Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g008990.4 Solanum lycopersicum HOM05D006332 ORTHO05D008421 1.1e-265 919.5 463 100.0
PGSC0003DMG400022831 Solanum tuberosum HOM05D006332 ORTHO05D008421 4.0e-249 864.4 451 97.3
Nitab4.5_0003942g0020 Nicotiana tabacum HOM05D006332 ORTHO05D008421 1.4e-225 786.2 450 88.9
Peaxi162Scf00530g00823 Petunia axillaris HOM05D006332 ORTHO05D008421 1.5e-219 766.1 447 87.2
Cc02_g13080 Coffea canephora HOM05D006332 ORTHO05D008421 7.7e-200 700.7 443 78.3
Dinv07538 Davidia involucrata HOM05D006332 ORTHO05D008421 8.0e-197 690.6 445 77.1
Actinidia01892 Actinidia chinensis HOM05D006332 ORTHO05D008421 8.8e-196 687.2 445 76.0
Oeu053924.1 Olea europaea HOM05D006332 ORTHO05D008421 5.7e-195 684.5 436 78.9
Lj1C1207T6 Lonicera japonica HOM05D006332 ORTHO05D008421 5.3e-193 677.9 439 76.5
MSTRG.13186 Avicennia marina HOM05D006332 ORTHO05D008421 2.0e-192 676.0 440 77.5
Migut.H01511 Erythranthe guttata HOM05D006332 ORTHO05D008421 3.8e-191 671.8 442 75.6
TAR629G2846 Trochodendron aralioides HOM05D006332 ORTHO05D008421 1.4e-188 663.3 445 74.2
GSVIVG01002030001 Vitis vinifera HOM05D006332 ORTHO05D008421 3.0e-188 662.1 443 74.3
CiPaw.09G057500 Carya illinoinensis HOM05D006332 ORTHO05D008421 9.8e-187 657.1 442 74.0
Thecc.06G190700 Theobroma cacao HOM05D006332 ORTHO05D008421 2.2e-186 656.0 446 73.3
Gohir.D06G130900 Gossypium hirsutum HOM05D006332 ORTHO05D008421 2.4e-185 652.5 446 72.4
Potri.004G040500 Populus trichocarpa HOM05D006332 ORTHO05D008421 4.5e-184 648.3 442 72.9
Cpa.g.sc27.66 Carica papaya HOM05D006332 ORTHO05D008421 5.9e-184 647.9 439 74.0
Duzib235G1125 Durio zibethinus HOM05D006332 ORTHO05D008421 7.7e-184 647.5 443 72.9
Prupe.4G044000 Prunus persica HOM05D006332 ORTHO05D008421 1.0e-183 647.1 451 71.0
CSS0022240 Camellia sinensis var. sinensis HOM05D006332 ORTHO05D008421 2.2e-183 646.0 445 73.7
Glyma.13G181100 Glycine max HOM05D006332 ORTHO05D008421 8.5e-183 644.0 437 73.2
MD10G1296600 Malus domestica HOM05D006332 ORTHO05D008421 1.9e-182 642.9 445 72.1
Gohir.A06G126100 Gossypium hirsutum HOM05D006332 ORTHO05D008421 4.2e-182 641.7 448 71.7
Manes.16G025600 Manihot esculenta HOM05D006332 ORTHO05D008421 4.2e-182 641.7 444 72.7
Hma1.2p1_0881F.1_g231970 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 2.7e-181 639.0 443 72.7
PGR004G2698 Punica granatum HOM05D006332 ORTHO05D008421 6.8e-180 634.4 446 70.6
MELO3C002589.2 Cucumis melo HOM05D006332 ORTHO05D008421 8.8e-180 634.0 447 70.7
PSO063G3883 Papaver somniferum HOM05D006332 ORTHO05D008421 2.0e-179 632.9 443 71.3
Gorai.010G152800 Gossypium raimondii HOM05D006332 ORTHO05D008421 2.6e-179 632.5 433 73.2
TWI38G1702 Tripterygium wilfordii HOM05D006332 ORTHO05D008421 5.7e-179 631.3 443 72.0
Aqoxy1G02544 Aquilegia oxysepala HOM05D006332 ORTHO05D008421 1.3e-178 630.2 436 70.4
