g0096711 Lupinus albus HOM05D003611 ORTHO05D004281 6.7e-129 466.1 1043 36.0
Lalb_Chr17g0339111 Lupinus albus HOM05D003611 ORTHO05D004281 4.3e-128 463.4 1042 36.2
Sed0009698 Sechium edule HOM05D003611 ORTHO05D004281 3.7e-127 460.3 1075 36.0
Aqoxy7G00231 Aquilegia oxysepala HOM05D003611 ORTHO05D004281 3.1e-126 457.2 1062 36.3
Hund27250 Selenicereus undatus HOM05D003611 ORTHO05D004281 5.3e-126 456.4 1047 35.7
PSO478G2290 Papaver somniferum HOM05D003611 ORTHO05D004281 3.4e-125 453.8 1058 35.8
arahy.Tifrunner.gnm1.ann1.9C73IW Arachis hypogaea HOM05D003611 ORTHO05D004281 9.3e-123 445.7 1052 36.5
PSO782G0890 Papaver somniferum HOM05D003611 ORTHO05D004281 2.7e-122 444.1 1062 35.7
THA.LOC104825859 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 2.7e-122 444.1 1042 35.8
AL6G52100 Arabidopsis lyrata HOM05D003611 ORTHO05D004281 1.8e-121 441.4 1016 37.5
Lalb_Chr04g0259241 Lupinus albus HOM05D003611 ORTHO05D004281 6.7e-121 439.5 1041 36.5
Carub.0006s3636 Capsella rubella HOM05D003611 ORTHO05D004281 1.1e-120 438.7 1028 36.9
Sc01g0003270 Simmondsia chinensis HOM05D003611 ORTHO05D004281 7.4e-120 436.0 950 36.2
MBI11_g13553_MAGBIO Magnolia biondii HOM05D003611 ORTHO05D004281 6.3e-119 433.0 818 39.1
THA.LOC104817035 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 1.0e-116 425.6 1025 36.2
Sp6g00840 Schrenkiella parvula HOM05D003611 ORTHO05D004281 1.4e-115 421.8 1021 35.7
THA.LOC104801395 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 3.9e-113 413.7 1065 35.0
Thhalv10028394m.g Eutrema salsugineum HOM05D003611 ORTHO05D004281 1.1e-112 412.1 1008 36.1
AT4G01290 Arabidopsis thaliana HOM05D003611 ORTHO05D004281 2.4e-110 404.4 1022 36.2
CARHR249020 Cardamine hirsuta HOM05D003611 ORTHO05D004281 6.9e-110 402.9 1022 36.4
Hma1.2p1_0627F.1_g191700 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 4.2e-107 393.7 830 36.9
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 2.7e-106 391.0 998 35.2
Lalb_Chr17g0339131 Lupinus albus HOM05D003611 ORTHO05D004281 7.9e-106 389.4 1029 32.4
Aa31LG5G730 Aethionema arabicum HOM05D003611 ORTHO05D004281 8.8e-105 386.0 1077 33.6
BcaC01g06854 Brassica carinata HOM05D003611 ORTHO05D004281 1.1e-104 385.6 1014 35.7
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 3.3e-104 384.0 1013 33.8
BolC3t16170H Brassica oleracea HOM05D003611 ORTHO05D004281 3.3e-104 384.0 1020 35.9
SalBow3G4181 Salvia bowleyana HOM05D003611 ORTHO05D004281 4.8e-103 380.2 525 46.3
C03p38980 Brassica napus HOM05D003611 ORTHO05D004281 1.8e-102 378.3 1013 35.5
A03p31960 Brassica napus HOM05D003611 ORTHO05D004281 3.1e-102 377.5 1018 36.0
BraA03t12368Z Brassica rapa HOM05D003611 ORTHO05D004281 5.3e-102 376.7 1018 36.0
BcaB01g02283 Brassica carinata HOM05D003611 ORTHO05D004281 2.2e-100 371.3 992 35.4
SGA_v2.0_scaffold4G02289 Striga asiatica HOM05D003611 ORTHO05D004281 2.9e-100 370.9 537 45.6
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 1.6e-98 365.2 1003 34.8
BcaB01g02151 Brassica carinata HOM05D003611 ORTHO05D004281 1.4e-97 362.1 1016 34.3
BcaC04g24140 Brassica carinata HOM05D003611 ORTHO05D004281 3.3e-96 357.5 1000 35.8
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 3.3e-96 357.5 1000 35.8
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 3.3e-96 357.5 1000 35.8
BcaB05g23959 Brassica carinata HOM05D003611 ORTHO05D004281 4.1e-94 350.5 991 33.9
CDE11G0274 Ceratophyllum demersum HOM05D003611 ORTHO05D004281 3.0e-89 334.3 1072 31.6
Os06g0105900 Oryza sativa ssp. japonica HOM05D003611 ORTHO05D004281 3.4e-88 330.9 1065 31.9
CDE09G0589 Ceratophyllum demersum HOM05D003611 ORTHO05D004281 1.4e-86 325.5 1063 31.5
Zm00001eb374330 Zea mays HOM05D003611 ORTHO05D004281 1.0e-84 319.3 1030 32.2
unitig_8.g3336 Utricularia gibba HOM05D003611 ORTHO05D004281 1.5e-83 315.5 945 32.2
ATR0661G469 Amborella trichopoda HOM05D003611 ORTHO05D004281 2.9e-63 248.1 655 35.1