Phvul.002G227700 Phaseolus vulgaris HOM05D006332 ORTHO05D008421 2.8e-178 629.0 435 72.6
CsaV3_1G012160 Cucumis sativus L. HOM05D006332 ORTHO05D008421 3.7e-178 628.6 447 69.8
Ca_18532_v3 Cicer arietinum L. HOM05D006332 ORTHO05D008421 4.9e-178 628.2 439 72.2
THA.LOC104817534 Tarenaya hassleriana HOM05D006332 ORTHO05D008421 4.9e-178 628.2 449 70.8
COL.COLO4_31500 Corchorus olitorius HOM05D006332 ORTHO05D008421 6.3e-178 627.9 469 68.2
Eucgr.D00641 Eucalyptus grandis HOM05D006332 ORTHO05D008421 6.3e-178 627.9 442 72.2
PSO782G1256 Papaver somniferum HOM05D006332 ORTHO05D008421 6.3e-178 627.9 443 71.1
Duzib160G0593 Durio zibethinus HOM05D006332 ORTHO05D008421 1.8e-177 626.3 440 72.5
Sed0003237 Sechium edule HOM05D006332 ORTHO05D008421 2.4e-177 625.9 446 69.7
FAN16G1437 Fragaria x ananassa HOM05D006332 ORTHO05D008421 4.1e-177 625.2 438 71.0
QL05p039635 Quercus lobata HOM05D006332 ORTHO05D008421 7.0e-177 624.4 454 69.8
ClCG03G005920 Citrullus lanatus HOM05D006332 ORTHO05D008421 9.2e-177 624.0 457 69.1
Haze_06500 Corylus avellana HOM05D006332 ORTHO05D008421 9.2e-177 624.0 450 69.6
Glyma.07G195200 Glycine max HOM05D006332 ORTHO05D008421 9.2e-177 624.0 437 71.9
RcHm_v2.0_Chr5g0008031 Rosa chinensis HOM05D006332 ORTHO05D008421 2.0e-176 622.9 445 70.1
FvH4_3g04870 Fragaria vesca HOM05D006332 ORTHO05D008421 2.7e-176 622.5 438 70.3
Lj4g0020818 Lotus japonicus HOM05D006332 ORTHO05D008421 1.3e-175 620.2 435 71.0
MD05G1316100 Malus domestica HOM05D006332 ORTHO05D008421 1.7e-175 619.8 446 69.3
CANSAT35G2021 Cannabis sativa HOM05D006332 ORTHO05D008421 2.9e-175 619.0 442 71.3
Thhalv10018568m.g Eutrema salsugineum HOM05D006332 ORTHO05D008421 3.3e-174 615.5 447 69.1
FAN11G2101 Fragaria x ananassa HOM05D003523 ORTHO05D004493 3.3e-174 615.5 438 69.6
TPR.G12057 Trifolium pratense HOM05D006332 ORTHO05D008421 3.3e-174 615.5 434 72.1
FAN21G2488 Fragaria x ananassa HOM05D003523 ORTHO05D004493 4.3e-174 615.1 434 70.5
arahy.Tifrunner.gnm1.ann1.I941VF Arachis hypogaea HOM05D006332 ORTHO05D008421 5.6e-174 614.8 433 71.1
Medtr4g088960 Medicago truncatula HOM05D006332 ORTHO05D008421 7.3e-174 614.4 435 71.5
HanXRQChr04g0124141 Helianthus annuus HOM05D006332 ORTHO05D008421 9.5e-174 614.0 443 69.3
arahy.Tifrunner.gnm1.ann1.5TP18E Arachis hypogaea HOM05D006332 ORTHO05D008421 1.2e-173 613.6 434 70.3
Psat7g112800 Pisum sativum HOM05D006332 ORTHO05D008421 2.1e-173 612.8 444 70.9
VMungo0251G1219 Vigna mungo HOM05D006332 ORTHO05D008421 3.6e-173 612.1 432 71.3
Gohir.A10G024200 Gossypium hirsutum HOM05D006332 ORTHO05D008421 4.0e-172 608.6 446 67.5
Carub.0004s3069 Capsella rubella HOM05D006332 ORTHO05D008421 5.2e-172 608.2 450 68.7
Lalb_Chr16g0383661 Lupinus albus HOM05D006332 ORTHO05D008421 8.9e-172 607.4 443 69.8
AL4G47550 Arabidopsis lyrata HOM05D006332 ORTHO05D008421 4.4e-171 605.1 445 68.5
BcaC02g12534 Brassica carinata HOM05D006332 ORTHO05D008421 1.7e-170 603.2 452 68.1
TWI63G1670 Tripterygium wilfordii HOM05D006332 ORTHO05D008421 2.2e-170 602.8 467 67.5
Gorai.011G026200 Gossypium raimondii HOM05D006332 ORTHO05D008421 2.9e-170 602.4 440 68.2
Gohir.D10G024900 Gossypium hirsutum HOM05D006332 ORTHO05D008421 1.4e-169 600.1 439 67.9
Sp4g29880 Schrenkiella parvula HOM05D006332 ORTHO05D008421 1.4e-169 600.1 450 67.1
AT2G47960 Arabidopsis thaliana HOM05D006332 ORTHO05D008421 1.8e-169 599.7 446 67.7
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 1.2e-168 597.0 445 68.3
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 1.2e-168 597.0 445 68.3
Ciclev10015324m.g Citrus clementina HOM05D006332 ORTHO05D008421 1.2e-168 597.0 453 67.8
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 2.0e-168 596.3 448 68.1
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 2.0e-168 596.3 448 68.1
Nn6g34413 Nelumbo nucifera HOM05D006332 ORTHO05D008421 2.7e-168 595.9 447 66.4
ATR0680G340 Amborella trichopoda HOM05D006332 ORTHO05D008421 1.7e-167 593.2 435 69.9
ECA236G3091 Erigeron canadensis HOM05D006332 ORTHO05D008421 5.0e-167 591.7 445 67.0
EL10Ac8g20347 Beta vulgaris HOM05D006332 ORTHO05D008421 6.6e-167 591.3 433 69.7
BcaB02g08727 Brassica carinata HOM05D006332 ORTHO05D008421 1.5e-166 590.1 453 67.1
HanXRQChr01g0003951 Helianthus annuus HOM05D006332 ORTHO05D008421 3.3e-166 589.0 436 68.1
ECA248G3961 Erigeron canadensis HOM05D006332 ORTHO05D008421 8.9e-164 580.9 433 66.5
Nitab4.5_0009738g0010 Nicotiana tabacum HOM05D006332 ORTHO05D008421 1.2e-163 580.5 361 83.7
Sabra04G0025000 Salix brachista HOM05D006332 ORTHO05D008421 2.6e-163 579.3 503 62.0
CAN.G413.15 Capsicum annuum HOM05D006332 ORTHO05D008421 6.4e-162 574.7 328 89.0
AUR62016979 Chenopodium quinoa HOM05D006332 ORTHO05D008421 9.2e-161 570.9 435 67.6
Nn1g04020 Nelumbo nucifera HOM05D006332 ORTHO05D008421 3.0e-159 565.8 371 73.9
Aa31LG1G29380 Aethionema arabicum HOM05D006332 ORTHO05D008421 8.6e-159 564.3 447 65.8
CDE08G0172 Ceratophyllum demersum HOM05D006332 ORTHO05D008421 1.9e-158 563.1 450 63.3
HPP92_001753 Vanilla planifolia HOM05D006332 ORTHO05D008421 1.2e-157 560.5 440 65.5
Hma1.2p1_0126F.1_g059220 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 4.7e-157 558.5 455 64.2
AUR62014792 Chenopodium quinoa HOM05D006332 ORTHO05D008421 1.4e-156 557.0 450 66.0
SGA_v2.0_scaffold49G18281 Striga asiatica HOM05D006332 ORTHO05D008421 1.8e-156 556.6 456 63.6
Lsat_1_v5_gn_7_19001 Lactuca sativa HOM05D006332 ORTHO05D008421 8.9e-156 554.3 438 64.6
CARHR143350 Cardamine hirsuta HOM05D006332 ORTHO05D008421 4.4e-155 552.0 391 70.6
Zm00001eb044550 Zea mays HOM05D006332 ORTHO05D008421 2.9e-154 549.3 445 63.1
MBI17_g03748_MAGBIO Magnolia biondii HOM05D006332 ORTHO05D008421 1.8e-148 530.0 440 63.0