Ah.05g180220 Amaranthus hybridus HOM05D003611 ORTHO05D004281 1.1e-62 246.1 457 40.0
SalBow3G3040 Salvia bowleyana HOM05D003611 ORTHO05D004281 9.5e-59 233.0 535 35.0
HPP92_002731 Vanilla planifolia HOM05D003611 ORTHO05D004281 3.6e-58 231.1 492 38.8
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 1.4e-54 219.2 580 33.3
Lalb_Chr04g0259231 Lupinus albus HOM05D003611 ORTHO05D004281 4.1e-54 217.6 632 32.0
Lalb_Chr04g0259211 Lupinus albus HOM05D003611 ORTHO05D004281 1.4e-46 192.6 234 48.7
Actinidia02822 Actinidia chinensis HOM05D003611 ORTHO05D004281 3.5e-45 188.0 228 49.1
unitig_22.g6727 Utricularia gibba HOM05D003611 ORTHO05D004281 5.6e-43 180.6 827 28.8
TAR374G1053 Trochodendron aralioides HOM05D003611 ORTHO05D004281 1.5e-40 172.6 504 31.7
Hma1.2p1_0623F.1_g191000 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 1.2e-37 162.9 190 52.6
GSVIVG01028853001 Vitis vinifera HOM05D003611 ORTHO05D004281 2.1e-34 152.1 325 36.0
Actinidia02823 Actinidia chinensis HOM05D003611 ORTHO05D004281 7.6e-32 143.7 327 34.9
TAR374G0905 Trochodendron aralioides HOM05D003611 ORTHO05D004281 1.1e-27 129.8 203 41.9
Pp3c19_15630 Physcomitrium patens HOM05D025697 ORTHO05D004281 4.3e-27 127.9 821 25.5
Pp3c18_8750 Physcomitrium patens HOM05D025697 ORTHO05D004281 3.1e-25 121.7 932 25.4
unitig_22.g6726 Utricularia gibba HOM05D003611 ORTHO05D004281 1.5e-24 119.4 192 43.8
QL09p012690 Quercus lobata HOM05D003611 ORTHO05D004281 1.9e-22 112.5 465 29.0
Dinv35257 Davidia involucrata HOM05D003611 ORTHO05D004281 3.2e-22 111.7 701 25.5
Cfa016292 Carpinus fangiana HOM05D003611 ORTHO05D004281 5.5e-22 110.9 315 31.7
Hma1.2p1_0623F.1_g191005 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 7.1e-22 110.5 130 49.2
Haze_00050 Corylus avellana HOM05D003611 ORTHO05D004281 9.3e-22 110.2 962 24.7
Duzib268G1133 Durio zibethinus HOM05D003611 ORTHO05D004281 4.6e-21 107.8 137 44.5
Mapoly0012s0024 Marchantia polymorpha HOM05D003611 ORTHO05D021332 1.5e-19 102.8 923 25.6
Hma1.2p1_2961F.1_g330880 Hydrangea macrophylla HOM05D003611 ORTHO05D004281 7.4e-19 100.5 266 35.3
SEGI_14695 Sequoiadendron giganteum HOM05D003611 ORTHO05D004281 5.3e-17 94.4 255 32.5
Gorai.007G013100 Gossypium raimondii HOM05D003611 ORTHO05D011897 1.2e-16 93.2 250 33.6
Atru.chr1.351 Acer truncatum HOM05D003611 ORTHO05D004281 1.5e-16 92.8 259 32.8
Gohir.D11G011700 Gossypium hirsutum HOM05D003611 ORTHO05D011897 2.6e-16 92.0 269 32.3
Gohir.A11G012500 Gossypium hirsutum HOM05D003611 ORTHO05D011897 1.0e-15 90.1 275 32.7
Oeu054339.1 Olea europaea HOM05D003611 ORTHO05D004281 1.7e-15 89.4 158 39.9
ATR0661G048 Amborella trichopoda HOM05D003611 ORTHO05D004281 2.9e-15 88.6 215 35.8
Thecc.03G184800 Theobroma cacao HOM05D003611 ORTHO05D011897 1.9e-14 85.9 382 27.7
Duzib205G1157 Durio zibethinus HOM05D003611 ORTHO05D011897 4.2e-14 84.7 356 27.2
Dinv32513 Davidia involucrata HOM05D003611 ORTHO05D004281 5.5e-14 84.3 81 55.6
SEGI_21460 Sequoiadendron giganteum HOM05D003611 ORTHO05D004281 2.7e-13 82.0 297 31.0
HPP92_002605 Vanilla planifolia HOM05D046274 ORTHO05D004281 1.3e-12 79.7 360 28.6
Rhsim03G0191400 Rhododendron simsii HOM05D003611 ORTHO05D038142 5.1e-12 77.8 239 29.3
TWI23G0357 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 8.7e-12 77.0 242 31.8
BcaC03g16054 Brassica carinata HOM05D003611 ORTHO05D004281 1.9e-06 59.3 66 45.5
AUR62031425 Chenopodium quinoa HOM05D034504 ORTHO05D026482 4.2e-06 58.2 188 29.3
Ciclev10006595m.g Citrus clementina HOM05D003611 ORTHO05D004281 4.2e-06 58.2 111 42.3
Hund11716 Selenicereus undatus HOM05D003611 ORTHO05D026482 4.2e-06 58.2 285 27.7
Prupe.2G301400 Prunus persica HOM05D010729 ORTHO05D011897 5.5e-06 57.8 248 29.4
AUR62021117 Chenopodium quinoa HOM05D034504 ORTHO05D026482 7.2e-06 57.4 186 30.6


User provided reference genes

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