DCAR_004087 Daucus carota HOM05D006332 ORTHO05D008421 7.6e-147 524.6 348 74.7
Hma1.2p1_0881F.1_g231960 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 4.1e-145 518.8 353 73.7
unitig_8.g3355 Utricularia gibba HOM05D006332 ORTHO05D008421 5.6e-142 508.4 453 62.0
Lsat_1_v5_gn_1_127821 Lactuca sativa HOM05D006332 ORTHO05D008421 3.1e-140 502.7 443 60.0
Hund21245 Selenicereus undatus HOM05D006332 ORTHO05D008421 1.3e-135 487.3 440 60.5
Cfa000416 Carpinus fangiana HOM05D006332 ORTHO05D008421 3.9e-135 485.7 338 71.3
Duzib192G0908 Durio zibethinus HOM05D006332 ORTHO05D008421 4.6e-128 462.2 349 68.5
Pp3c1_28670 Physcomitrium patens HOM05D006332 ORTHO05D008421 3.9e-127 459.1 449 53.2
AagrBONN_evm.TU.Sc2ySwM_344.1820 Anthoceros agrestis HOM05D006332 ORTHO05D008421 6.2e-125 451.8 442 53.2
Mapoly0122s0006 Marchantia polymorpha HOM05D006332 ORTHO05D008421 1.7e-122 443.7 450 50.4
Sc24g0000810 Simmondsia chinensis HOM05D006332 ORTHO05D008421 2.2e-122 443.4 613 45.0
Atru.chr10.1934 Acer truncatum HOM05D006332 ORTHO05D008421 2.1e-120 436.8 291 73.9
SMO364G0571 Selaginella moellendorffii HOM05D006332 ORTHO05D008421 7.4e-118 428.3 433 50.8
Sopen10g004770 Solanum pennellii HOM05D006332 ORTHO05D008421 1.4e-116 424.1 215 99.1
Nitab4.5_0009738g0020 Nicotiana tabacum HOM05D006332 ORTHO05D008421 1.2e-107 394.4 333 65.2
CBR_g24248 Chara braunii HOM05D006332 ORTHO05D008421 2.9e-90 336.7 458 42.6
SMO364G0067 Selaginella moellendorffii HOM05D006332 ORTHO05D008421 3.2e-89 333.2 315 52.4
Gohir.A10G024325 Gossypium hirsutum HOM05D006332 ORTHO05D008421 1.1e-86 324.7 213 76.5
SHI01800 Sapria himalayana HOM05D006332 ORTHO05D008421 1.6e-83 314.3 295 57.6
Gohir.A10G024350 Gossypium hirsutum HOM05D006332 ORTHO05D008421 2.2e-45 187.6 157 59.2
PRCOL_00003805 Prasinoderma coloniale HOM05D006332 ORTHO05D008421 1.4e-44 184.9 410 33.9
SHI01798 Sapria himalayana HOM05D000002 ORTHO05D000001 6.2e-40 169.5 204 48.5
Nitab4.5_0009738g0030 Nicotiana tabacum HOM05D006332 ORTHO05D008421 4.6e-35 153.3 91 83.5
Atru.chr10.1933 Acer truncatum HOM05D006332 ORTHO05D008421 1.5e-30 138.3 115 60.0
Ciclev10009862m.g Citrus clementina HOM05D006332 ORTHO05D008421 2.4e-28 131.0 102 61.8
PSO017G7020 Papaver somniferum HOM05D006332 ORTHO05D000676 6.4e-21 106.3 113 46.0
PSO170G5489 Papaver somniferum HOM05D006332 ORTHO05D008421 6.0e-19 99.8 99 47.5
TPR.G24681 Trifolium pratense HOM05D006332 ORTHO05D001923 1.5e-17 95.1 62 69.4
CDE02G4141 Ceratophyllum demersum HOM05D006332 ORTHO05D008421 1.8e-10 71.6 134 35.8
Os10g0498800 Oryza sativa ssp. japonica HOM05D006332 ORTHO05D008421 2.1e-08 64.7 64 46.9
FAN09G2993 Fragaria x ananassa HOM05D006332 ORTHO05D210550 1.5e-06 58.5 69 47.8
TPR.G32042 Trifolium pratense HOM05D006332 ORTHO05D034078 4.5e-06 57.0 37 70.3


User provided reference genes

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